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Search of human proteins with 169194706
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169194706 PREDICTED: hypothetical protein [Homo sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169194706 PREDICTED: hypothetical protein [Homo sapiens] 482 e-136
gi|169201915 PREDICTED: hypothetical protein [Homo sapiens] 482 e-136
gi|169191953 PREDICTED: hypothetical protein [Homo sapiens] 482 e-136
gi|169212153 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|169211716 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|169211169 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|239757723 PREDICTED: hypothetical protein [Homo sapiens] 45 4e-05
gi|239752210 PREDICTED: hypothetical protein [Homo sapiens] 45 4e-05
gi|239746733 PREDICTED: hypothetical protein [Homo sapiens] 45 5e-05
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 38 0.008
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 38 0.008
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 38 0.008
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens] 38 0.008
gi|27262651 ataxin 2 related protein isoform D [Homo sapiens] 38 0.008
gi|156616271 kinesin family member 19 [Homo sapiens] 35 0.053
gi|92859678 small nuclear RNA activating complex, polypeptide 4,... 35 0.053
gi|222080107 solute carrier family 23 (nucleobase transporters),... 35 0.070
gi|222080105 solute carrier family 23 (nucleobase transporters),... 35 0.070
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 33 0.16
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 33 0.16
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 32 0.35
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 32 0.35
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 32 0.35
gi|8659574 transcription factor E3 [Homo sapiens] 32 0.59
gi|109148522 insulin- insulin-like growth factor 2 [Homo sapiens] 32 0.59
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 31 0.77
gi|50301236 forkhead box J1 [Homo sapiens] 31 0.77
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 30 1.3
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 30 1.3
gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 30 1.3
>gi|169194706 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 482 bits (1240), Expect = e-136
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV
Sbjct: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
Query: 61 ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW 120
ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW
Sbjct: 61 ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW 120
Query: 121 LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK 180
LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK
Sbjct: 121 LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK 180
Query: 181 QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP 229
QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP
Sbjct: 181 QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP 229
>gi|169201915 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 482 bits (1240), Expect = e-136
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV
Sbjct: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
Query: 61 ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW 120
ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW
Sbjct: 61 ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW 120
Query: 121 LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK 180
LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK
Sbjct: 121 LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK 180
Query: 181 QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP 229
QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP
Sbjct: 181 QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP 229
>gi|169191953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 482 bits (1240), Expect = e-136
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV
Sbjct: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
Query: 61 ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW 120
ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW
Sbjct: 61 ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW 120
Query: 121 LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK 180
LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK
Sbjct: 121 LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK 180
Query: 181 QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP 229
QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP
Sbjct: 181 QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP 229
>gi|169212153 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 46.2 bits (108), Expect = 2e-05
Identities = 35/83 (42%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
MEPV AGDK EP PFQV G QAQL + P S LG+ A A P
Sbjct: 112 MEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGL----RPRHSCALGSQEKAGAPPSQAQ 167
Query: 61 ATLL--WLQIQASLHSQGSRKAP 81
LQ QA LHS G + P
Sbjct: 168 LEPFKPQLQTQAPLHSWGLGRPP 190
>gi|169211716 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 46.2 bits (108), Expect = 2e-05
Identities = 35/83 (42%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
MEPV AGDK EP PFQV G QAQL + P S LG+ A A P
Sbjct: 112 MEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGL----RPRHSCALGSQEKAGAPPSQAQ 167
Query: 61 ATLL--WLQIQASLHSQGSRKAP 81
LQ QA LHS G + P
Sbjct: 168 LEPFKPQLQTQAPLHSWGLGRPP 190
>gi|169211169 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 46.2 bits (108), Expect = 2e-05
Identities = 35/83 (42%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
MEPV AGDK EP PFQV G QAQL + P S LG+ A A P
Sbjct: 112 MEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGL----RPRHSCALGSQEKAGAPPSQAQ 167
Query: 61 ATLL--WLQIQASLHSQGSRKAP 81
LQ QA LHS G + P
Sbjct: 168 LEPFKPQLQTQAPLHSWGLGRPP 190
>gi|239757723 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 45.4 bits (106), Expect = 4e-05
Identities = 39/96 (40%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 1 MEPVGAGDKHEPCPFQVDGVGAYQA-QLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGIT 59
ME A DK E PFQV ++ QLP + TQA LCS AP
Sbjct: 29 MEKAKARDKRETRPFQVGVRASWMLLQLP---KPWLQTQASLCSQGPEGQVGAPPSQAQL 85
Query: 60 VATLLWLQIQASLHSQGSRKAPFPPRAQ----EAPA 91
WLQ QASLHS G RKAP +Q E PA
Sbjct: 86 QLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGPA 121
>gi|239752210 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 45.4 bits (106), Expect = 4e-05
Identities = 39/96 (40%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 1 MEPVGAGDKHEPCPFQVDGVGAYQA-QLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGIT 59
ME A DK E PFQV ++ QLP + TQA LCS AP
Sbjct: 29 MEKAKARDKRETRPFQVGVRASWMLLQLP---KPWLQTQASLCSQGPEGQVGAPPSQAQL 85
Query: 60 VATLLWLQIQASLHSQGSRKAPFPPRAQ----EAPA 91
WLQ QASLHS G RKAP +Q E PA
Sbjct: 86 QLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGPA 121
>gi|239746733 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 45.1 bits (105), Expect = 5e-05
Identities = 37/95 (38%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
ME A DK E PFQV ++ P TQA LCS AP
Sbjct: 29 MEKAKARDKRETRPFQVGVRASWMLLQPPKPWLQ--TQASLCSQGPEGQVGAPPSQAQLQ 86
Query: 61 ATLLWLQIQASLHSQGSRKAPFPPRAQ----EAPA 91
WLQ QASLHS G RKAP +Q E PA
Sbjct: 87 LPKPWLQTQASLHSWGPRKAPLVAGSQGPQTEGPA 121
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 37.7 bits (86), Expect = 0.008
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 128 AVLICPPPTPLACSRLWVPISMEGR-LRKGCSGQLGASLQVPPQHEQPGCHKQKQGAKKL 186
A PP P A S P++ G LR+G G L PQ P H+++ GA +
Sbjct: 43 ATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILA------PQPPPPQQHQERPGAAAI 96
Query: 187 LGRKGEVPGEAPPSS 201
+G+ G+ PP S
Sbjct: 97 GSARGQSTGKGPPQS 111
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 37.7 bits (86), Expect = 0.008
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 128 AVLICPPPTPLACSRLWVPISMEGR-LRKGCSGQLGASLQVPPQHEQPGCHKQKQGAKKL 186
A PP P A S P++ G LR+G G L PQ P H+++ GA +
Sbjct: 43 ATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILA------PQPPPPQQHQERPGAAAI 96
Query: 187 LGRKGEVPGEAPPSS 201
+G+ G+ PP S
Sbjct: 97 GSARGQSTGKGPPQS 111
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 37.7 bits (86), Expect = 0.008
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 128 AVLICPPPTPLACSRLWVPISMEGR-LRKGCSGQLGASLQVPPQHEQPGCHKQKQGAKKL 186
A PP P A S P++ G LR+G G L PQ P H+++ GA +
Sbjct: 43 ATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILA------PQPPPPQQHQERPGAAAI 96
Query: 187 LGRKGEVPGEAPPSS 201
+G+ G+ PP S
Sbjct: 97 GSARGQSTGKGPPQS 111
>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
Length = 1075
Score = 37.7 bits (86), Expect = 0.008
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 128 AVLICPPPTPLACSRLWVPISMEGR-LRKGCSGQLGASLQVPPQHEQPGCHKQKQGAKKL 186
A PP P A S P++ G LR+G G L PQ P H+++ GA +
Sbjct: 43 ATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILA------PQPPPPQQHQERPGAAAI 96
Query: 187 LGRKGEVPGEAPPSS 201
+G+ G+ PP S
Sbjct: 97 GSARGQSTGKGPPQS 111
>gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]
Length = 1044
Score = 37.7 bits (86), Expect = 0.008
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 128 AVLICPPPTPLACSRLWVPISMEGR-LRKGCSGQLGASLQVPPQHEQPGCHKQKQGAKKL 186
A PP P A S P++ G LR+G G L PQ P H+++ GA +
Sbjct: 43 ATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILA------PQPPPPQQHQERPGAAAI 96
Query: 187 LGRKGEVPGEAPPSS 201
+G+ G+ PP S
Sbjct: 97 GSARGQSTGKGPPQS 111
>gi|156616271 kinesin family member 19 [Homo sapiens]
Length = 998
Score = 35.0 bits (79), Expect = 0.053
Identities = 26/84 (30%), Positives = 32/84 (38%)
Query: 121 LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK 180
L +H+L PP PLAC R P S G + H G
Sbjct: 810 LSLHSLSEGDDARPPGPLACKRPPSPTLQHAASEDNLSSSTGEAPSRAVGHHGDGPRPWL 869
Query: 181 QGAKKLLGRKGEVPGEAPPSSQRS 204
+G KK LG+K E EA +RS
Sbjct: 870 RGQKKSLGKKREESLEAKRRKRRS 893
>gi|92859678 small nuclear RNA activating complex, polypeptide 4,
190kDa [Homo sapiens]
Length = 1469
Score = 35.0 bits (79), Expect = 0.053
Identities = 51/212 (24%), Positives = 67/212 (31%), Gaps = 24/212 (11%)
Query: 12 PCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITVATLLWLQIQAS 71
P Q +G Q + +QAP S K G + P LP T L +Q +
Sbjct: 1001 PAASQAPALGPGQISVSCPESGLGQSQAPAASRKQGLPEAPPFLPAAPSPTPLPVQPLSL 1060
Query: 72 LHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTWLGVHTLEAVLI 131
H G P A P P W+L A + +SL G L A L+
Sbjct: 1061 THIGG------PHVATSVPLPVTWVLTAQGLLP-VPVPAVVSLPRPAGTPGPAGLLATLL 1113
Query: 132 CP---------PPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQKQG 182
P P P S P +M C A PP H + G
Sbjct: 1114 PPLTETRAAQGPRAPALSSSWQPPANMNREPEPSCRTDTPA----PPTHALSQSPAEADG 1169
Query: 183 AKKLLGRKGEVPGEAPPSSQRS----PEAWGP 210
+ + + +V E P S PEA P
Sbjct: 1170 SVAFVPGEAQVAREIPEPRTSSHADPPEAEPP 1201
>gi|222080107 solute carrier family 23 (nucleobase transporters),
member 3 isoform 3 [Homo sapiens]
Length = 618
Score = 34.7 bits (78), Expect = 0.070
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 90 PAPAAWLLPAVSTCSNLKARLGLSLGSAVTWLGVHTLEAVLI-CPPPTPLACSRLWVPIS 148
P P W P + T L A + ++L ++ + LG + L L+ PPP P ACSR +S
Sbjct: 310 PHPGEWNWPLL-TPRALAAGISMALAASTSSLGCYALCGRLLHLPPPPPHACSR---GLS 365
Query: 149 MEGRLRKGCSGQLGASL 165
+EG L +G LG+ +
Sbjct: 366 LEG-LGSVLAGLLGSPM 381
>gi|222080105 solute carrier family 23 (nucleobase transporters),
member 3 isoform 2 [Homo sapiens]
Length = 610
Score = 34.7 bits (78), Expect = 0.070
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 90 PAPAAWLLPAVSTCSNLKARLGLSLGSAVTWLGVHTLEAVLI-CPPPTPLACSRLWVPIS 148
P P W P + T L A + ++L ++ + LG + L L+ PPP P ACSR +S
Sbjct: 302 PHPGEWNWPLL-TPRALAAGISMALAASTSSLGCYALCGRLLHLPPPPPHACSR---GLS 357
Query: 149 MEGRLRKGCSGQLGASL 165
+EG L +G LG+ +
Sbjct: 358 LEG-LGSVLAGLLGSPM 373
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 33.5 bits (75), Expect = 0.16
Identities = 60/251 (23%), Positives = 86/251 (34%), Gaps = 53/251 (21%)
Query: 3 PVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCS--WKLGAGRSAPALPGITV 60
P G EP +D A +A A+ A + L + W+LG G+ P + V
Sbjct: 283 PTGERSSREPL---LDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAV 339
Query: 61 AT----------------------LLWLQIQASLHSQGSRKAPFPPRAQEA-PAPAAWLL 97
T LW + + S G+R P P RA+ PAP
Sbjct: 340 RTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRARPGKPAPRGSAP 399
Query: 98 PA----VSTCSNLKARLGLSLGSAVTW-LGVHTLEAVLICPPPTPLACSR---LWVPISM 149
PA S L +G GS VT +G H L P P+ R + P+S
Sbjct: 400 PARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLS- 458
Query: 150 EGRLRKGCSGQLGASLQVPPQHEQPGCHKQKQGAKKL----LGRKGEVPGEAPPSSQRSP 205
+ Q PP+ + GA +L R +PG A + +
Sbjct: 459 ------------SPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAH 506
Query: 206 EAWGPGCQSCG 216
+ G C+ CG
Sbjct: 507 DWGGQRCEGCG 517
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 33.5 bits (75), Expect = 0.16
Identities = 60/251 (23%), Positives = 86/251 (34%), Gaps = 53/251 (21%)
Query: 3 PVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCS--WKLGAGRSAPALPGITV 60
P G EP +D A +A A+ A + L + W+LG G+ P + V
Sbjct: 283 PTGERSSREPL---LDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAV 339
Query: 61 AT----------------------LLWLQIQASLHSQGSRKAPFPPRAQEA-PAPAAWLL 97
T LW + + S G+R P P RA+ PAP
Sbjct: 340 RTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRARPGKPAPRGSAP 399
Query: 98 PA----VSTCSNLKARLGLSLGSAVTW-LGVHTLEAVLICPPPTPLACSR---LWVPISM 149
PA S L +G GS VT +G H L P P+ R + P+S
Sbjct: 400 PARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLS- 458
Query: 150 EGRLRKGCSGQLGASLQVPPQHEQPGCHKQKQGAKKL----LGRKGEVPGEAPPSSQRSP 205
+ Q PP+ + GA +L R +PG A + +
Sbjct: 459 ------------SPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAH 506
Query: 206 EAWGPGCQSCG 216
+ G C+ CG
Sbjct: 507 DWGGQRCEGCG 517
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 32.3 bits (72), Expect = 0.35
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 11 EPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITVATLLWLQIQA 70
EP +DG+ QLP+ A + P A APA VA + + + A
Sbjct: 109 EPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLA 168
Query: 71 SLHSQGSRKAPFP-PRAQEAPAPAAWLLPA 99
+ AP P P A APAPA PA
Sbjct: 169 PAPAPAPAPAPAPAPVAAPAPAPAPAPAPA 198
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 32.3 bits (72), Expect = 0.35
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 11 EPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITVATLLWLQIQA 70
EP +DG+ QLP+ A + P A APA VA + + + A
Sbjct: 109 EPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLA 168
Query: 71 SLHSQGSRKAPFP-PRAQEAPAPAAWLLPA 99
+ AP P P A APAPA PA
Sbjct: 169 PAPAPAPAPAPAPAPVAAPAPAPAPAPAPA 198
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 32.3 bits (72), Expect = 0.35
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 11 EPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITVATLLWLQIQA 70
EP +DG+ QLP+ A + P A APA VA + + + A
Sbjct: 120 EPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLA 179
Query: 71 SLHSQGSRKAPFP-PRAQEAPAPAAWLLPA 99
+ AP P P A APAPA PA
Sbjct: 180 PAPAPAPAPAPAPAPVAAPAPAPAPAPAPA 209
>gi|8659574 transcription factor E3 [Homo sapiens]
Length = 575
Score = 31.6 bits (70), Expect = 0.59
Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 35/140 (25%)
Query: 24 QAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITVATLLWLQ--IQASLHSQGSRK-- 79
++ LP + QA T A L + G PA+ + + +L Q ++A Q R+
Sbjct: 75 RSSLPISLQATPATPATLSASSSAGGSRTPAMSSSSSSRVLLRQQLMRAQAQEQERRERR 134
Query: 80 -----APFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTWLGVHTLEAVLICPP 134
APFP +PAPA+ PA+S +G+S G HTL PP
Sbjct: 135 EQAAAAPFP-----SPAPAS---PAISV-------VGVSAGG-------HTLSR----PP 168
Query: 135 PTPLACSRLWVPISMEGRLR 154
P + L V +E R
Sbjct: 169 PAQVPREVLKVQTHLENPTR 188
>gi|109148522 insulin- insulin-like growth factor 2 [Homo sapiens]
Length = 200
Score = 31.6 bits (70), Expect = 0.59
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 47 GAGRSAPALP--GITVAT-LLWLQIQASLHSQGSRKAPFPPRAQEAPAP----AAWLLPA 99
GA +A L G V T L+W ++ +S QGS P P AQ AP P A P
Sbjct: 125 GAAGTAQGLEYRGRRVTTELVWEEVDSSPQPQGSESLPAQPPAQPAPQPEPQQAREPSPE 184
Query: 100 VSTC 103
VS C
Sbjct: 185 VSCC 188
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 31.2 bits (69), Expect = 0.77
Identities = 43/159 (27%), Positives = 59/159 (37%), Gaps = 26/159 (16%)
Query: 71 SLHSQGSRKAPFPPRAQEA-PAPAAWLLPA----VSTCSNLKARLGLSLGSAVTW-LGVH 124
S HS G+R P P RA+ PAP PA S L +G GS VT +G H
Sbjct: 274 SSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTH 333
Query: 125 TLEAVLICPPPTPLACSR---LWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQKQ 181
L P P+ R + P+S + Q PP+ +
Sbjct: 334 ALATRRGSRAPRPVGVLRGVPHFRPLS-------------SPAPQSPPRSPSVRAFGPRL 380
Query: 182 GAKKL----LGRKGEVPGEAPPSSQRSPEAWGPGCQSCG 216
GA +L R +PG A + + + G C+ CG
Sbjct: 381 GAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCG 419
>gi|50301236 forkhead box J1 [Homo sapiens]
Length = 421
Score = 31.2 bits (69), Expect = 0.77
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 78 RKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTWLG-----VHTLEAVLIC 132
RK P P R + P P + LLP L+ G A+ G + LEA+ +
Sbjct: 274 RKQPLPKRVAKVPRPPSTLLPTPEEQGELEPLKGNFDWEAIFDAGTLGGELGALEALELS 333
Query: 133 PPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQ 166
PP +P S + V +++ GR C G S++
Sbjct: 334 PPLSP--ASHVDVDLTIHGR-HIDCPATWGPSVE 364
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 30.4 bits (67), Expect = 1.3
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 5 GAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLC-SWKL--GAGRSAPALPGITVA 61
G G K P P G G Y + A++A + + SW GAG S+ + G+ A
Sbjct: 211 GPGQKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRA 270
Query: 62 TLLWLQIQASLHSQGSRKAPFPPRAQEAPAP 92
+QAS + GS ++P PP+ + P
Sbjct: 271 N----SVQASRPAPGSVQSPAPPQPGQPGTP 297
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 30.4 bits (67), Expect = 1.3
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 5 GAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLC-SWKL--GAGRSAPALPGITVA 61
G G K P P G G Y + A++A + + SW GAG S+ + G+ A
Sbjct: 207 GPGQKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRA 266
Query: 62 TLLWLQIQASLHSQGSRKAPFPPRAQEAPAP 92
+QAS + GS ++P PP+ + P
Sbjct: 267 N----SVQASRPAPGSVQSPAPPQPGQPGTP 293
>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
Length = 1476
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 163 ASLQVPPQHEQPGCHKQKQGAKKLLGRKGEVPGEAPPSSQRSPEAWG 209
+SLQ P P K A +LLG GE G P + PEAWG
Sbjct: 596 SSLQSPASVAPPQGPGTKIQAPQLLG--GETEGREAPQGELVPEAWG 640
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,994,667
Number of Sequences: 37866
Number of extensions: 652232
Number of successful extensions: 2857
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 2795
Number of HSP's gapped (non-prelim): 145
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.