Guide to the Human Genome
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Name: LOC728683 Sequence: fasta or formatted (239aa) NCBI GI: 169184233
Description:

PREDICTED: similar to hCG2039164

Referenced in:

G-Protein-coupled Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         10           1
 C cysteine            3.3          8           1
 D aspartate           1.7          4           1
 E glutamate           6.7         16           4
 F phenylalanine       5.9         14           1
 G glycine            12.1         29           2
 H histidine           2.1          5           1
 I isoleucine          5.0         12           1
 K lysine              3.3          8           1
 L leucine            10.9         26           2
 M methionine          2.1          5           1
 N asparagine          4.2         10           2
 P proline             6.3         15           1
 Q glutamine           4.2         10           1
 R arginine            4.2         10           2
 S serine              7.5         18           1
 T threonine           5.0         12           2
 V valine              8.4         20           2
 W tryptophan          2.1          5           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2039164 
LOC728297             0.985   PREDICTED: similar to hCG2039164 
LOC728297             0.928   PREDICTED: similar to hCG2039164 
LOC728297             0.921   PREDICTED: similar to hCG2039164 
PTGER4                0.127   prostaglandin E receptor 4, subtype EP4 
GPR183                0.036   EBV-induced G protein-coupled receptor 2 
KISS1R                0.023   G protein-coupled receptor 54 
PTGER2                0.021   prostaglandin E receptor 2 (subtype EP2), 53kDa [Hom...
HTR4                  0.017   serotonin 5-HT4 receptor isoform n 
HTR4                  0.017   serotonin 5-HT4 receptor isoform i 
HTR4                  0.017   serotonin 5-HT4 receptor isoform hb 
HTR4                  0.017   serotonin 5-HT4 receptor isoform d 
HTR4                  0.017   serotonin 5-HT4 receptor isoform a 
HTR4                  0.017   serotonin 5-HT4 receptor isoform g 
HTR4                  0.017   serotonin 5-HT4 receptor isoform b 
CCR5                  0.015   chemokine (C-C motif) receptor 5 
CCR5                  0.015   chemokine (C-C motif) receptor 5 
UTS2R                 0.015   urotensin 2 receptor 
CCR2                  0.013   chemokine (C-C motif) receptor 2 isoform B 
CCR2                  0.013   chemokine (C-C motif) receptor 2 isoform A 
CCR4                  0.013   chemokine (C-C motif) receptor 4 
PTGIR                 0.013   prostaglandin I2 (prostacyclin) receptor (IP) 
CX3CR1                0.013   chemokine (C-X3-C motif) receptor 1 
CCR1                  0.011   chemokine (C-C motif) receptor 1 
GPR19                 0.011   G protein-coupled receptor 19 
LOC100129890          0.011   PREDICTED: hypothetical protein 
LOC100129890          0.011   PREDICTED: hypothetical protein 
UNC13A                0.011   unc-13 homolog A 
CTNNA2                0.008   catenin, alpha 2 
ADRA1A                0.008   alpha-1A-adrenergic receptor isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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