Guide to the Human Genome
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Name: LOC729492 Sequence: fasta or formatted (179aa) NCBI GI: 169202107
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {158aa} PREDICTED: hypothetical protein
alt mRNA {179aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         13           2
 C cysteine            1.1          2           1
 D aspartate           4.5          8           1
 E glutamate           8.4         15           2
 F phenylalanine       4.5          8           2
 G glycine             7.3         13           1
 H histidine           2.8          5           1
 I isoleucine          1.7          3           1
 K lysine              2.2          4           1
 L leucine            11.2         20           2
 M methionine          3.9          7           1
 N asparagine          2.8          5           1
 P proline            10.1         18           2
 Q glutamine           3.4          6           1
 R arginine            6.1         11           2
 S serine              9.5         17           2
 T threonine           5.6         10           1
 V valine              5.0          9           2
 W tryptophan          2.8          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729492             1.000   PREDICTED: hypothetical protein 
LOC729492             0.888   PREDICTED: hypothetical protein 
TTN                   0.014   titin isoform N2-A 
TTN                   0.014   titin isoform novex-2 
TTN                   0.014   titin isoform novex-1 
TTN                   0.014   titin isoform N2-B 
TTN                   0.012   titin isoform novex-3 
NAB2                  0.012   NGFI-A binding protein 2 
NEDD9                 0.012   neural precursor cell expressed, developmentally do...
NEDD9                 0.012   neural precursor cell expressed, developmentally down...
RNF157                0.009   ring finger protein 157 
GAB2                  0.009   GRB2-associated binding protein 2 isoform b 
GAB2                  0.009   GRB2-associated binding protein 2 isoform a 
BMF                   0.009   Bcl2 modifying factor isoform bmf-2 
BMF                   0.009   Bcl2 modifying factor isoform bmf-1 
BMF                   0.009   Bcl2 modifying factor isoform bmf-1 
TNS1                  0.009   tensin 
DZIP1L                0.009   DAZ interacting protein 1-like 
SGIP1                 0.006   SH3-domain GRB2-like (endophilin) interacting prote...
MMP25                 0.006   matrix metalloproteinase 25 preproprotein 
MAML1                 0.006   mastermind-like 1 
GAB3                  0.006   Gab3 protein isoform 1 
GAB3                  0.006   Gab3 protein isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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