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Search of human proteins with 169208948
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169208948 PREDICTED: similar to COMM domain containing 4
[Homo sapiens]
(437 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169208948 PREDICTED: similar to COMM domain containing 4 [Hom... 896 0.0
gi|169208214 PREDICTED: similar to COMM domain containing 4 [Hom... 847 0.0
gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens] 254 8e-68
gi|21361661 COMM domain containing 4 [Homo sapiens] 218 7e-57
gi|239756356 PREDICTED: similar to hCG1731366 [Homo sapiens] 218 9e-57
gi|239745242 PREDICTED: similar to COMM domain containing 4 [Hom... 218 9e-57
gi|171543895 ataxin 2 [Homo sapiens] 33 0.39
gi|161019170 mucin 5AC [Homo sapiens] 32 1.5
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens] 32 1.5
gi|7706663 COMM domain containing 10 [Homo sapiens] 32 1.5
gi|239756093 PREDICTED: hypothetical protein [Homo sapiens] 31 2.5
gi|239750624 PREDICTED: hypothetical protein XP_002347476 [Homo ... 31 2.5
gi|211904177 hypothetical protein LOC388336 [Homo sapiens] 30 3.3
gi|207113199 erythrocyte membrane protein band 4.1-like 2 isofor... 30 5.6
gi|207113195 erythrocyte membrane protein band 4.1-like 2 isofor... 30 5.6
gi|4503579 erythrocyte membrane protein band 4.1-like 2 isoform ... 30 5.6
gi|22538453 phosphatidylinositol glycan anchor biosynthesis, cla... 29 7.4
gi|239756354 PREDICTED: hypothetical protein [Homo sapiens] 29 9.6
gi|239750880 PREDICTED: hypothetical protein XP_002347591 [Homo ... 29 9.6
gi|239745240 PREDICTED: hypothetical protein XP_002343395 [Homo ... 29 9.6
gi|38016937 lemur tyrosine kinase 2 [Homo sapiens] 29 9.6
gi|59710104 plexin A3 [Homo sapiens] 29 9.6
>gi|169208948 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 437
Score = 896 bits (2316), Expect = 0.0
Identities = 437/437 (100%), Positives = 437/437 (100%)
Query: 1 MYEAPGVKRAWAAGAGMRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPSLSRM 60
MYEAPGVKRAWAAGAGMRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPSLSRM
Sbjct: 1 MYEAPGVKRAWAAGAGMRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPSLSRM 60
Query: 61 GRRFRFCGDLDCPDRVLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDVKDQKLTADAKF 120
GRRFRFCGDLDCPDRVLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDVKDQKLTADAKF
Sbjct: 61 GRRFRFCGDLDCPDRVLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDVKDQKLTADAKF 120
Query: 121 ESGDVKATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKH 180
ESGDVKATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKH
Sbjct: 121 ESGDVKATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKH 180
Query: 181 LRVCSLRREYGSSPGLELRDLRIRGHIWQGGPAWSAHGQGRYHVGSPRPDTTAPVSPLHF 240
LRVCSLRREYGSSPGLELRDLRIRGHIWQGGPAWSAHGQGRYHVGSPRPDTTAPVSPLHF
Sbjct: 181 LRVCSLRREYGSSPGLELRDLRIRGHIWQGGPAWSAHGQGRYHVGSPRPDTTAPVSPLHF 240
Query: 241 HPAHHLHYALSLMNPSCQLLSAWLGSHADRSPLEHLEPKKLSLTFAIPGTRSLIMMKVDP 300
HPAHHLHYALSLMNPSCQLLSAWLGSHADRSPLEHLEPKKLSLTFAIPGTRSLIMMKVDP
Sbjct: 241 HPAHHLHYALSLMNPSCQLLSAWLGSHADRSPLEHLEPKKLSLTFAIPGTRSLIMMKVDP 300
Query: 301 NPLRGLKEQRLWRWPSSLVAIWLIHSSRWTLCPHVVQVPLCHLQTGHASPRASVPCYPAP 360
NPLRGLKEQRLWRWPSSLVAIWLIHSSRWTLCPHVVQVPLCHLQTGHASPRASVPCYPAP
Sbjct: 301 NPLRGLKEQRLWRWPSSLVAIWLIHSSRWTLCPHVVQVPLCHLQTGHASPRASVPCYPAP 360
Query: 361 TPRGRGTSGIGRRGLCVPEVQRNLVPAAVNPYVMIFLPALFRVLVLAAVFGQMDVSDASK 420
TPRGRGTSGIGRRGLCVPEVQRNLVPAAVNPYVMIFLPALFRVLVLAAVFGQMDVSDASK
Sbjct: 361 TPRGRGTSGIGRRGLCVPEVQRNLVPAAVNPYVMIFLPALFRVLVLAAVFGQMDVSDASK 420
Query: 421 VLMCSSTKAACKKEVAK 437
VLMCSSTKAACKKEVAK
Sbjct: 421 VLMCSSTKAACKKEVAK 437
>gi|169208214 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 422
Score = 847 bits (2189), Expect = 0.0
Identities = 416/422 (98%), Positives = 417/422 (98%), Gaps = 1/422 (0%)
Query: 17 MRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPSLSRMGRRFRFCGDLDCPDRV 76
MRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPSLSR+GRRFRFCGDLDCPDRV
Sbjct: 1 MRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPSLSRVGRRFRFCGDLDCPDRV 60
Query: 77 LAEISTLAKMSSVKLQLLCSQVLKELLGQGIDVKD-QKLTADAKFESGDVKATVAVLSFI 135
LAEISTLAKMSSVKLQLLCSQVLKELLGQGID K KLTADAKFESGDVKATVAVLSFI
Sbjct: 61 LAEISTLAKMSSVKLQLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFI 120
Query: 136 LSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLRREYGSSPG 195
LSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLRREYGSSPG
Sbjct: 121 LSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLRREYGSSPG 180
Query: 196 LELRDLRIRGHIWQGGPAWSAHGQGRYHVGSPRPDTTAPVSPLHFHPAHHLHYALSLMNP 255
LELRDLRIRGHIWQGGPAWSAHGQGRYHVGSPRPDTTAPVSPLHFHPAHHLHYALSLMNP
Sbjct: 181 LELRDLRIRGHIWQGGPAWSAHGQGRYHVGSPRPDTTAPVSPLHFHPAHHLHYALSLMNP 240
Query: 256 SCQLLSAWLGSHADRSPLEHLEPKKLSLTFAIPGTRSLIMMKVDPNPLRGLKEQRLWRWP 315
SCQLLSAWLGSHADRSPLEHLEPKKLSLTFAIPGTR LIMMKVDPNPLRGLKEQRLWRWP
Sbjct: 241 SCQLLSAWLGSHADRSPLEHLEPKKLSLTFAIPGTRPLIMMKVDPNPLRGLKEQRLWRWP 300
Query: 316 SSLVAIWLIHSSRWTLCPHVVQVPLCHLQTGHASPRASVPCYPAPTPRGRGTSGIGRRGL 375
SSLVAIWLIHSSRWTLCPHVVQVPLCHLQTGHASPRASVPCYPAPTPRGRGTSGIGRRGL
Sbjct: 301 SSLVAIWLIHSSRWTLCPHVVQVPLCHLQTGHASPRASVPCYPAPTPRGRGTSGIGRRGL 360
Query: 376 CVPEVQRNLVPAAVNPYVMIFLPALFRVLVLAAVFGQMDVSDASKVLMCSSTKAACKKEV 435
CVPEVQRNLVPAAVNPYVMIFLPALFRVLVLAAVFGQMDVSDASKVLMCSSTKAACKKEV
Sbjct: 361 CVPEVQRNLVPAAVNPYVMIFLPALFRVLVLAAVFGQMDVSDASKVLMCSSTKAACKKEV 420
Query: 436 AK 437
AK
Sbjct: 421 AK 422
>gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens]
Length = 456
Score = 254 bits (650), Expect = 8e-68
Identities = 173/337 (51%), Positives = 196/337 (58%), Gaps = 38/337 (11%)
Query: 11 WAAGAGMRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPS---LSRMGRRFRFC 67
W GR+ R++ T + RA + ++ PS + + RF FC
Sbjct: 101 WPVRGKDSGRRRRRRQHFAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFC 160
Query: 68 GDLDCPDRVLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDVKD-QKLTADAKFESGDVK 126
GDLDCPD VLAEISTLAKMSSVKL+LLCSQVLKELLGQGID K KLTADAKFESGDVK
Sbjct: 161 GDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVK 220
Query: 127 ATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSL 186
ATVAVLSF+LSG AKHSVDG+SLASELQQLGLPKEHAAS C CYEEKQSPLQKHLRVCSL
Sbjct: 221 ATVAVLSFMLSGTAKHSVDGESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSL 280
Query: 187 RR---------------EYGSSP---GLELRDLRI--RGHIWQ--------GGPAWSAHG 218
R + ++P G++ + G W+ G AWS
Sbjct: 281 RTWSLAARVAEGTAETVDPSAAPKTSGVQALACTVPHDGLGWRHPEEGGTHSGGAWSTKA 340
Query: 219 QGRY--HVGSPRPDTTAPVSPLHFHPAHHLHYALSLMNPSCQLLSAWL----GSHADRSP 272
+ H P P L L + + +LL L S A S
Sbjct: 341 PDCWGTHTHGPLLSDCWPFPSLDTRALGRGVTIPGLSSQAERLLGTRLLLLGLSSAAGST 400
Query: 273 LEHLEPKKLSLTFAIPGTRSLIMMKVDPNPLRGLKEQ 309
LEHLEPKKL LTF IPGT SLIMMK D NPLR LKEQ
Sbjct: 401 LEHLEPKKLPLTFMIPGTHSLIMMKADQNPLRCLKEQ 437
>gi|21361661 COMM domain containing 4 [Homo sapiens]
Length = 199
Score = 218 bits (556), Expect = 7e-57
Identities = 115/126 (91%), Positives = 118/126 (93%), Gaps = 1/126 (0%)
Query: 63 RFRFCGDLDCPDRVLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDV-KDQKLTADAKFE 121
RFRFCGDLDCPD VLAEISTLAKMSSVKL+LLCSQVLKELLGQGID K KLTADAKFE
Sbjct: 2 RFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFE 61
Query: 122 SGDVKATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHL 181
SGDVKATVAVLSFILS AAKHSVDG+SL+SELQQLGLPKEHAAS C CYEEKQSPLQKHL
Sbjct: 62 SGDVKATVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHL 121
Query: 182 RVCSLR 187
RVCSLR
Sbjct: 122 RVCSLR 127
>gi|239756356 PREDICTED: similar to hCG1731366 [Homo sapiens]
Length = 344
Score = 218 bits (555), Expect = 9e-57
Identities = 123/181 (67%), Positives = 135/181 (74%), Gaps = 4/181 (2%)
Query: 11 WAAGAGMRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPS---LSRMGRRFRFC 67
W GR+ R++ T + RA + ++ PS + + RF FC
Sbjct: 101 WPVRGKDSGRRRRRRQHFAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFC 160
Query: 68 GDLDCPDRVLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDVKD-QKLTADAKFESGDVK 126
GDLDCPD VLAEISTLAKMSSVKL+LLCSQVLKELLGQGID K KLTADAKFESGDVK
Sbjct: 161 GDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVK 220
Query: 127 ATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSL 186
ATVAVLSF+LSG AKHSVDG+SLASELQQLGLPKEHAAS C CYEEKQSPLQKHLRVCSL
Sbjct: 221 ATVAVLSFMLSGTAKHSVDGESLASELQQLGLPKEHAASLCHCYEEKQSPLQKHLRVCSL 280
Query: 187 R 187
R
Sbjct: 281 R 281
>gi|239745242 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 344
Score = 218 bits (555), Expect = 9e-57
Identities = 123/181 (67%), Positives = 135/181 (74%), Gaps = 4/181 (2%)
Query: 11 WAAGAGMRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPS---LSRMGRRFRFC 67
W GR+ R++ T + RA + ++ PS + + RF FC
Sbjct: 101 WPVRGKDSGRRRRRRQHFAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFC 160
Query: 68 GDLDCPDRVLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDVKD-QKLTADAKFESGDVK 126
GDLDCPD VLAEISTLAKMSSVKL+LLCSQVLKELLGQGID K KLTADAKFESGDVK
Sbjct: 161 GDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVK 220
Query: 127 ATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSL 186
ATVAVLSF+LSG AKHSVDG+SLASELQQLGLPKEHAAS C CYEEKQSPLQKHLRVCSL
Sbjct: 221 ATVAVLSFMLSGTAKHSVDGESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSL 280
Query: 187 R 187
R
Sbjct: 281 R 281
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 33.5 bits (75), Expect = 0.39
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 16/143 (11%)
Query: 225 GSPRPDTTAPVSPLHFHPAHHLHYALSLMNPSCQLLSAWLGSHADRSPLEHLEPKKL-SL 283
GS P + LH H H A P+ Q S GSH SP++H + + +L
Sbjct: 1127 GSLAQQYAHPNATLHPHTPHPQPSA----TPTGQQQSQHGGSHPAPSPVQHHQHQAAQAL 1182
Query: 284 TFAIPGTRSLI----MMKVDPNPLRGLKEQRLWR-WPSSLVAIWLIHSSR----WTLCPH 334
A P +S I + P+ Q +P++ ++ IH S +T PH
Sbjct: 1183 HLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPPH 1242
Query: 335 VVQVPLCHLQTG--HASPRASVP 355
+ VP H+Q+G + P A P
Sbjct: 1243 MAHVPQAHVQSGMVPSHPTAHAP 1265
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 31.6 bits (70), Expect = 1.5
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 341 CHLQTGHASPRASVPCY---PAPTPRGRGTSGIGRRGLCV-PEVQRNLVPAAVNP 391
C TGHA +S Y PA +P RG SG+ RG V P ++ V A NP
Sbjct: 20 CTRHTGHAQDGSSESSYKHHPALSPIARGPSGVPLRGATVFPSLRTIPVVRASNP 74
>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
Length = 2013
Score = 31.6 bits (70), Expect = 1.5
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 341 CHLQTGHASPRASVPCY---PAPTPRGRGTSGIGRRGLCV-PEVQRNLVPAAVNP 391
C TGHA +S Y PA +P RG SG+ RG V P ++ V A NP
Sbjct: 20 CTRHTGHAQDGSSESSYKHHPALSPIARGPSGVPLRGATVFPSLRTIPVVRASNP 74
>gi|7706663 COMM domain containing 10 [Homo sapiens]
Length = 202
Score = 31.6 bits (70), Expect = 1.5
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 110 KDQKLTADAKFESGDVKATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHA 163
+++KL A E D+ + +SFIL A H+V +L +L+ + L ++ A
Sbjct: 53 EEEKLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKA 106
>gi|239756093 PREDICTED: hypothetical protein [Homo sapiens]
Length = 343
Score = 30.8 bits (68), Expect = 2.5
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 208 WQGGPAWSAHGQGRYHVGSPRPDTTAPVSP-LHFHPAHHL 246
+Q P W HG + G+P +P HFHP+ HL
Sbjct: 212 FQDTPLWREHGHLSHGAGAPSSGQVVTRAPAYHFHPSAHL 251
>gi|239750624 PREDICTED: hypothetical protein XP_002347476 [Homo
sapiens]
Length = 343
Score = 30.8 bits (68), Expect = 2.5
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 208 WQGGPAWSAHGQGRYHVGSPRPDTTAPVSP-LHFHPAHHL 246
+Q P W HG + G+P +P HFHP+ HL
Sbjct: 212 FQDTPLWREHGHLSHGAGAPSSGQVVTRAPAYHFHPSAHL 251
>gi|211904177 hypothetical protein LOC388336 [Homo sapiens]
Length = 551
Score = 30.4 bits (67), Expect = 3.3
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 149 LASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLRREYGSSPGLE-LRDLRIRGHI 207
+ S+ Q L + H+ P E P Q R S + S+P L+ R ++ H
Sbjct: 440 ILSDEQLLSTERLHSQDPLLSPERTAFPEQSLSRAISHTDVFVSTPVLDRYRMSKMHSHP 499
Query: 208 WQGGPAWSAHGQG-----RYHVGSPRPDTTAPVSPLHFHPAHHLHYALS 251
+++ GQ R+ S R +T V LH+ P HH Y S
Sbjct: 500 SASNNSYATLGQSQTAAKRHAFASRRHNT---VEQLHYIPGHHTCYTAS 545
>gi|207113199 erythrocyte membrane protein band 4.1-like 2 isoform b
[Homo sapiens]
Length = 673
Score = 29.6 bits (65), Expect = 5.6
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 50 EKSPPPSLSRMGRRFRFCGDLDCPDRVLAEISTLAKMSSVKLQLLCSQ-VLKELLGQGID 108
E+ P +G +FR+ G R + STL + + S+ V + L G I
Sbjct: 501 EQPPKAKFLTLGSKFRYSGRTQAQTR---QASTLIDRPAPHFERTSSKRVSRSLDGAPIG 557
Query: 109 VKDQKLTADAKFESGDVKA---TVAVLSFILSGAAKHSVDGKSLASELQ 154
V DQ L D +G++ A + ++ + G + V + A LQ
Sbjct: 558 VMDQSLMKDFPGAAGEISAYGPGLVSIAVVQDGDGRREVRSPTKAPHLQ 606
>gi|207113195 erythrocyte membrane protein band 4.1-like 2 isoform b
[Homo sapiens]
Length = 673
Score = 29.6 bits (65), Expect = 5.6
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 50 EKSPPPSLSRMGRRFRFCGDLDCPDRVLAEISTLAKMSSVKLQLLCSQ-VLKELLGQGID 108
E+ P +G +FR+ G R + STL + + S+ V + L G I
Sbjct: 501 EQPPKAKFLTLGSKFRYSGRTQAQTR---QASTLIDRPAPHFERTSSKRVSRSLDGAPIG 557
Query: 109 VKDQKLTADAKFESGDVKA---TVAVLSFILSGAAKHSVDGKSLASELQ 154
V DQ L D +G++ A + ++ + G + V + A LQ
Sbjct: 558 VMDQSLMKDFPGAAGEISAYGPGLVSIAVVQDGDGRREVRSPTKAPHLQ 606
>gi|4503579 erythrocyte membrane protein band 4.1-like 2 isoform a
[Homo sapiens]
Length = 1005
Score = 29.6 bits (65), Expect = 5.6
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 50 EKSPPPSLSRMGRRFRFCGDLDCPDRVLAEISTLAKMSSVKLQLLCSQ-VLKELLGQGID 108
E+ P +G +FR+ G R + STL + + S+ V + L G I
Sbjct: 501 EQPPKAKFLTLGSKFRYSGRTQAQTR---QASTLIDRPAPHFERTSSKRVSRSLDGAPIG 557
Query: 109 VKDQKLTADAKFESGDVKA---TVAVLSFILSGAAKHSVDGKSLASELQ 154
V DQ L D +G++ A + ++ + G + V + A LQ
Sbjct: 558 VMDQSLMKDFPGAAGEISAYGPGLVSIAVVQDGDGRREVRSPTKAPHLQ 606
>gi|22538453 phosphatidylinositol glycan anchor biosynthesis, class
Q isoform 1 [Homo sapiens]
Length = 760
Score = 29.3 bits (64), Expect = 7.4
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 303 LRGLKEQRLWRWPSSLVAIWLIHSSRWTLCPHVVQVPLC--HLQTGHASPRASVPCYPAP 360
L + +++W WP+ L A+ H W +P C H H++PR C P P
Sbjct: 613 LEVIGSEQMWGWPARLAALHHWHCLPWD------PLPTCCGHHGGEHSNPRCPEHC-PMP 665
Query: 361 T 361
T
Sbjct: 666 T 666
>gi|239756354 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 28.9 bits (63), Expect = 9.6
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 4 APGVKRAWAAGAGMRG---RQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPS 56
AP + A AG+R RQW R+ + CT CA + AA +SP PS
Sbjct: 20 APVAREGPARRAGLRSPRERQWRRRLLARNCTA------CAALPAAPAPSRSPDPS 69
>gi|239750880 PREDICTED: hypothetical protein XP_002347591 [Homo
sapiens]
Length = 110
Score = 28.9 bits (63), Expect = 9.6
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 4 APGVKRAWAAGAGMRG---RQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPS 56
AP + A AG+R RQW R+ + CT CA + AA +SP PS
Sbjct: 20 APVAREGPARRAGLRSPRERQWRRRLLARNCTA------CAALPAAPAPSRSPDPS 69
>gi|239745240 PREDICTED: hypothetical protein XP_002343395 [Homo
sapiens]
Length = 110
Score = 28.9 bits (63), Expect = 9.6
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 4 APGVKRAWAAGAGMRG---RQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPS 56
AP + A AG+R RQW R+ + CT CA + AA +SP PS
Sbjct: 20 APVAREGPARRAGLRSPRERQWRRRLLARNCTA------CAALPAAPAPSRSPDPS 69
>gi|38016937 lemur tyrosine kinase 2 [Homo sapiens]
Length = 1503
Score = 28.9 bits (63), Expect = 9.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 69 DLDCPDRVLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDVKDQKLTADAKFESG 123
D+D P+R E+S L + SV+L+ S ++ D KD L D SG
Sbjct: 575 DMDNPERTGPELSQLTALRSVELEE--SSTDEDFFQSSTDPKDSSLPGDLHVTSG 627
>gi|59710104 plexin A3 [Homo sapiens]
Length = 1871
Score = 28.9 bits (63), Expect = 9.6
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 340 LCHLQTGHASPRASVPCYPAPTPRGRGTSGI--GRRGLCVPEVQRNLVPAA 388
L H+QT + R+S YP P+ G SG+ + G V +NL+PAA
Sbjct: 1105 LDHVQTARSLNRSSFTYYPDPSFEPLGPSGVLDVKPGSHVVLKGKNLIPAA 1155
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,071,206
Number of Sequences: 37866
Number of extensions: 971397
Number of successful extensions: 2583
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2569
Number of HSP's gapped (non-prelim): 25
length of query: 437
length of database: 18,247,518
effective HSP length: 105
effective length of query: 332
effective length of database: 14,271,588
effective search space: 4738167216
effective search space used: 4738167216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.