Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC729950 Sequence: fasta or formatted (103aa) NCBI GI: 113427916
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {103aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          6           1
 C cysteine            2.9          3           1
 D aspartate           1.9          2           1
 E glutamate           7.8          8           2
 F phenylalanine       2.9          3           1
 G glycine            10.7         11           2
 H histidine           1.0          1           1
 I isoleucine          2.9          3           1
 K lysine              5.8          6           1
 L leucine            15.5         16           2
 M methionine          1.9          2           1
 N asparagine          1.0          1           1
 P proline             5.8          6           1
 Q glutamine           4.9          5           1
 R arginine            5.8          6           3
 S serine             10.7         11           2
 T threonine           2.9          3           1
 V valine              5.8          6           2
 W tryptophan          1.9          2           1
 Y tyrosine            1.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729950             0.989   PREDICTED: hypothetical protein 
CEP97                 0.016   centrosomal protein 97kDa 
TTLL3                 0.016   tubulin tyrosine ligase-like family, member 3 [Homo...
FCN1                  0.016   ficolin 1 precursor 
KIAA0802              0.016   hypothetical protein LOC23255 
RSF1                  0.011   remodeling and spacing factor 1 
PCTP                  0.011   phosphatidylcholine transfer protein isoform 1 [Hom...
XBP1                  0.011   X-box binding protein 1 isoform XBP1(U) 
COL6A3                0.011   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.011   alpha 3 type VI collagen isoform 1 precursor 
COL6A3                0.011   alpha 3 type VI collagen isoform 4 precursor 
MANSC1                0.005   MANSC domain containing 1 
COLEC10               0.005   collectin sub-family member 10 
RSBN1L                0.005   round spermatid basic protein 1-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press