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Search of human proteins with 169206362
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169206362 PREDICTED: similar to ribosomal protein L23a [Homo
sapiens]
(152 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169206362 PREDICTED: similar to ribosomal protein L23a [Homo ... 301 1e-82
gi|17105394 ribosomal protein L23a [Homo sapiens] 135 2e-32
gi|239749228 PREDICTED: hypothetical protein XP_002346971 [Homo ... 75 2e-14
gi|239743319 PREDICTED: hypothetical protein XP_002342821 [Homo ... 75 2e-14
gi|239753756 PREDICTED: similar to hCG1776279 [Homo sapiens] 68 3e-12
gi|239748324 PREDICTED: similar to hCG1776279 [Homo sapiens] 68 3e-12
gi|239742221 PREDICTED: hypothetical protein XP_002342458 [Homo ... 68 3e-12
gi|4501853 acetyl-Coenzyme A acyltransferase 1 isoform a [Homo s... 30 0.79
gi|9558749 elongation factor-2 kinase [Homo sapiens] 29 1.4
gi|194353979 acetyl-Coenzyme A acyltransferase 1 isoform b [Homo... 29 1.8
gi|7706617 glycerophosphodiester phosphodiesterase 1 [Homo sapiens] 28 2.3
gi|154275767 ADAMTS-like 1 isoform 4 precursor [Homo sapiens] 28 3.9
gi|212549753 calcium/calmodulin-dependent protein kinase II delt... 27 5.1
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 27 5.1
gi|163659918 sacsin [Homo sapiens] 27 6.7
gi|21264343 scaffold attachment factor B [Homo sapiens] 27 6.7
gi|212549756 calcium/calmodulin-dependent protein kinase II delt... 27 6.7
gi|26667183 calcium/calmodulin-dependent protein kinase II delta... 27 6.7
gi|26667186 calcium/calmodulin-dependent protein kinase II delta... 27 6.7
gi|26667189 calcium/calmodulin-dependent protein kinase II delta... 27 6.7
gi|26667180 calcium/calmodulin-dependent protein kinase II delta... 27 6.7
gi|4885409 high density lipoprotein binding protein [Homo sapiens] 27 6.7
gi|42716280 high density lipoprotein binding protein [Homo sapiens] 27 6.7
>gi|169206362 PREDICTED: similar to ribosomal protein L23a [Homo
sapiens]
Length = 152
Score = 301 bits (771), Expect = 1e-82
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MSLTSDSFPASARAGPRFFNVSVSPQHGESTEEWDQLCFLLPSVSQQLQAHKAKAKAPAG 60
MSLTSDSFPASARAGPRFFNVSVSPQHGESTEEWDQLCFLLPSVSQQLQAHKAKAKAPAG
Sbjct: 1 MSLTSDSFPASARAGPRFFNVSVSPQHGESTEEWDQLCFLLPSVSQQLQAHKAKAKAPAG 60
Query: 61 DLDYAIIKFPLTAESAVKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLICP 120
DLDYAIIKFPLTAESAVKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLICP
Sbjct: 61 DLDYAIIKFPLTAESAVKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLICP 120
Query: 121 DKEKKAYVRLAPDYDALDVATKLGSSKLSPAG 152
DKEKKAYVRLAPDYDALDVATKLGSSKLSPAG
Sbjct: 121 DKEKKAYVRLAPDYDALDVATKLGSSKLSPAG 152
>gi|17105394 ribosomal protein L23a [Homo sapiens]
Length = 156
Score = 135 bits (339), Expect = 2e-32
Identities = 68/81 (83%), Positives = 72/81 (88%)
Query: 64 YAIIKFPLTAESAVKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLICPDKE 123
YAIIKFPLT ESA+KK E+NNTLVF VDVKA KHQI+QAVKKLYD DVAKV TLI PD E
Sbjct: 74 YAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGE 133
Query: 124 KKAYVRLAPDYDALDVATKLG 144
KKAYVRLAPDYDALDVA K+G
Sbjct: 134 KKAYVRLAPDYDALDVANKIG 154
>gi|239749228 PREDICTED: hypothetical protein XP_002346971 [Homo
sapiens]
Length = 87
Score = 75.5 bits (184), Expect = 2e-14
Identities = 42/72 (58%), Positives = 51/72 (70%)
Query: 77 VKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLICPDKEKKAYVRLAPDYDA 136
+KK E+NNTLVFTVDVKA KHQI+QAVKKLYD+DVAKV LI PD ++ +
Sbjct: 1 MKKIEDNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVHALIRPDAGRRHKLHWLLITML 60
Query: 137 LDVATKLGSSKL 148
+ TKLGS+ L
Sbjct: 61 WILPTKLGSTLL 72
>gi|239743319 PREDICTED: hypothetical protein XP_002342821 [Homo
sapiens]
Length = 87
Score = 75.5 bits (184), Expect = 2e-14
Identities = 42/72 (58%), Positives = 51/72 (70%)
Query: 77 VKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLICPDKEKKAYVRLAPDYDA 136
+KK E+NNTLVFTVDVKA KHQI+QAVKKLYD+DVAKV LI PD ++ +
Sbjct: 1 MKKIEDNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVHALIRPDAGRRHKLHWLLITML 60
Query: 137 LDVATKLGSSKL 148
+ TKLGS+ L
Sbjct: 61 WILPTKLGSTLL 72
>gi|239753756 PREDICTED: similar to hCG1776279 [Homo sapiens]
Length = 133
Score = 67.8 bits (164), Expect = 3e-12
Identities = 41/73 (56%), Positives = 48/73 (65%), Gaps = 7/73 (9%)
Query: 72 TAESAVKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLICPDKEKKAYVRLA 131
TA A KTE NTLVFTVDVKA KHQ+ QA+K+ +D VAKV T E++ LA
Sbjct: 66 TAGEAAMKTE-GNTLVFTVDVKANKHQMEQAMKEFHDICVAKVNT------EEEGMCPLA 118
Query: 132 PDYDALDVATKLG 144
PD ALDVA K+G
Sbjct: 119 PDDHALDVANKIG 131
>gi|239748324 PREDICTED: similar to hCG1776279 [Homo sapiens]
Length = 133
Score = 67.8 bits (164), Expect = 3e-12
Identities = 41/73 (56%), Positives = 48/73 (65%), Gaps = 7/73 (9%)
Query: 72 TAESAVKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLICPDKEKKAYVRLA 131
TA A KTE NTLVFTVDVKA KHQ+ QA+K+ +D VAKV T E++ LA
Sbjct: 66 TAGEAAMKTE-GNTLVFTVDVKANKHQMEQAMKEFHDICVAKVNT------EEEGMCPLA 118
Query: 132 PDYDALDVATKLG 144
PD ALDVA K+G
Sbjct: 119 PDDHALDVANKIG 131
>gi|239742221 PREDICTED: hypothetical protein XP_002342458 [Homo
sapiens]
Length = 133
Score = 67.8 bits (164), Expect = 3e-12
Identities = 41/73 (56%), Positives = 48/73 (65%), Gaps = 7/73 (9%)
Query: 72 TAESAVKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLICPDKEKKAYVRLA 131
TA A KTE NTLVFTVDVKA KHQ+ QA+K+ +D VAKV T E++ LA
Sbjct: 66 TAGEAAMKTE-GNTLVFTVDVKANKHQMEQAMKEFHDICVAKVNT------EEEGMCPLA 118
Query: 132 PDYDALDVATKLG 144
PD ALDVA K+G
Sbjct: 119 PDDHALDVANKIG 131
>gi|4501853 acetyl-Coenzyme A acyltransferase 1 isoform a [Homo
sapiens]
Length = 424
Score = 30.0 bits (66), Expect = 0.79
Identities = 19/86 (22%), Positives = 38/86 (44%)
Query: 66 IIKFPLTAESAVKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLICPDKEKK 125
+I +T+E+ ++ + T + +++ R K + +++ VTT + DK K
Sbjct: 178 LIPMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTK 237
Query: 126 AYVRLAPDYDALDVATKLGSSKLSPA 151
+ + D T G +KL PA
Sbjct: 238 RSITVTQDEGIRPSTTMEGLAKLKPA 263
>gi|9558749 elongation factor-2 kinase [Homo sapiens]
Length = 725
Score = 29.3 bits (64), Expect = 1.4
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 29 ESTEEWDQLCFLLPSVSQQLQAHKAKAKAPAG-DLDYAIIKFPLTAESAVKKTEENNTLV 87
E EEWDQ + + A+ + +A G L Y+ + + A+ ++K+TEEN T
Sbjct: 541 EKGEEWDQESAVF---HLEHAANLGELEAIVGLGLMYSQLPHHILADVSLKETEENKTKG 597
Query: 88 FTVDVKAKKHQIRQA---VKKLYDS 109
F +KA + RQ+ V + +DS
Sbjct: 598 FDYLLKAAEAGDRQSMILVARAFDS 622
>gi|194353979 acetyl-Coenzyme A acyltransferase 1 isoform b [Homo
sapiens]
Length = 331
Score = 28.9 bits (63), Expect = 1.8
Identities = 18/81 (22%), Positives = 36/81 (44%)
Query: 71 LTAESAVKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLICPDKEKKAYVRL 130
+T+E+ ++ + T + +++ R K + +++ VTT + DK K + +
Sbjct: 150 ITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITV 209
Query: 131 APDYDALDVATKLGSSKLSPA 151
D T G +KL PA
Sbjct: 210 TQDEGIRPSTTMEGLAKLKPA 230
>gi|7706617 glycerophosphodiester phosphodiesterase 1 [Homo sapiens]
Length = 331
Score = 28.5 bits (62), Expect = 2.3
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 63 DYAIIKFPLTAESAVKKTEENNTLVFTVDVKAKKHQIRQAVKKLY 107
D+ K P E+ + N T+ F DVK H+ +A+KK+Y
Sbjct: 148 DFPDEKIPTLREAVAECLNHNLTIFF--DVKGHAHKATEALKKMY 190
>gi|154275767 ADAMTS-like 1 isoform 4 precursor [Homo sapiens]
Length = 1762
Score = 27.7 bits (60), Expect = 3.9
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 96 KHQIRQAVKKLYDSDVAKVTTLICPDKEKKAYVRLAPDYDALDVATKLGSSKLSPAG 152
KH + Q ++++ S + TL+ P + + + V L+P ++ L +S AG
Sbjct: 1098 KHLVAQLAQEIFRSHLEHQDTLLKPSERRTSPVTLSPHKHVSGFSSSLRTSSTGDAG 1154
>gi|212549753 calcium/calmodulin-dependent protein kinase II delta
isoform 5 [Homo sapiens]
Length = 492
Score = 27.3 bits (59), Expect = 5.1
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 45 SQQLQAHKAKAKAPAGDLDYAIIKFPLTA-----ESAVKKTEENNTLVFTVDVKAKKHQI 99
++ A K+ K P G +K P T + + TE +NT + DVKA+K +I
Sbjct: 311 TRNFSAAKSLLKKPDG------VKEPQTTVIHNPDGNKESTESSNTTIEDEDVKARKQEI 364
Query: 100 RQAVKKLYDS 109
+ ++L ++
Sbjct: 365 IKVTEQLIEA 374
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 27.3 bits (59), Expect = 5.1
Identities = 39/142 (27%), Positives = 55/142 (38%), Gaps = 32/142 (22%)
Query: 24 SPQHGESTEEWDQLCFLLPSVSQQLQAHKAKAKAPAGDLDYAIIKFPLTAESAVKKTEEN 83
+P +E W L FLLP V L++ ++ + I TAE + K E
Sbjct: 384 TPLQNNLSELWSLLNFLLPDVFDDLKSFESW---------FDITSLSETAEDIIAKEREQ 434
Query: 84 NTLVFTVDVKAKKHQI-RQAVKKLYDSDVAKVTTLICPDKEKKAYVRLAPD----YDAL- 137
N L HQI + + SDVA + P +E Y L+ Y A+
Sbjct: 435 NVLHML-------HQILTPFLLRRLKSDVA---LEVPPKREVVVYAPLSKKQEIFYTAIV 484
Query: 138 --DVATKLGSS-----KLSPAG 152
+A GSS +LSP G
Sbjct: 485 NRTIANMFGSSEKETIELSPTG 506
>gi|163659918 sacsin [Homo sapiens]
Length = 4579
Score = 26.9 bits (58), Expect = 6.7
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 74 ESAVKKTEEN---NTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLI---CPDKEKKAY 127
E +V+ EN TL TVD+ H I Q L + K +LI CP++ +
Sbjct: 3606 EISVRANTENWSKETLQNTVDILL--HHIFQERMDLLSGNFLKELSLIPFLCPERAPAEF 3663
Query: 128 VRLAPDYDALD 138
+R P Y ++
Sbjct: 3664 IRFHPQYQEVN 3674
>gi|21264343 scaffold attachment factor B [Homo sapiens]
Length = 915
Score = 26.9 bits (58), Expect = 6.7
Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 41 LPSVSQQLQAHKAKAKAPAGDLDYAIIKFPLTAESAVKKTE-ENNTLVFTVDVKAKKHQI 99
+ + +QLQ H + K +LD + F + E E EN ++ + K +
Sbjct: 171 MKELPEQLQEHAIEDKETINNLDTSSSDFTILQEIEEPSLEPENEKILDILGETCKSEPV 230
Query: 100 RQAVKKLYDSDVAKVTTLICPDK----EKKAYVRLAPDYDALDVATK 142
++ +L + A+ T+ + PD+ E+ + P+ LD+A++
Sbjct: 231 KEESSEL-EQPFAQDTSSVGPDRKLAEEEDLFDSAHPEEGDLDLASE 276
>gi|212549756 calcium/calmodulin-dependent protein kinase II delta
isoform 4 [Homo sapiens]
Length = 489
Score = 26.9 bits (58), Expect = 6.7
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 77 VKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDS 109
++ TE +NT + DVKA+K +I + ++L ++
Sbjct: 339 MESTESSNTTIEDEDVKARKQEIIKVTEQLIEA 371
>gi|26667183 calcium/calmodulin-dependent protein kinase II delta
isoform 1 [Homo sapiens]
Length = 478
Score = 26.9 bits (58), Expect = 6.7
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 63 DYAIIKFPLTAESAVKK-TEENNTLVFTVDVKAKKHQIRQAVKKLYDS 109
+++ K L VK+ TE +NT + DVKA+K +I + ++L ++
Sbjct: 313 NFSAAKSLLKKPDGVKESTESSNTTIEDEDVKARKQEIIKVTEQLIEA 360
>gi|26667186 calcium/calmodulin-dependent protein kinase II delta
isoform 1 [Homo sapiens]
Length = 478
Score = 26.9 bits (58), Expect = 6.7
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 63 DYAIIKFPLTAESAVKK-TEENNTLVFTVDVKAKKHQIRQAVKKLYDS 109
+++ K L VK+ TE +NT + DVKA+K +I + ++L ++
Sbjct: 313 NFSAAKSLLKKPDGVKESTESSNTTIEDEDVKARKQEIIKVTEQLIEA 360
>gi|26667189 calcium/calmodulin-dependent protein kinase II delta
isoform 2 [Homo sapiens]
Length = 478
Score = 26.9 bits (58), Expect = 6.7
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 63 DYAIIKFPLTAESAVKK-TEENNTLVFTVDVKAKKHQIRQAVKKLYDS 109
+++ K L VK+ TE +NT + DVKA+K +I + ++L ++
Sbjct: 313 NFSAAKSLLKKPDGVKESTESSNTTIEDEDVKARKQEIIKVTEQLIEA 360
>gi|26667180 calcium/calmodulin-dependent protein kinase II delta
isoform 3 [Homo sapiens]
Length = 499
Score = 26.9 bits (58), Expect = 6.7
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 63 DYAIIKFPLTAESAVKK-TEENNTLVFTVDVKAKKHQIRQAVKKLYDS 109
+++ K L VK+ TE +NT + DVKA+K +I + ++L ++
Sbjct: 313 NFSAAKSLLKKPDGVKESTESSNTTIEDEDVKARKQEIIKVTEQLIEA 360
>gi|4885409 high density lipoprotein binding protein [Homo sapiens]
Length = 1268
Score = 26.9 bits (58), Expect = 6.7
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 63 DYAIIKFPLTAESAVKK-----TEENNTLVFTVDVKAKKHQIR-------QAVKKLYDSD 110
D +I+ P + KK EE T FTVD++AK + ++K+ DS
Sbjct: 698 DTVVIRGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDST 757
Query: 111 VAKVTTLICPDKEK 124
A+V DK++
Sbjct: 758 GARVIFPAAEDKDQ 771
>gi|42716280 high density lipoprotein binding protein [Homo sapiens]
Length = 1268
Score = 26.9 bits (58), Expect = 6.7
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 63 DYAIIKFPLTAESAVKK-----TEENNTLVFTVDVKAKKHQIR-------QAVKKLYDSD 110
D +I+ P + KK EE T FTVD++AK + ++K+ DS
Sbjct: 698 DTVVIRGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDST 757
Query: 111 VAKVTTLICPDKEK 124
A+V DK++
Sbjct: 758 GARVIFPAAEDKDQ 771
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.127 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,323,795
Number of Sequences: 37866
Number of extensions: 194764
Number of successful extensions: 409
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 26
length of query: 152
length of database: 18,247,518
effective HSP length: 93
effective length of query: 59
effective length of database: 14,725,980
effective search space: 868832820
effective search space used: 868832820
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.