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Search of human proteins with 169173226
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169173226 PREDICTED: hypothetical protein [Homo sapiens]
(227 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169173226 PREDICTED: hypothetical protein [Homo sapiens] 471 e-133
gi|169172450 PREDICTED: hypothetical protein [Homo sapiens] 471 e-133
gi|169172722 PREDICTED: hypothetical protein [Homo sapiens] 471 e-133
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 31 0.99
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 31 0.99
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 31 0.99
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 31 0.99
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 31 0.99
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 31 0.99
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 31 0.99
gi|157694489 immunoglobulin superfamily, member 2 [Homo sapiens] 30 2.2
gi|239755210 PREDICTED: hypothetical protein [Homo sapiens] 29 2.9
gi|239749699 PREDICTED: hypothetical protein XP_002347122 [Homo ... 29 2.9
gi|239743965 PREDICTED: hypothetical protein XP_002344250 [Homo ... 29 2.9
gi|226371777 sex hormone-binding globulin isoform 3 precursor [H... 29 3.8
gi|226371775 sex hormone-binding globulin isoform 2 precursor [H... 29 3.8
gi|7382460 sex hormone-binding globulin isoform 1 precursor [Hom... 29 3.8
gi|226371613 sex hormone-binding globulin isoform 4 precursor [H... 29 3.8
gi|13259508 dynactin 1 isoform 2 [Homo sapiens] 29 3.8
gi|13259510 dynactin 1 isoform 1 [Homo sapiens] 29 3.8
gi|205277396 dynactin 1 isoform 4 [Homo sapiens] 28 4.9
gi|205277392 dynactin 1 isoform 3 [Homo sapiens] 28 4.9
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] 28 4.9
gi|239755710 PREDICTED: hypothetical protein [Homo sapiens] 28 4.9
gi|71999153 hypothetical protein LOC23334 [Homo sapiens] 28 4.9
gi|168229226 hypothetical protein LOC401399 [Homo sapiens] 28 4.9
gi|239752162 PREDICTED: similar to hCG40360 [Homo sapiens] 28 8.4
gi|146229340 mutated in colorectal cancers isoform 1 [Homo sapiens] 28 8.4
gi|44771201 integrator complex subunit 5 [Homo sapiens] 28 8.4
>gi|169173226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 227
Score = 471 bits (1212), Expect = e-133
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MGCSGRYSWEERPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGE 60
MGCSGRYSWEERPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGE
Sbjct: 1 MGCSGRYSWEERPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGE 60
Query: 61 APKSLLQLLLLHLTSLLHARLGLFLLLEQAPDSGHSPQMLHLRSSRLVESSRHMLWGGRA 120
APKSLLQLLLLHLTSLLHARLGLFLLLEQAPDSGHSPQMLHLRSSRLVESSRHMLWGGRA
Sbjct: 61 APKSLLQLLLLHLTSLLHARLGLFLLLEQAPDSGHSPQMLHLRSSRLVESSRHMLWGGRA 120
Query: 121 ELPRAPGHDLGAWSPEGAGEDLLFTLEDAHLQRYGFRGGTNPGRCYQRKMVNCGVSHLRV 180
ELPRAPGHDLGAWSPEGAGEDLLFTLEDAHLQRYGFRGGTNPGRCYQRKMVNCGVSHLRV
Sbjct: 121 ELPRAPGHDLGAWSPEGAGEDLLFTLEDAHLQRYGFRGGTNPGRCYQRKMVNCGVSHLRV 180
Query: 181 QGYQLAEAHPMAWKLPATSHRFHPLASLQEADVIVNFVFVTPYVHVS 227
QGYQLAEAHPMAWKLPATSHRFHPLASLQEADVIVNFVFVTPYVHVS
Sbjct: 181 QGYQLAEAHPMAWKLPATSHRFHPLASLQEADVIVNFVFVTPYVHVS 227
>gi|169172450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 227
Score = 471 bits (1212), Expect = e-133
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MGCSGRYSWEERPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGE 60
MGCSGRYSWEERPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGE
Sbjct: 1 MGCSGRYSWEERPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGE 60
Query: 61 APKSLLQLLLLHLTSLLHARLGLFLLLEQAPDSGHSPQMLHLRSSRLVESSRHMLWGGRA 120
APKSLLQLLLLHLTSLLHARLGLFLLLEQAPDSGHSPQMLHLRSSRLVESSRHMLWGGRA
Sbjct: 61 APKSLLQLLLLHLTSLLHARLGLFLLLEQAPDSGHSPQMLHLRSSRLVESSRHMLWGGRA 120
Query: 121 ELPRAPGHDLGAWSPEGAGEDLLFTLEDAHLQRYGFRGGTNPGRCYQRKMVNCGVSHLRV 180
ELPRAPGHDLGAWSPEGAGEDLLFTLEDAHLQRYGFRGGTNPGRCYQRKMVNCGVSHLRV
Sbjct: 121 ELPRAPGHDLGAWSPEGAGEDLLFTLEDAHLQRYGFRGGTNPGRCYQRKMVNCGVSHLRV 180
Query: 181 QGYQLAEAHPMAWKLPATSHRFHPLASLQEADVIVNFVFVTPYVHVS 227
QGYQLAEAHPMAWKLPATSHRFHPLASLQEADVIVNFVFVTPYVHVS
Sbjct: 181 QGYQLAEAHPMAWKLPATSHRFHPLASLQEADVIVNFVFVTPYVHVS 227
>gi|169172722 PREDICTED: hypothetical protein [Homo sapiens]
Length = 227
Score = 471 bits (1212), Expect = e-133
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MGCSGRYSWEERPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGE 60
MGCSGRYSWEERPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGE
Sbjct: 1 MGCSGRYSWEERPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGE 60
Query: 61 APKSLLQLLLLHLTSLLHARLGLFLLLEQAPDSGHSPQMLHLRSSRLVESSRHMLWGGRA 120
APKSLLQLLLLHLTSLLHARLGLFLLLEQAPDSGHSPQMLHLRSSRLVESSRHMLWGGRA
Sbjct: 61 APKSLLQLLLLHLTSLLHARLGLFLLLEQAPDSGHSPQMLHLRSSRLVESSRHMLWGGRA 120
Query: 121 ELPRAPGHDLGAWSPEGAGEDLLFTLEDAHLQRYGFRGGTNPGRCYQRKMVNCGVSHLRV 180
ELPRAPGHDLGAWSPEGAGEDLLFTLEDAHLQRYGFRGGTNPGRCYQRKMVNCGVSHLRV
Sbjct: 121 ELPRAPGHDLGAWSPEGAGEDLLFTLEDAHLQRYGFRGGTNPGRCYQRKMVNCGVSHLRV 180
Query: 181 QGYQLAEAHPMAWKLPATSHRFHPLASLQEADVIVNFVFVTPYVHVS 227
QGYQLAEAHPMAWKLPATSHRFHPLASLQEADVIVNFVFVTPYVHVS
Sbjct: 181 QGYQLAEAHPMAWKLPATSHRFHPLASLQEADVIVNFVFVTPYVHVS 227
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 30.8 bits (68), Expect = 0.99
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 12 RPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGEAP 62
+P H+ + VQG + G+ Q LP G PG PGPG P
Sbjct: 194 QPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGP 244
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 30.8 bits (68), Expect = 0.99
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 12 RPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGEAP 62
+P H+ + VQG + G+ Q LP G PG PGPG P
Sbjct: 194 QPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGP 244
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 30.8 bits (68), Expect = 0.99
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 12 RPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGEAP 62
+P H+ + VQG + G+ Q LP G PG PGPG P
Sbjct: 194 QPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGP 244
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 30.8 bits (68), Expect = 0.99
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 12 RPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGEAP 62
+P H+ + VQG + G+ Q LP G PG PGPG P
Sbjct: 194 QPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGP 244
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 30.8 bits (68), Expect = 0.99
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 12 RPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGEAP 62
+P H+ + VQG + G+ Q LP G PG PGPG P
Sbjct: 194 QPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGP 244
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 30.8 bits (68), Expect = 0.99
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 12 RPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGEAP 62
+P H+ + VQG + G+ Q LP G PG PGPG P
Sbjct: 194 QPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGP 244
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 30.8 bits (68), Expect = 0.99
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 12 RPFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGEAP 62
+P H+ + VQG + G+ Q LP G PG PGPG P
Sbjct: 194 QPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGP 244
>gi|157694489 immunoglobulin superfamily, member 2 [Homo sapiens]
Length = 1021
Score = 29.6 bits (65), Expect = 2.2
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 133 WSPEGAGEDLLFTLEDAHLQRYGFRGGTNPGRCY------------QRKMVNCGVSHLRV 180
W+ E +G LL L+ L YG G CY Q +M + G+ RV
Sbjct: 852 WNRENSGSKLLVHLQHDGLLEYGEEGLRRHLHCYRSSSTDFVLKLHQVEMEDAGMYWCRV 911
Query: 181 QGYQLAEAHPMAW 193
+QL HP W
Sbjct: 912 AEWQL-HGHPSKW 923
>gi|239755210 PREDICTED: hypothetical protein [Homo sapiens]
Length = 241
Score = 29.3 bits (64), Expect = 2.9
Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 16/98 (16%)
Query: 20 ILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLP------GPGEAPKSLLQLLLLHL 73
+L QG + L Q LP L + L +G P +LP G G A K+ L LHL
Sbjct: 19 VLAQGEDGVGLLLVVPQRLPPVLLQYLDVGAAPVQLPLLKGAKGNGLAGKAPTALPGLHL 78
Query: 74 ----------TSLLHARLGLFLLLEQAPDSGHSPQMLH 101
LLH L LLL Q P + +LH
Sbjct: 79 PCLRPHLDGGLQLLHPGLEQGLLLLQLPQQLLAGPLLH 116
>gi|239749699 PREDICTED: hypothetical protein XP_002347122 [Homo
sapiens]
Length = 241
Score = 29.3 bits (64), Expect = 2.9
Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 16/98 (16%)
Query: 20 ILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLP------GPGEAPKSLLQLLLLHL 73
+L QG + L Q LP L + L +G P +LP G G A K+ L LHL
Sbjct: 19 VLAQGEDGVGLLLVVPQRLPPVLLQYLDVGAAPVQLPLLKGAKGNGLAGKAPTALPGLHL 78
Query: 74 ----------TSLLHARLGLFLLLEQAPDSGHSPQMLH 101
LLH L LLL Q P + +LH
Sbjct: 79 PCLRPHLDGGLQLLHPGLEQGLLLLQLPQQLLAGPLLH 116
>gi|239743965 PREDICTED: hypothetical protein XP_002344250 [Homo
sapiens]
Length = 241
Score = 29.3 bits (64), Expect = 2.9
Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 16/98 (16%)
Query: 20 ILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLP------GPGEAPKSLLQLLLLHL 73
+L QG + L Q LP L + L +G P +LP G G A K+ L LHL
Sbjct: 19 VLAQGEDGVGLLLVVPQRLPPVLLQYLDVGAAPVQLPLLKGAKGNGLAGKAPTALPGLHL 78
Query: 74 ----------TSLLHARLGLFLLLEQAPDSGHSPQMLH 101
LLH L LLL Q P + +LH
Sbjct: 79 PCLRPHLDGGLQLLHPGLEQGLLLLQLPQQLLAGPLLH 116
>gi|226371777 sex hormone-binding globulin isoform 3 precursor [Homo
sapiens]
Length = 293
Score = 28.9 bits (63), Expect = 3.8
Identities = 21/70 (30%), Positives = 27/70 (38%)
Query: 68 LLLLHLTSLLHARLGLFLLLEQAPDSGHSPQMLHLRSSRLVESSRHMLWGGRAELPRAPG 127
LLLL L L H R G L S H P +HL + E M + +
Sbjct: 13 LLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMTFDLTKITKTSSS 72
Query: 128 HDLGAWSPEG 137
++ W PEG
Sbjct: 73 FEVRTWDPEG 82
>gi|226371775 sex hormone-binding globulin isoform 2 precursor [Homo
sapiens]
Length = 384
Score = 28.9 bits (63), Expect = 3.8
Identities = 21/70 (30%), Positives = 27/70 (38%)
Query: 68 LLLLHLTSLLHARLGLFLLLEQAPDSGHSPQMLHLRSSRLVESSRHMLWGGRAELPRAPG 127
LLLL L L H R G L S H P +HL + E M + +
Sbjct: 13 LLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMTFDLTKITKTSSS 72
Query: 128 HDLGAWSPEG 137
++ W PEG
Sbjct: 73 FEVRTWDPEG 82
>gi|7382460 sex hormone-binding globulin isoform 1 precursor [Homo
sapiens]
Length = 402
Score = 28.9 bits (63), Expect = 3.8
Identities = 21/70 (30%), Positives = 27/70 (38%)
Query: 68 LLLLHLTSLLHARLGLFLLLEQAPDSGHSPQMLHLRSSRLVESSRHMLWGGRAELPRAPG 127
LLLL L L H R G L S H P +HL + E M + +
Sbjct: 13 LLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMTFDLTKITKTSSS 72
Query: 128 HDLGAWSPEG 137
++ W PEG
Sbjct: 73 FEVRTWDPEG 82
>gi|226371613 sex hormone-binding globulin isoform 4 precursor [Homo
sapiens]
Length = 287
Score = 28.9 bits (63), Expect = 3.8
Identities = 21/70 (30%), Positives = 27/70 (38%)
Query: 68 LLLLHLTSLLHARLGLFLLLEQAPDSGHSPQMLHLRSSRLVESSRHMLWGGRAELPRAPG 127
LLLL L L H R G L S H P +HL + E M + +
Sbjct: 13 LLLLLLLLLRHTRQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMTFDLTKITKTSSS 72
Query: 128 HDLGAWSPEG 137
++ W PEG
Sbjct: 73 FEVRTWDPEG 82
>gi|13259508 dynactin 1 isoform 2 [Homo sapiens]
Length = 1144
Score = 28.9 bits (63), Expect = 3.8
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 18 ITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPG---EAPKSLLQL--LLLH 72
I LV G +AG Q +P GQ PG +PGPG ++P L Q+ + LH
Sbjct: 922 IATLVSG---IAGEEQQRGAIP---------GQAPGSVPGPGLVKDSPLLLQQISAMRLH 969
Query: 73 LTSLLH 78
++ L H
Sbjct: 970 ISQLQH 975
>gi|13259510 dynactin 1 isoform 1 [Homo sapiens]
Length = 1278
Score = 28.9 bits (63), Expect = 3.8
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 18 ITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPG---EAPKSLLQL--LLLH 72
I LV G +AG Q +P GQ PG +PGPG ++P L Q+ + LH
Sbjct: 1056 IATLVSG---IAGEEQQRGAIP---------GQAPGSVPGPGLVKDSPLLLQQISAMRLH 1103
Query: 73 LTSLLH 78
++ L H
Sbjct: 1104 ISQLQH 1109
>gi|205277396 dynactin 1 isoform 4 [Homo sapiens]
Length = 1139
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 49 GQLPGRLPGPG---EAPKSLLQL--LLLHLTSLLH 78
GQ PG +PGPG ++P L Q+ + LH++ L H
Sbjct: 936 GQAPGSVPGPGLVKDSPLLLQQISAMRLHISQLQH 970
>gi|205277392 dynactin 1 isoform 3 [Homo sapiens]
Length = 1253
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 49 GQLPGRLPGPG---EAPKSLLQL--LLLHLTSLLH 78
GQ PG +PGPG ++P L Q+ + LH++ L H
Sbjct: 1050 GQAPGSVPGPGLVKDSPLLLQQISAMRLHISQLQH 1084
>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 445
Score = 28.5 bits (62), Expect = 4.9
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 26 PALAGLHAQDQVL--PHKLTEPLLIGQLPGRLPGPGEAPKSLLQ 67
P+L AQ Q + P L L +G GR P PG P LQ
Sbjct: 368 PSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAPALQ 411
>gi|239755710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 28.5 bits (62), Expect = 4.9
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 26 PALAGLHAQDQVL--PHKLTEPLLIGQLPGRLPGPGEAPKSLLQ 67
P+L AQ Q + P L L +G GR P PG P LQ
Sbjct: 325 PSLPSPQAQGQAVRQPRLLRAALALGAPRGRTPSPGPGPAPALQ 368
>gi|71999153 hypothetical protein LOC23334 [Homo sapiens]
Length = 2533
Score = 28.5 bits (62), Expect = 4.9
Identities = 41/138 (29%), Positives = 56/138 (40%), Gaps = 25/138 (18%)
Query: 13 PFRLHITILVQGAPALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGEAPKSLLQLLLLH 72
P LH+T V+ L G H+ V + P +GQ+ L GP + L+ L +
Sbjct: 665 PLFLHLTCSVR----LRGQHSSVPVC----SLPTCLGQVLSSLEGPPVGGRVPLRDLSVT 716
Query: 73 LTSLLHARLGLFLLLEQAPDSGHSPQMLHLRSSRLVESSRHMLWGGRAELPRAPGHDLGA 132
L + L L LE + PQ H RS+ ESS A PR+PG
Sbjct: 717 LDVFM-----LTLPLEVELPTASDPQ--HHRSTS--ESS--------ASFPRSPGQPSSL 759
Query: 133 WSPEGAGEDLLFTLEDAH 150
S +G G L E+ H
Sbjct: 760 RSDDGLGPPLPPPEEERH 777
>gi|168229226 hypothetical protein LOC401399 [Homo sapiens]
Length = 899
Score = 28.5 bits (62), Expect = 4.9
Identities = 37/115 (32%), Positives = 39/115 (33%), Gaps = 28/115 (24%)
Query: 26 PALAGLHAQDQVLPHKLTEPLLIGQLPGRLPGPGEAPKSLLQLLLLHLTSLLHARLGLFL 85
PALA L QD LP L L + L P P P L LLLL L A LG
Sbjct: 429 PALAWLLLQDLPLPC-LAAGLGLACLLLARPRPPRCPTGLAALLLLGLGLAAAAALG--- 484
Query: 86 LLEQAPDSGHSPQMLHLRSSRLVESSRHML--------------WGGRAELPRAP 126
+ H P LR RL H WGGR AP
Sbjct: 485 ------SAAHRP----LRPLRLASRGLHAFLAAFLSGLLLALSCWGGRRRRAGAP 529
>gi|239752162 PREDICTED: similar to hCG40360 [Homo sapiens]
Length = 131
Score = 27.7 bits (60), Expect = 8.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 106 RLVESSRHMLWGGRAELPRAP 126
RL+ SRH WGG LP P
Sbjct: 111 RLIPQSRHGEWGGHHPLPEGP 131
>gi|146229340 mutated in colorectal cancers isoform 1 [Homo sapiens]
Length = 1019
Score = 27.7 bits (60), Expect = 8.4
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 55 LPGPGEAPKSLLQLLLLHLTSLLHARLGLFLLLEQAPDSGHSPQMLHLRSSRLVESS 111
L P +S LQ LL + S LH + L LL Q+P G+S +L + + S+
Sbjct: 157 LQSPDVQSQSALQKLLEYGGSSLHQQAALHKLLTQSPHIGNSVGGSYLELANTLHSA 213
>gi|44771201 integrator complex subunit 5 [Homo sapiens]
Length = 1019
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 60 EAPKSLLQLLLLHLTSLLHARLG 82
EA L+QLLLLHL L+H R G
Sbjct: 433 EACDRLIQLLLLHLQKLVHHRGG 455
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,488,519
Number of Sequences: 37866
Number of extensions: 531987
Number of successful extensions: 1264
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1237
Number of HSP's gapped (non-prelim): 44
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.