Guide to the Human Genome
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Search of human proteins with 169194706

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169194706 PREDICTED: hypothetical protein [Homo sapiens]
         (229 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169194706 PREDICTED: hypothetical protein [Homo sapiens]           482   e-136
gi|169201915 PREDICTED: hypothetical protein [Homo sapiens]           482   e-136
gi|169191953 PREDICTED: hypothetical protein [Homo sapiens]           482   e-136
gi|169212153 PREDICTED: hypothetical protein [Homo sapiens]            46   2e-05
gi|169211716 PREDICTED: hypothetical protein [Homo sapiens]            46   2e-05
gi|169211169 PREDICTED: hypothetical protein [Homo sapiens]            46   2e-05
gi|239757723 PREDICTED: hypothetical protein [Homo sapiens]            45   4e-05
gi|239752210 PREDICTED: hypothetical protein [Homo sapiens]            45   4e-05
gi|239746733 PREDICTED: hypothetical protein [Homo sapiens]            45   5e-05
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]          38   0.008
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]          38   0.008
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]          38   0.008
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]          38   0.008
gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]          38   0.008
gi|156616271 kinesin family member 19 [Homo sapiens]                   35   0.053
gi|92859678 small nuclear RNA activating complex, polypeptide 4,...    35   0.053
gi|222080107 solute carrier family 23 (nucleobase transporters),...    35   0.070
gi|222080105 solute carrier family 23 (nucleobase transporters),...    35   0.070
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]            33   0.16 
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]            33   0.16 
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    32   0.35 
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    32   0.35 
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ...    32   0.35 
gi|8659574 transcription factor E3 [Homo sapiens]                      32   0.59 
gi|109148522 insulin- insulin-like growth factor 2 [Homo sapiens]      32   0.59 
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]            31   0.77 
gi|50301236 forkhead box J1 [Homo sapiens]                             31   0.77 
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]             30   1.3  
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]              30   1.3  
gi|88196790 coiled-coil domain containing 88 [Homo sapiens]            30   1.3  

>gi|169194706 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 229

 Score =  482 bits (1240), Expect = e-136
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 1   MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
           MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV
Sbjct: 1   MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60

Query: 61  ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW 120
           ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW
Sbjct: 61  ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW 120

Query: 121 LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK 180
           LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK
Sbjct: 121 LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK 180

Query: 181 QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP 229
           QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP
Sbjct: 181 QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP 229


>gi|169201915 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 229

 Score =  482 bits (1240), Expect = e-136
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 1   MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
           MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV
Sbjct: 1   MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60

Query: 61  ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW 120
           ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW
Sbjct: 61  ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW 120

Query: 121 LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK 180
           LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK
Sbjct: 121 LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK 180

Query: 181 QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP 229
           QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP
Sbjct: 181 QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP 229


>gi|169191953 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 229

 Score =  482 bits (1240), Expect = e-136
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 1   MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
           MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV
Sbjct: 1   MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60

Query: 61  ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW 120
           ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW
Sbjct: 61  ATLLWLQIQASLHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTW 120

Query: 121 LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK 180
           LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK
Sbjct: 121 LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK 180

Query: 181 QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP 229
           QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP
Sbjct: 181 QGAKKLLGRKGEVPGEAPPSSQRSPEAWGPGCQSCGLEWELVVLFWVCP 229


>gi|169212153 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 190

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 35/83 (42%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 1   MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
           MEPV AGDK EP PFQV   G  QAQL    +       P  S  LG+   A A P    
Sbjct: 112 MEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGL----RPRHSCALGSQEKAGAPPSQAQ 167

Query: 61  ATLL--WLQIQASLHSQGSRKAP 81
                  LQ QA LHS G  + P
Sbjct: 168 LEPFKPQLQTQAPLHSWGLGRPP 190


>gi|169211716 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 190

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 35/83 (42%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 1   MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
           MEPV AGDK EP PFQV   G  QAQL    +       P  S  LG+   A A P    
Sbjct: 112 MEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGL----RPRHSCALGSQEKAGAPPSQAQ 167

Query: 61  ATLL--WLQIQASLHSQGSRKAP 81
                  LQ QA LHS G  + P
Sbjct: 168 LEPFKPQLQTQAPLHSWGLGRPP 190


>gi|169211169 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 190

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 35/83 (42%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 1   MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
           MEPV AGDK EP PFQV   G  QAQL    +       P  S  LG+   A A P    
Sbjct: 112 MEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGL----RPRHSCALGSQEKAGAPPSQAQ 167

Query: 61  ATLL--WLQIQASLHSQGSRKAP 81
                  LQ QA LHS G  + P
Sbjct: 168 LEPFKPQLQTQAPLHSWGLGRPP 190


>gi|239757723 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 39/96 (40%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 1   MEPVGAGDKHEPCPFQVDGVGAYQA-QLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGIT 59
           ME   A DK E  PFQV    ++   QLP   +    TQA LCS        AP      
Sbjct: 29  MEKAKARDKRETRPFQVGVRASWMLLQLP---KPWLQTQASLCSQGPEGQVGAPPSQAQL 85

Query: 60  VATLLWLQIQASLHSQGSRKAPFPPRAQ----EAPA 91
                WLQ QASLHS G RKAP    +Q    E PA
Sbjct: 86  QLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGPA 121


>gi|239752210 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 39/96 (40%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 1   MEPVGAGDKHEPCPFQVDGVGAYQA-QLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGIT 59
           ME   A DK E  PFQV    ++   QLP   +    TQA LCS        AP      
Sbjct: 29  MEKAKARDKRETRPFQVGVRASWMLLQLP---KPWLQTQASLCSQGPEGQVGAPPSQAQL 85

Query: 60  VATLLWLQIQASLHSQGSRKAPFPPRAQ----EAPA 91
                WLQ QASLHS G RKAP    +Q    E PA
Sbjct: 86  QLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGPA 121


>gi|239746733 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 37/95 (38%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 1   MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
           ME   A DK E  PFQV    ++    P        TQA LCS        AP       
Sbjct: 29  MEKAKARDKRETRPFQVGVRASWMLLQPPKPWLQ--TQASLCSQGPEGQVGAPPSQAQLQ 86

Query: 61  ATLLWLQIQASLHSQGSRKAPFPPRAQ----EAPA 91
               WLQ QASLHS G RKAP    +Q    E PA
Sbjct: 87  LPKPWLQTQASLHSWGPRKAPLVAGSQGPQTEGPA 121


>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
          Length = 1062

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 128 AVLICPPPTPLACSRLWVPISMEGR-LRKGCSGQLGASLQVPPQHEQPGCHKQKQGAKKL 186
           A    PP  P A S    P++  G  LR+G  G L       PQ   P  H+++ GA  +
Sbjct: 43  ATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILA------PQPPPPQQHQERPGAAAI 96

Query: 187 LGRKGEVPGEAPPSS 201
              +G+  G+ PP S
Sbjct: 97  GSARGQSTGKGPPQS 111


>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
          Length = 1044

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 128 AVLICPPPTPLACSRLWVPISMEGR-LRKGCSGQLGASLQVPPQHEQPGCHKQKQGAKKL 186
           A    PP  P A S    P++  G  LR+G  G L       PQ   P  H+++ GA  +
Sbjct: 43  ATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILA------PQPPPPQQHQERPGAAAI 96

Query: 187 LGRKGEVPGEAPPSS 201
              +G+  G+ PP S
Sbjct: 97  GSARGQSTGKGPPQS 111


>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
          Length = 1097

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 128 AVLICPPPTPLACSRLWVPISMEGR-LRKGCSGQLGASLQVPPQHEQPGCHKQKQGAKKL 186
           A    PP  P A S    P++  G  LR+G  G L       PQ   P  H+++ GA  +
Sbjct: 43  ATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILA------PQPPPPQQHQERPGAAAI 96

Query: 187 LGRKGEVPGEAPPSS 201
              +G+  G+ PP S
Sbjct: 97  GSARGQSTGKGPPQS 111


>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
          Length = 1075

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 128 AVLICPPPTPLACSRLWVPISMEGR-LRKGCSGQLGASLQVPPQHEQPGCHKQKQGAKKL 186
           A    PP  P A S    P++  G  LR+G  G L       PQ   P  H+++ GA  +
Sbjct: 43  ATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILA------PQPPPPQQHQERPGAAAI 96

Query: 187 LGRKGEVPGEAPPSS 201
              +G+  G+ PP S
Sbjct: 97  GSARGQSTGKGPPQS 111


>gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]
          Length = 1044

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 128 AVLICPPPTPLACSRLWVPISMEGR-LRKGCSGQLGASLQVPPQHEQPGCHKQKQGAKKL 186
           A    PP  P A S    P++  G  LR+G  G L       PQ   P  H+++ GA  +
Sbjct: 43  ATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILA------PQPPPPQQHQERPGAAAI 96

Query: 187 LGRKGEVPGEAPPSS 201
              +G+  G+ PP S
Sbjct: 97  GSARGQSTGKGPPQS 111


>gi|156616271 kinesin family member 19 [Homo sapiens]
          Length = 998

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 26/84 (30%), Positives = 32/84 (38%)

Query: 121 LGVHTLEAVLICPPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQK 180
           L +H+L       PP PLAC R   P           S   G +      H   G     
Sbjct: 810 LSLHSLSEGDDARPPGPLACKRPPSPTLQHAASEDNLSSSTGEAPSRAVGHHGDGPRPWL 869

Query: 181 QGAKKLLGRKGEVPGEAPPSSQRS 204
           +G KK LG+K E   EA    +RS
Sbjct: 870 RGQKKSLGKKREESLEAKRRKRRS 893


>gi|92859678 small nuclear RNA activating complex, polypeptide 4,
            190kDa [Homo sapiens]
          Length = 1469

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 51/212 (24%), Positives = 67/212 (31%), Gaps = 24/212 (11%)

Query: 12   PCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITVATLLWLQIQAS 71
            P   Q   +G  Q  +         +QAP  S K G   + P LP     T L +Q  + 
Sbjct: 1001 PAASQAPALGPGQISVSCPESGLGQSQAPAASRKQGLPEAPPFLPAAPSPTPLPVQPLSL 1060

Query: 72   LHSQGSRKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTWLGVHTLEAVLI 131
             H  G      P  A   P P  W+L A      +     +SL       G   L A L+
Sbjct: 1061 THIGG------PHVATSVPLPVTWVLTAQGLLP-VPVPAVVSLPRPAGTPGPAGLLATLL 1113

Query: 132  CP---------PPTPLACSRLWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQKQG 182
             P         P  P   S    P +M       C     A    PP H       +  G
Sbjct: 1114 PPLTETRAAQGPRAPALSSSWQPPANMNREPEPSCRTDTPA----PPTHALSQSPAEADG 1169

Query: 183  AKKLLGRKGEVPGEAPPSSQRS----PEAWGP 210
            +   +  + +V  E P     S    PEA  P
Sbjct: 1170 SVAFVPGEAQVAREIPEPRTSSHADPPEAEPP 1201


>gi|222080107 solute carrier family 23 (nucleobase transporters),
           member 3 isoform 3 [Homo sapiens]
          Length = 618

 Score = 34.7 bits (78), Expect = 0.070
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 90  PAPAAWLLPAVSTCSNLKARLGLSLGSAVTWLGVHTLEAVLI-CPPPTPLACSRLWVPIS 148
           P P  W  P + T   L A + ++L ++ + LG + L   L+  PPP P ACSR    +S
Sbjct: 310 PHPGEWNWPLL-TPRALAAGISMALAASTSSLGCYALCGRLLHLPPPPPHACSR---GLS 365

Query: 149 MEGRLRKGCSGQLGASL 165
           +EG L    +G LG+ +
Sbjct: 366 LEG-LGSVLAGLLGSPM 381


>gi|222080105 solute carrier family 23 (nucleobase transporters),
           member 3 isoform 2 [Homo sapiens]
          Length = 610

 Score = 34.7 bits (78), Expect = 0.070
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 90  PAPAAWLLPAVSTCSNLKARLGLSLGSAVTWLGVHTLEAVLI-CPPPTPLACSRLWVPIS 148
           P P  W  P + T   L A + ++L ++ + LG + L   L+  PPP P ACSR    +S
Sbjct: 302 PHPGEWNWPLL-TPRALAAGISMALAASTSSLGCYALCGRLLHLPPPPPHACSR---GLS 357

Query: 149 MEGRLRKGCSGQLGASL 165
           +EG L    +G LG+ +
Sbjct: 358 LEG-LGSVLAGLLGSPM 373


>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 60/251 (23%), Positives = 86/251 (34%), Gaps = 53/251 (21%)

Query: 3   PVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCS--WKLGAGRSAPALPGITV 60
           P G     EP    +D   A +A     A+ A  +   L +  W+LG G+  P +    V
Sbjct: 283 PTGERSSREPL---LDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAV 339

Query: 61  AT----------------------LLWLQIQASLHSQGSRKAPFPPRAQEA-PAPAAWLL 97
            T                       LW + +    S G+R  P P RA+   PAP     
Sbjct: 340 RTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRARPGKPAPRGSAP 399

Query: 98  PA----VSTCSNLKARLGLSLGSAVTW-LGVHTLEAVLICPPPTPLACSR---LWVPISM 149
           PA        S L   +G   GS VT  +G H L        P P+   R    + P+S 
Sbjct: 400 PARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLS- 458

Query: 150 EGRLRKGCSGQLGASLQVPPQHEQPGCHKQKQGAKKL----LGRKGEVPGEAPPSSQRSP 205
                         + Q PP+         + GA +L      R   +PG A  +   + 
Sbjct: 459 ------------SPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAH 506

Query: 206 EAWGPGCQSCG 216
           +  G  C+ CG
Sbjct: 507 DWGGQRCEGCG 517


>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 60/251 (23%), Positives = 86/251 (34%), Gaps = 53/251 (21%)

Query: 3   PVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCS--WKLGAGRSAPALPGITV 60
           P G     EP    +D   A +A     A+ A  +   L +  W+LG G+  P +    V
Sbjct: 283 PTGERSSREPL---LDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAV 339

Query: 61  AT----------------------LLWLQIQASLHSQGSRKAPFPPRAQEA-PAPAAWLL 97
            T                       LW + +    S G+R  P P RA+   PAP     
Sbjct: 340 RTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRARPGKPAPRGSAP 399

Query: 98  PA----VSTCSNLKARLGLSLGSAVTW-LGVHTLEAVLICPPPTPLACSR---LWVPISM 149
           PA        S L   +G   GS VT  +G H L        P P+   R    + P+S 
Sbjct: 400 PARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLS- 458

Query: 150 EGRLRKGCSGQLGASLQVPPQHEQPGCHKQKQGAKKL----LGRKGEVPGEAPPSSQRSP 205
                         + Q PP+         + GA +L      R   +PG A  +   + 
Sbjct: 459 ------------SPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAH 506

Query: 206 EAWGPGCQSCG 216
           +  G  C+ CG
Sbjct: 507 DWGGQRCEGCG 517


>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 11  EPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITVATLLWLQIQA 70
           EP    +DG+     QLP+    A  +  P       A   APA     VA  + + + A
Sbjct: 109 EPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLA 168

Query: 71  SLHSQGSRKAPFP-PRAQEAPAPAAWLLPA 99
              +     AP P P A  APAPA    PA
Sbjct: 169 PAPAPAPAPAPAPAPVAAPAPAPAPAPAPA 198


>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 11  EPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITVATLLWLQIQA 70
           EP    +DG+     QLP+    A  +  P       A   APA     VA  + + + A
Sbjct: 109 EPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLA 168

Query: 71  SLHSQGSRKAPFP-PRAQEAPAPAAWLLPA 99
              +     AP P P A  APAPA    PA
Sbjct: 169 PAPAPAPAPAPAPAPVAAPAPAPAPAPAPA 198


>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
           sapiens]
          Length = 316

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 11  EPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITVATLLWLQIQA 70
           EP    +DG+     QLP+    A  +  P       A   APA     VA  + + + A
Sbjct: 120 EPAAESLDGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLA 179

Query: 71  SLHSQGSRKAPFP-PRAQEAPAPAAWLLPA 99
              +     AP P P A  APAPA    PA
Sbjct: 180 PAPAPAPAPAPAPAPVAAPAPAPAPAPAPA 209


>gi|8659574 transcription factor E3 [Homo sapiens]
          Length = 575

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 35/140 (25%)

Query: 24  QAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITVATLLWLQ--IQASLHSQGSRK-- 79
           ++ LP + QA   T A L +     G   PA+   + + +L  Q  ++A    Q  R+  
Sbjct: 75  RSSLPISLQATPATPATLSASSSAGGSRTPAMSSSSSSRVLLRQQLMRAQAQEQERRERR 134

Query: 80  -----APFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTWLGVHTLEAVLICPP 134
                APFP     +PAPA+   PA+S        +G+S G        HTL      PP
Sbjct: 135 EQAAAAPFP-----SPAPAS---PAISV-------VGVSAGG-------HTLSR----PP 168

Query: 135 PTPLACSRLWVPISMEGRLR 154
           P  +    L V   +E   R
Sbjct: 169 PAQVPREVLKVQTHLENPTR 188


>gi|109148522 insulin- insulin-like growth factor 2 [Homo sapiens]
          Length = 200

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 47  GAGRSAPALP--GITVAT-LLWLQIQASLHSQGSRKAPFPPRAQEAPAP----AAWLLPA 99
           GA  +A  L   G  V T L+W ++ +S   QGS   P  P AQ AP P    A    P 
Sbjct: 125 GAAGTAQGLEYRGRRVTTELVWEEVDSSPQPQGSESLPAQPPAQPAPQPEPQQAREPSPE 184

Query: 100 VSTC 103
           VS C
Sbjct: 185 VSCC 188


>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 466

 Score = 31.2 bits (69), Expect = 0.77
 Identities = 43/159 (27%), Positives = 59/159 (37%), Gaps = 26/159 (16%)

Query: 71  SLHSQGSRKAPFPPRAQEA-PAPAAWLLPA----VSTCSNLKARLGLSLGSAVTW-LGVH 124
           S HS G+R  P P RA+   PAP     PA        S L   +G   GS VT  +G H
Sbjct: 274 SSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTH 333

Query: 125 TLEAVLICPPPTPLACSR---LWVPISMEGRLRKGCSGQLGASLQVPPQHEQPGCHKQKQ 181
            L        P P+   R    + P+S               + Q PP+         + 
Sbjct: 334 ALATRRGSRAPRPVGVLRGVPHFRPLS-------------SPAPQSPPRSPSVRAFGPRL 380

Query: 182 GAKKL----LGRKGEVPGEAPPSSQRSPEAWGPGCQSCG 216
           GA +L      R   +PG A  +   + +  G  C+ CG
Sbjct: 381 GAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCG 419


>gi|50301236 forkhead box J1 [Homo sapiens]
          Length = 421

 Score = 31.2 bits (69), Expect = 0.77
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 78  RKAPFPPRAQEAPAPAAWLLPAVSTCSNLKARLGLSLGSAVTWLG-----VHTLEAVLIC 132
           RK P P R  + P P + LLP       L+   G     A+   G     +  LEA+ + 
Sbjct: 274 RKQPLPKRVAKVPRPPSTLLPTPEEQGELEPLKGNFDWEAIFDAGTLGGELGALEALELS 333

Query: 133 PPPTPLACSRLWVPISMEGRLRKGCSGQLGASLQ 166
           PP +P   S + V +++ GR    C    G S++
Sbjct: 334 PPLSP--ASHVDVDLTIHGR-HIDCPATWGPSVE 364


>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
          Length = 694

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 5   GAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLC-SWKL--GAGRSAPALPGITVA 61
           G G K  P P    G G Y   +  A++A   + +    SW    GAG S+ +  G+  A
Sbjct: 211 GPGQKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRA 270

Query: 62  TLLWLQIQASLHSQGSRKAPFPPRAQEAPAP 92
                 +QAS  + GS ++P PP+  +   P
Sbjct: 271 N----SVQASRPAPGSVQSPAPPQPGQPGTP 297


>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
          Length = 690

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 5   GAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLC-SWKL--GAGRSAPALPGITVA 61
           G G K  P P    G G Y   +  A++A   + +    SW    GAG S+ +  G+  A
Sbjct: 207 GPGQKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRA 266

Query: 62  TLLWLQIQASLHSQGSRKAPFPPRAQEAPAP 92
                 +QAS  + GS ++P PP+  +   P
Sbjct: 267 N----SVQASRPAPGSVQSPAPPQPGQPGTP 293


>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
          Length = 1476

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 163 ASLQVPPQHEQPGCHKQKQGAKKLLGRKGEVPGEAPPSSQRSPEAWG 209
           +SLQ P     P     K  A +LLG  GE  G   P  +  PEAWG
Sbjct: 596 SSLQSPASVAPPQGPGTKIQAPQLLG--GETEGREAPQGELVPEAWG 640


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.134    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,994,667
Number of Sequences: 37866
Number of extensions: 652232
Number of successful extensions: 2857
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 2795
Number of HSP's gapped (non-prelim): 145
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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