Search of human proteins with 169212973

Search of human proteins with 169212973

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169212973 PREDICTED: hypothetical protein [Homo sapiens]
         (103 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169212973 PREDICTED: hypothetical protein [Homo sapiens]           209   5e-55
gi|113427916 PREDICTED: hypothetical protein [Homo sapiens]           207   1e-54
gi|31377705 centrosomal protein 97kDa [Homo sapiens]                   28   1.6  
gi|109134340 tubulin tyrosine ligase-like family, member 3 [Homo...    28   2.0  
gi|8051584 ficolin 1 precursor [Homo sapiens]                          28   2.0  
gi|156151415 phosphatidylcholine transfer protein isoform 1 [Hom...    28   2.0  
gi|163644316 hypothetical protein LOC23255 [Homo sapiens]              28   2.0  
gi|38788333 remodeling and spacing factor 1 [Homo sapiens]             27   2.6  
gi|14110395 X-box binding protein 1 isoform XBP1(U) [Homo sapiens]     27   4.5  
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s...    27   4.5  
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s...    27   4.5  
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ...    27   4.5  
gi|31542650 MANSC domain containing 1 [Homo sapiens]                   26   5.9  
gi|5453619 collectin sub-family member 10 [Homo sapiens]               26   5.9  
gi|158534055 round spermatid basic protein 1-like [Homo sapiens]       26   7.7  

>gi|169212973 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 103

 Score =  209 bits (531), Expect = 5e-55
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MGPLGPKAEVGEMERRRGLGDSGSTSEACKLQGNEEQPLLKQSVKSVLALRASFYCPGKE 60
           MGPLGPKAEVGEMERRRGLGDSGSTSEACKLQGNEEQPLLKQSVKSVLALRASFYCPGKE
Sbjct: 1   MGPLGPKAEVGEMERRRGLGDSGSTSEACKLQGNEEQPLLKQSVKSVLALRASFYCPGKE 60

Query: 61  VWPLSSAQHLIAVVTEDTLIFRILPQRLGLYKLLSWGSLSFCS 103
           VWPLSSAQHLIAVVTEDTLIFRILPQRLGLYKLLSWGSLSFCS
Sbjct: 61  VWPLSSAQHLIAVVTEDTLIFRILPQRLGLYKLLSWGSLSFCS 103


>gi|113427916 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 103

 Score =  207 bits (527), Expect = 1e-54
 Identities = 102/103 (99%), Positives = 102/103 (99%)

Query: 1   MGPLGPKAEVGEMERRRGLGDSGSTSEACKLQGNEEQPLLKQSVKSVLALRASFYCPGKE 60
           MGPLGPKAEVGEMERRRGLGDSGSTSEACKLQGNEEQPLLKQSVKSVLALRASFYCPGKE
Sbjct: 1   MGPLGPKAEVGEMERRRGLGDSGSTSEACKLQGNEEQPLLKQSVKSVLALRASFYCPGKE 60

Query: 61  VWPLSSAQHLIAVVTEDTLIFRILPQRLGLYKLLSWGSLSFCS 103
           VWPLSSAQHLIAVVTEDTLIFRILPQRLGLYKLLSWG LSFCS
Sbjct: 61  VWPLSSAQHLIAVVTEDTLIFRILPQRLGLYKLLSWGGLSFCS 103


>gi|31377705 centrosomal protein 97kDa [Homo sapiens]
          Length = 865

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 1   MGPLGPKAEVGEMERRRGLGDSGSTSEACK------LQGNEEQPLLKQSVKSVLALRASF 54
           + PL P  E+       GL D G   E+ K      L   EEQPL   +  SV  +R+  
Sbjct: 412 LSPLSPTVELRLQGINLGLEDDGVADESVKGLESQVLDKEEEQPLWAANENSVQMMRSEI 471

Query: 55  YCPGKE---VWPLSSAQHLIAVVTEDTLIFRILPQ 86
                E   + P      + A++ +D       P+
Sbjct: 472 NTEVNEKAGLLPCPEPTIISAILKDDNHSLTFFPE 506


>gi|109134340 tubulin tyrosine ligase-like family, member 3 [Homo
           sapiens]
          Length = 772

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 1   MGPLGPKAEVGEMERRRGLGD 21
           + PL P   VG  +RRRGLGD
Sbjct: 697 LSPLKPLPLVGTFQRRRGLGD 717


>gi|8051584 ficolin 1 precursor [Homo sapiens]
          Length = 326

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 2   GPLGPKAEVGEMERRRGLGDSGSTSEAC 29
           GP+GPK + GE   R   GD+G  S++C
Sbjct: 85  GPVGPKGDRGEKGMRGEKGDAGQ-SQSC 111


>gi|156151415 phosphatidylcholine transfer protein isoform 1 [Homo
           sapiens]
          Length = 214

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 64  LSSAQHLIAVVTEDTLIFRILPQRLGLYKLLSWGSLSFCS 103
           L+ A   + V T    I+R+L ++ GLY+   +G L  CS
Sbjct: 25  LAGADWQLLVETSGISIYRLLDKKTGLYEYKVFGVLEDCS 64


>gi|163644316 hypothetical protein LOC23255 [Homo sapiens]
          Length = 1586

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 4    LGPKAEVGEMERRRGLGDSGSTSEACKLQGNEEQPL 39
            LGP  E G   R R     G  SE C+ +G E  P+
Sbjct: 1479 LGPGQETGTNSRGRSPSPIGVGSEMCREEGGEGTPV 1514


>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
          Length = 1441

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 6   PKAEVGEM-----ERRRGLGDSGSTSEACKLQGNEEQPLLKQSVKSVLALRASFYCPGKE 60
           P A+V E+     +++RG G+     E+  LQ  +++ +LK+S K   +  +     GK 
Sbjct: 784 PTAKVAEIRDQKADKKRGEGEDEVEEESTALQKTDKKEILKKSEKDTNSKVSKVKPKGKV 843

Query: 61  VW 62
            W
Sbjct: 844 RW 845


>gi|14110395 X-box binding protein 1 isoform XBP1(U) [Homo sapiens]
          Length = 261

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 5   GPKAEVGEMERRRGLGDSGSTSEACKLQGNEEQPLLKQSVKSVLALRASFYCPGKEVWPL 64
           G   E  E+ +R G+ D+    E  + +GNE +P+   +  + L LRA       ++ PL
Sbjct: 125 GLVVENQELRQRLGM-DALVAEEEAEAKGNEVRPVAGSAESAALRLRAPLQQVQAQLSPL 183

Query: 65  SS-AQHLIAVVT 75
            + +  ++AV+T
Sbjct: 184 QNISPWILAVLT 195


>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
            sapiens]
          Length = 2971

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 2    GPLGPKAEVGEMERRRGLGDSGSTSE 27
            GPLG K E GE   + G+G+ G   E
Sbjct: 2061 GPLGRKGEPGEPGPKGGIGNRGPRGE 2086


>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
            sapiens]
          Length = 3177

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 2    GPLGPKAEVGEMERRRGLGDSGSTSE 27
            GPLG K E GE   + G+G+ G   E
Sbjct: 2267 GPLGRKGEPGEPGPKGGIGNRGPRGE 2292


>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
            sapiens]
          Length = 2570

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 2    GPLGPKAEVGEMERRRGLGDSGSTSE 27
            GPLG K E GE   + G+G+ G   E
Sbjct: 1660 GPLGRKGEPGEPGPKGGIGNRGPRGE 1685


>gi|31542650 MANSC domain containing 1 [Homo sapiens]
          Length = 431

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 54  FYCPGKEVWPLSSAQHLIA--VVTEDTLIFRILPQR 87
           F+CP +E  PL  A+ L++  ++T+   + R LP +
Sbjct: 98  FFCPNEEACPLKPAKGLMSYRIITDFPSLTRNLPSQ 133


>gi|5453619 collectin sub-family member 10 [Homo sapiens]
          Length = 277

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 1  MGPLGPKAEVGEMERRRGLGDSG 23
          MGP G K E+G+M  R  +G +G
Sbjct: 70 MGPKGIKGELGDMGDRGNIGKTG 92


>gi|158534055 round spermatid basic protein 1-like [Homo sapiens]
          Length = 846

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 6   PKAEVGEMERRRGLGDSGSTSEACKLQGNEEQPLLKQSVKSVLALR 51
           PK +  +  RR GLG +     A + +  E +PL +  +K  +  R
Sbjct: 160 PKEKREKERRRHGLGGAREAGGASREENGEVKPLPRDKIKDKIKER 205


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,923,472
Number of Sequences: 37866
Number of extensions: 144762
Number of successful extensions: 564
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 20
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.