Guide to the Human Genome
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Name: LOC388849 Sequence: fasta or formatted (370aa) NCBI GI: 169215894
Description:

PREDICTED: similar to hCG1732289

Not currently referenced in the text

Other entries for this name:
alt prot {490aa} PREDICTED: similar to hCG1732289
alt prot {391aa} PREDICTED: similar to hCG1732289
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         31           3
 C cysteine            3.0         11           1
 D aspartate           3.0         11           1
 E glutamate           6.5         24           2
 F phenylalanine       3.0         11           1
 G glycine            10.8         40           2
 H histidine           2.2          8           1
 I isoleucine          1.6          6           1
 K lysine              3.8         14           2
 L leucine            14.1         52           3
 M methionine          2.4          9           1
 N asparagine          3.5         13           2
 P proline             6.8         25           2
 Q glutamine           7.8         29           2
 R arginine            6.8         25           2
 S serine              4.6         17           2
 T threonine           4.3         16           2
 V valine              4.9         18           2
 W tryptophan          2.2          8           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1732289 
LOC388849             0.943   PREDICTED: similar to hCG1732289 
LOC388849             0.896   PREDICTED: similar to hCG1732289 
TMCO5A                0.033   transmembrane and coiled-coil domains 5A 
WDR33                 0.020   WD repeat domain 33 isoform 1 
MYH9                  0.015   myosin, heavy polypeptide 9, non-muscle 
TMEM191C              0.015   PREDICTED: hypothetical protein 
TMEM191C              0.015   PREDICTED: hypothetical protein 
TMEM191C              0.015   PREDICTED: hypothetical protein 
TMEM191B              0.015   PREDICTED: hypothetical protein isoform 2 
BEND4                 0.015   BEN domain containing 4 isoform b 
BEND4                 0.015   BEN domain containing 4 isoform a 
PPP1R9B               0.014   protein phosphatase 1, regulatory subunit 9B 
MYH2                  0.014   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.014   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH4                  0.014   myosin, heavy polypeptide 4, skeletal muscle 
MYH7B                 0.012   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
LOC100128528          0.012   PREDICTED: hypothetical protein 
LOC100128528          0.012   PREDICTED: hypothetical protein 
LOC100128528          0.012   PREDICTED: hypothetical protein 
C12orf70              0.011   hypothetical protein LOC341346 
LOC100133311          0.011   PREDICTED: similar to hCG1644697 
LOC100133311          0.011   PREDICTED: similar to hCG1644697 
LOC100133311          0.011   PREDICTED: similar to hCG1644697 
LOC100133311          0.011   PREDICTED: similar to hCG1644697 
IRX5                  0.011   iroquois homeobox protein 5 
PLEKHH1               0.011   pleckstrin homology domain containing, family H (wit...
MYH1                  0.009   myosin, heavy chain 1, skeletal muscle, adult [Homo...
LOC147670             0.009   PREDICTED: hypothetical protein LOC147670 
LOC147670             0.009   PREDICTED: hypothetical protein LOC147670 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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