Guide to the Human Genome
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Name: LOC728297 Sequence: fasta or formatted (239aa) NCBI GI: 113420725
Description:

PREDICTED: similar to hCG2039164

Referenced in:

G-Protein-coupled Receptors

Other entries for this name:
alt prot [239aa] PREDICTED: similar to hCG2039164
alt prot [239aa] PREDICTED: similar to hCG2039164
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         11           2
 C cysteine            3.3          8           1
 D aspartate           1.7          4           1
 E glutamate           6.7         16           4
 F phenylalanine       5.9         14           1
 G glycine            11.7         28           2
 H histidine           2.1          5           1
 I isoleucine          5.0         12           1
 K lysine              3.3          8           1
 L leucine            10.9         26           2
 M methionine          2.1          5           1
 N asparagine          4.6         11           2
 P proline             6.3         15           1
 Q glutamine           4.2         10           1
 R arginine            4.6         11           2
 S serine              7.5         18           1
 T threonine           4.6         11           2
 V valine              7.9         19           2
 W tryptophan          2.1          5           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2039164 
LOC728683             0.985   PREDICTED: similar to hCG2039164 
LOC728297             0.921   PREDICTED: similar to hCG2039164 
LOC728297             0.915   PREDICTED: similar to hCG2039164 
PTGER4                0.130   prostaglandin E receptor 4, subtype EP4 
GPR183                0.032   EBV-induced G protein-coupled receptor 2 
KISS1R                0.028   G protein-coupled receptor 54 
HTR4                  0.021   serotonin 5-HT4 receptor isoform n 
HTR4                  0.021   serotonin 5-HT4 receptor isoform i 
HTR4                  0.021   serotonin 5-HT4 receptor isoform hb 
HTR4                  0.021   serotonin 5-HT4 receptor isoform d 
HTR4                  0.021   serotonin 5-HT4 receptor isoform a 
HTR4                  0.021   serotonin 5-HT4 receptor isoform g 
HTR4                  0.021   serotonin 5-HT4 receptor isoform b 
CCR5                  0.019   chemokine (C-C motif) receptor 5 
CCR5                  0.019   chemokine (C-C motif) receptor 5 
PTGER2                0.019   prostaglandin E receptor 2 (subtype EP2), 53kDa [Hom...
UTS2R                 0.017   urotensin 2 receptor 
CCR2                  0.017   chemokine (C-C motif) receptor 2 isoform B 
CCR2                  0.017   chemokine (C-C motif) receptor 2 isoform A 
CCR4                  0.017   chemokine (C-C motif) receptor 4 
PTGIR                 0.017   prostaglandin I2 (prostacyclin) receptor (IP) 
CX3CR1                0.015   chemokine (C-X3-C motif) receptor 1 
CCR1                  0.015   chemokine (C-C motif) receptor 1 
GPR19                 0.015   G protein-coupled receptor 19 
ADRA1A                0.011   alpha-1A-adrenergic receptor isoform 4 
ADRA1A                0.011   alpha-1A-adrenergic receptor isoform 1 
ADRA1A                0.011   alpha-1A-adrenergic receptor isoform 2 
ADRA1A                0.011   alpha-1A-adrenergic receptor isoform 3 
NPY2R                 0.011   neuropeptide Y receptor Y2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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