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Search of human proteins with 169168482
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169168482 PREDICTED: hypothetical protein [Homo sapiens]
(89 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169167723 PREDICTED: hypothetical protein [Homo sapiens] 182 5e-47
gi|169168482 PREDICTED: hypothetical protein [Homo sapiens] 182 5e-47
gi|169167540 PREDICTED: hypothetical protein [Homo sapiens] 182 5e-47
gi|239753331 PREDICTED: hypothetical protein [Homo sapiens] 72 1e-13
gi|239747900 PREDICTED: hypothetical protein XP_002346471 [Homo ... 72 1e-13
gi|239741792 PREDICTED: hypothetical protein XP_002342302 [Homo ... 72 1e-13
gi|112789555 ADAM metallopeptidase with thrombospondin type 1 mo... 38 0.001
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 37 0.003
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ... 33 0.048
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 33 0.048
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 32 0.11
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 32 0.11
gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo sap... 32 0.11
gi|57222570 codanin 1 [Homo sapiens] 32 0.14
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 32 0.14
gi|124430752 kinesin family member 26B [Homo sapiens] 32 0.14
gi|45120119 microtubule associated serine/threonine kinase 1 [Ho... 31 0.18
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239753114 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|239748061 PREDICTED: hypothetical protein XP_002346523 [Homo ... 30 0.31
gi|239741954 PREDICTED: hypothetical protein XP_002342361 [Homo ... 30 0.31
gi|21264332 sialyltransferase 7A [Homo sapiens] 30 0.31
gi|6912458 calcineurin binding protein 1 [Homo sapiens] 30 0.31
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 30 0.41
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239752280 PREDICTED: similar to family with sequence similari... 30 0.41
gi|239746556 PREDICTED: hypothetical protein XP_002343778 [Homo ... 30 0.41
gi|210032463 family with sequence similarity 48, member B2 [Homo... 30 0.41
gi|92859678 small nuclear RNA activating complex, polypeptide 4,... 30 0.41
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 30 0.41
>gi|169167723 PREDICTED: hypothetical protein [Homo sapiens]
Length = 89
Score = 182 bits (462), Expect = 5e-47
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MVANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVP 60
MVANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVP
Sbjct: 1 MVANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVP 60
Query: 61 FSSHLPASRGSRLRPPPAPERGPHSAAAG 89
FSSHLPASRGSRLRPPPAPERGPHSAAAG
Sbjct: 61 FSSHLPASRGSRLRPPPAPERGPHSAAAG 89
>gi|169168482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 89
Score = 182 bits (462), Expect = 5e-47
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MVANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVP 60
MVANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVP
Sbjct: 1 MVANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVP 60
Query: 61 FSSHLPASRGSRLRPPPAPERGPHSAAAG 89
FSSHLPASRGSRLRPPPAPERGPHSAAAG
Sbjct: 61 FSSHLPASRGSRLRPPPAPERGPHSAAAG 89
>gi|169167540 PREDICTED: hypothetical protein [Homo sapiens]
Length = 89
Score = 182 bits (462), Expect = 5e-47
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MVANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVP 60
MVANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVP
Sbjct: 1 MVANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVP 60
Query: 61 FSSHLPASRGSRLRPPPAPERGPHSAAAG 89
FSSHLPASRGSRLRPPPAPERGPHSAAAG
Sbjct: 61 FSSHLPASRGSRLRPPPAPERGPHSAAAG 89
>gi|239753331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 71.6 bits (174), Expect = 1e-13
Identities = 45/88 (51%), Positives = 51/88 (57%), Gaps = 10/88 (11%)
Query: 2 VANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVPF 61
VA +P KRE ST G P +P R R R+ P G +R AQ +L P P
Sbjct: 61 VAKDPTKREGRSTHG---TQPPI---KPSRCR---DRAHPDPTPAG-QRCAQPQLLPAPL 110
Query: 62 SSHLPASRGSRLRPPPAPERGPHSAAAG 89
SSH P SRGSRLRP PAPE+GPHSAA G
Sbjct: 111 SSHFPESRGSRLRPQPAPEKGPHSAAGG 138
>gi|239747900 PREDICTED: hypothetical protein XP_002346471 [Homo
sapiens]
Length = 138
Score = 71.6 bits (174), Expect = 1e-13
Identities = 45/88 (51%), Positives = 51/88 (57%), Gaps = 10/88 (11%)
Query: 2 VANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVPF 61
VA +P KRE ST G P +P R R R+ P G +R AQ +L P P
Sbjct: 61 VAKDPTKREGRSTHG---TQPPI---KPSRCR---DRAHPDPTPAG-QRCAQPQLLPAPL 110
Query: 62 SSHLPASRGSRLRPPPAPERGPHSAAAG 89
SSH P SRGSRLRP PAPE+GPHSAA G
Sbjct: 111 SSHFPESRGSRLRPQPAPEKGPHSAAGG 138
>gi|239741792 PREDICTED: hypothetical protein XP_002342302 [Homo
sapiens]
Length = 138
Score = 71.6 bits (174), Expect = 1e-13
Identities = 45/88 (51%), Positives = 51/88 (57%), Gaps = 10/88 (11%)
Query: 2 VANNPAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVPF 61
VA +P KRE ST G P +P R R R+ P G +R AQ +L P P
Sbjct: 61 VAKDPTKREGRSTHG---TQPPI---KPSRCR---DRAHPDPTPAG-QRCAQPQLLPAPL 110
Query: 62 SSHLPASRGSRLRPPPAPERGPHSAAAG 89
SSH P SRGSRLRP PAPE+GPHSAA G
Sbjct: 111 SSHFPESRGSRLRPQPAPEKGPHSAAGG 138
>gi|112789555 ADAM metallopeptidase with thrombospondin type 1
motif, 19 preproprotein [Homo sapiens]
Length = 1207
Score = 38.1 bits (87), Expect = 0.001
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 12 WSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVPFSSHLPASRGS 71
W + G+ P VRG+ S QA G R R + PVP + S
Sbjct: 43 WRREPVDPAGGSGGSADPGWVRGVGGGGSARAQAAGSSREV-RSVAPVPLEEPVEGRSES 101
Query: 72 RLRPPPAPE 80
RLRPPP E
Sbjct: 102 RLRPPPPSE 110
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 37.0 bits (84), Expect = 0.003
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 18 SLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVPFSSHLPASRGSRLRPPP 77
S RS+P+ GR R G GR RR +RR + S+ P RG R RP P
Sbjct: 365 SPRSAPSSQGRGGRAAG----------GAGRRRRRRRRRRRSRSSASAPRRRGRR-RPRP 413
Query: 78 APERG 82
AP RG
Sbjct: 414 APPRG 418
Score = 30.0 bits (66), Expect = 0.41
Identities = 33/99 (33%), Positives = 42/99 (42%), Gaps = 22/99 (22%)
Query: 5 NPAKRERWSTQGFSLRSSPAGAGRPRRVR-----GLQSRSSPGTQALGRERRAQRRLQPV 59
+P+ R S+QG R++ GAGR RR R S S+P RR +RR +P
Sbjct: 363 SPSPRSAPSSQGRGGRAA-GGAGRRRRRRRRRRRSRSSASAP-------RRRGRRRPRPA 414
Query: 60 P---FSSHLPASRGS------RLRPPPAPERGPHSAAAG 89
P S L +R S R P P PE G G
Sbjct: 415 PPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGG 453
>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
sapiens]
Length = 402
Score = 33.1 bits (74), Expect = 0.048
Identities = 36/95 (37%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 8 KRERWSTQGFSLRSSPAGAGRPRRV-RGLQSRSSPGTQALGRERRAQRRLQP-VPFSSHL 65
+RE W T G LRS AG R L +R +A R RRL+P V SS L
Sbjct: 149 RRESWRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSL 208
Query: 66 ----PASRGSRL-------RPPPAPERGPHSAAAG 89
P R S L RPP GP AAAG
Sbjct: 209 SPGPPLQRSSSLNETLRGRRPP-----GPAPAAAG 238
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 33.1 bits (74), Expect = 0.048
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 20 RSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVPFSSHLPASRGSRLRPPPAP 79
RS + R R +S+SS +++ R R R P P S SR PP +P
Sbjct: 154 RSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSP 213
Query: 80 E 80
E
Sbjct: 214 E 214
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 18 SLRSSPAGAGRPR-------RVRGLQSRSSPGTQALGRERRAQRRLQPVPFSS-HLPASR 69
S RS P G G PR R +GL + S G R + P + H
Sbjct: 52 SPRSRPEGPGPPRPATPSARRPQGLSAGVSAGPAQRSRPLQLAGPRDRAPARALHARTRM 111
Query: 70 GSRLRPPPAPERGP 83
G R PPAP RGP
Sbjct: 112 GRAARGPPAPSRGP 125
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 18 SLRSSPAGAGRPR-------RVRGLQSRSSPGTQALGRERRAQRRLQPVPFSS-HLPASR 69
S RS P G G PR R +GL + S G R + P + H
Sbjct: 52 SPRSRPEGPGPPRPATPSARRPQGLSAGVSAGPAQRSRPLQLAGPRDRAPARALHARTRM 111
Query: 70 GSRLRPPPAPERGP 83
G R PPAP RGP
Sbjct: 112 GRAARGPPAPSRGP 125
>gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo
sapiens]
Length = 328
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 27 GRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVPFSSHLPASR----GSRLRPPPAPERG 82
GR G +S ++P + RRLQP P P + GS L+PPPAP R
Sbjct: 143 GREGGRAGAESETAPPPRT-----NKHRRLQPEPAPRPPPPAASFQPGSALQPPPAPPRR 197
Query: 83 PHSAA 87
SA+
Sbjct: 198 DDSAS 202
>gi|57222570 codanin 1 [Homo sapiens]
Length = 1227
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 13 STQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVP------FSSHLP 66
S+Q +L +SP G G P R LQ + L +ER Q + P P S LP
Sbjct: 225 SSQPSALDTSPWGLGLPPGCRSLQEE----REMLRKERSKQLQQSPTPTCPTPELGSPLP 280
Query: 67 ASRGSRLRPPPAPER 81
+ GS P P R
Sbjct: 281 SRTGSLTDEPADPAR 295
Score = 26.2 bits (56), Expect = 5.9
Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 19/87 (21%)
Query: 14 TQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGR------ERRAQRRLQPVP------- 60
T G S G PR RG +S+ P T+A RR RR P P
Sbjct: 75 TPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGPGPARERGGR 134
Query: 61 ------FSSHLPASRGSRLRPPPAPER 81
LP + G RLR +P R
Sbjct: 135 GLEEGVSGESLPGAGGRRLRGSGSPSR 161
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 31.6 bits (70), Expect = 0.14
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 21 SSPAGAG--RPRRVRGLQSRSSPGTQALGRERRAQRRLQP-----VPFSSHLPASRGSRL 73
+SPA AG RP + GL ++ P GR R++ + P P S+ P S
Sbjct: 1148 ASPAAAGHTRPSSLHGLAAKLGPPRPKTGR-RKSTSSIPPSPLACPPISAPPPRSPSPLP 1206
Query: 74 RPPPAPERGP 83
PPAP R P
Sbjct: 1207 GHPPAPARSP 1216
>gi|124430752 kinesin family member 26B [Homo sapiens]
Length = 2108
Score = 31.6 bits (70), Expect = 0.14
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 25/98 (25%)
Query: 8 KRERWSTQGFSL-RSSPAGAGRPRRV---------------RGLQSRSSPGTQALGRERR 51
K WSTQ S RSS + P R RGLQ R+ P +A R
Sbjct: 1778 KHTPWSTQSLSRNRSSGLASKLPLRAVSGRISELLQGGAGARGLQLRAGPEAEA-----R 1832
Query: 52 AQRRLQPVPFSSHLPASRGSRLRPPPAPERGPHSAAAG 89
+ P ++HL S S++ PP R PH ++G
Sbjct: 1833 GGALAEDEPAAAHLLPSPYSKITPP----RRPHRCSSG 1866
>gi|45120119 microtubule associated serine/threonine kinase 1 [Homo
sapiens]
Length = 1570
Score = 31.2 bits (69), Expect = 0.18
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 16 GFSLRSSPAGAGRPRRVRGLQSRSS----PGTQALGRERRAQRRLQPVPFSSHLPASRGS 71
G +LR G P R S +S + LG RR L+P FS+ +
Sbjct: 758 GLTLREKTWRGGSPEIKRFSASEASFLEGEASPPLGARRRFSALLEPSRFSAPQEDEDEA 817
Query: 72 RLRPPPAPERGP 83
RLR PP P P
Sbjct: 818 RLRRPPRPSSDP 829
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 30.8 bits (68), Expect = 0.24
Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 24/90 (26%)
Query: 22 SPAGAGRP---------RRVRGLQSRSSP---GTQALGRERRAQRRLQP----------- 58
SP AGRP RR R R+ P + LG+ RRAQRR P
Sbjct: 10 SPPWAGRPSGCNLVGAGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQ 69
Query: 59 -VPFSSHLPASRGSRLRPPPAPERGPHSAA 87
P S+ PA + P + RGP A
Sbjct: 70 RAPESNERPAEEPTPAPMPSSAPRGPTEPA 99
>gi|239753114 PREDICTED: hypothetical protein [Homo sapiens]
Length = 322
Score = 30.4 bits (67), Expect = 0.31
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 6 PAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRL--QPVPFSS 63
P RW T + + GA R +++R+S ALG + R + +P P
Sbjct: 129 PLPLSRWRTGSLTYVAGDLGASGAVSAR-VRARAS---LALGLPIQCHRHISTEPPPPPP 184
Query: 64 HLPASRGSRLRPPPAPERGP 83
PA+ ++ RP PAP R P
Sbjct: 185 AAPATGSAQSRPRPAPARAP 204
>gi|239748061 PREDICTED: hypothetical protein XP_002346523 [Homo
sapiens]
Length = 182
Score = 30.4 bits (67), Expect = 0.31
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 5 NPAKRER-WSTQGFSLR--------SSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRR 55
NP +R + W + LR S+PA R R Q+ + + RR
Sbjct: 62 NPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPA 121
Query: 56 LQPVPFSSHLP-ASRGSRLRPPPAPERGPHSAAAG 89
PFSSH P AS G P AP G + + G
Sbjct: 122 ASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHG 156
>gi|239741954 PREDICTED: hypothetical protein XP_002342361 [Homo
sapiens]
Length = 152
Score = 30.4 bits (67), Expect = 0.31
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 5 NPAKRER-WSTQGFSLR--------SSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRR 55
NP +R + W + LR S+PA R R Q+ + + RR
Sbjct: 32 NPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPA 91
Query: 56 LQPVPFSSHLP-ASRGSRLRPPPAPERGPHSAAAG 89
PFSSH P AS G P AP G + + G
Sbjct: 92 ASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHG 126
>gi|21264332 sialyltransferase 7A [Homo sapiens]
Length = 600
Score = 30.4 bits (67), Expect = 0.31
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 33 RGLQSRSSPGTQALGRERRAQRRLQPVPFS----------SHLPASRGSRLR--PPPAPE 80
R LQS + P +QA R RR +PVP + +H RG PP +
Sbjct: 54 RSLQSLAKPKSQAPTRARRTTIYAEPVPENNALNTQTQPKAHTTGDRGKEANQAPPEEQD 113
Query: 81 RGPHSA 86
+ PH+A
Sbjct: 114 KVPHTA 119
>gi|6912458 calcineurin binding protein 1 [Homo sapiens]
Length = 2220
Score = 30.4 bits (67), Expect = 0.31
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 20 RSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPVPFSSHLPASRGSRLRPPPAP 79
R+ P GRP R RG +SR T+ E R QP P + PA P PAP
Sbjct: 1775 RTPPLLPGRPARDRGPESRP---TELSLEELSISARQQPTPLTPAQPA-------PAPAP 1824
Query: 80 ERGPHSAAAG 89
+ A G
Sbjct: 1825 ATTTGTRAGG 1834
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 30.0 bits (66), Expect = 0.41
Identities = 36/102 (35%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 5 NPAKRERWS-TQGFSLR---SSPAGAGRPRRVR--GLQSRSSPGT---QALGRE----RR 51
+P R WS + F+ R SSP GR +R + G+ ++PG Q GR RR
Sbjct: 86 SPWGRWDWSPSPRFAARLSTSSPFPQGRAQRPQRGGVDLPATPGGPRGQCAGRSGDVLRR 145
Query: 52 AQRRLQPVPFSSHLPASRGSR-----LRPPPAPERG-PHSAA 87
A RR P LPA R R P P+P G PH A
Sbjct: 146 AGRRRARPPPVPRLPAPRAPRRPRGPATPDPSPPAGRPHGPA 187
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 16/93 (17%)
Query: 6 PAKRERWSTQGFSLRSSPAGAGRPRRVRGLQSRSSPGTQ---------ALGRERRAQRRL 56
P R W+ G AG +VRG + R+ PG+ +G R +
Sbjct: 213 PPPRALWNRHG-------GAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGV 265
Query: 57 QPVPFSSHLPASRGSRLRPPPAPERGPHSAAAG 89
Q FS+ S G+R P P+ R A G
Sbjct: 266 QRQRFSAPSSHSTGARTLPTPSRARPGKPAPRG 298
Score = 28.1 bits (61), Expect = 1.5
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 11 RWSTQGFSLRSSPAGAGRPRRV---RGLQSRSSPGTQALGRERRAQRRLQPVPFSSHLPA 67
R S LR G+G + V RG S GT AL RR R +PV +P
Sbjct: 297 RGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALAT-RRGSRAPRPVGVLRGVPH 355
Query: 68 SRGSRLRPPPAPERGPHSAAAG 89
R P +P R P A G
Sbjct: 356 FRPLSSPAPQSPPRSPSVRAFG 377
>gi|239752280 PREDICTED: similar to family with sequence similarity
48, member B2 [Homo sapiens]
Length = 779
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 19 LRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPV--PFSSHLPASRGSRLRPP 76
++SS +G G Q SS G + G Q+ P+ PF + PA + P
Sbjct: 411 VQSSVSGKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLKRPFPAAAPAVAAAAPAPA 470
Query: 77 PAPERGPHSAAA 88
PAP P AAA
Sbjct: 471 PAPAAAPALAAA 482
>gi|239746556 PREDICTED: hypothetical protein XP_002343778 [Homo
sapiens]
Length = 169
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 1 MVANNPAKRERWSTQGFSLRSSPAGA 26
++A +PAKR+ G SLRSSPAGA
Sbjct: 61 IMAKDPAKRDGGLRTGPSLRSSPAGA 86
>gi|210032463 family with sequence similarity 48, member B2 [Homo
sapiens]
Length = 817
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 19 LRSSPAGAGRPRRVRGLQSRSSPGTQALGRERRAQRRLQPV--PFSSHLPASRGSRLRPP 76
++SS +G G Q SS G + G Q+ P+ PF + PA + P
Sbjct: 449 VQSSVSGKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLKRPFPAAAPAVAAAAPAPA 508
Query: 77 PAPERGPHSAAA 88
PAP P AAA
Sbjct: 509 PAPAAAPALAAA 520
>gi|92859678 small nuclear RNA activating complex, polypeptide 4,
190kDa [Homo sapiens]
Length = 1469
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 11 RWSTQGFSLRSSPAGAGRPRRVRGL----QSRSSPGTQALGRERRAQRRLQPVPFSSHLP 66
R S+ + P +GR G+ + R +PG+ + +E R L+ +P P
Sbjct: 1188 RTSSHADPPEAEPPWSGRLPAFGGVIPATEPRGTPGSPSGTQEPRGPLGLEKLPLRQPGP 1247
Query: 67 ASRGSRLRPPPAPERGPHSAA 87
L PP P+ GP A
Sbjct: 1248 EKGALDLEKPPLPQPGPEKGA 1268
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 25 GAGRPRRVRGLQSRSSPGTQAL---------GRERRAQRRLQPVPFSSHLPASRGSRLRP 75
G RP R R SR PG AL G+ R+ RR + L A G+ +
Sbjct: 870 GEARPARGRKPGSRREPGRLALKWGTRGGFNGQMERSPRRTHHWQHNGEL-AEGGAEPKD 928
Query: 76 PPAPERGPHS 85
PP P GPHS
Sbjct: 929 PPPP--GPHS 936
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,741,323
Number of Sequences: 37866
Number of extensions: 255128
Number of successful extensions: 2022
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 1873
Number of HSP's gapped (non-prelim): 325
length of query: 89
length of database: 18,247,518
effective HSP length: 61
effective length of query: 28
effective length of database: 15,937,692
effective search space: 446255376
effective search space used: 446255376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.