Guide to the Human Genome
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Name: LOC730167 Sequence: fasta or formatted (170aa) NCBI GI: 169162376
Description:

PREDICTED: similar to protein tyrosine phosphatase 4a1 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {139aa} PREDICTED: similar to protein tyrosine phosphatase 4a1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         11           1
 C cysteine            3.5          6           2
 D aspartate           2.9          5           1
 E glutamate           5.9         10           2
 F phenylalanine       4.7          8           1
 G glycine             6.5         11           2
 H histidine           4.1          7           1
 I isoleucine          6.5         11           1
 K lysine              9.4         16           2
 L leucine             7.1         12           2
 M methionine          2.4          4           1
 N asparagine          6.5         11           2
 P proline             5.9         10           2
 Q glutamine           2.9          5           1
 R arginine            2.9          5           1
 S serine              3.5          6           1
 T threonine           5.3          9           2
 V valine              8.8         15           1
 W tryptophan          1.2          2           1
 Y tyrosine            3.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to protein tyrosine phosphatase ... 
PTP4A1                0.829   protein tyrosine phosphatase type IVA, member 1 [Homo...
LOC730167             0.766   PREDICTED: similar to protein tyrosine phosphatase ...
PTP4A2                0.730   protein tyrosine phosphatase type IVA, member 2 isof...
PTP4A3                0.679   protein tyrosine phosphatase type IVA, member 3 isof...
PTP4A3                0.529   protein tyrosine phosphatase type IVA, member 3 isof...
PTP4A2                0.246   protein tyrosine phosphatase type IVA, member 2 isof...
CDC14B                0.063   CDC14 homolog B isoform 3 
CDC14B                0.063   CDC14 homolog B isoform 1 
CDC14B                0.063   CDC14 homolog B isoform 2 
CDC14A                0.060   CDC14 homolog A isoform 3 
CDC14A                0.060   CDC14 homolog A isoform 1 
CDC14A                0.060   CDC14 homolog A isoform 2 
PTEN                  0.036   phosphatase and tensin homolog 
PTPDC1                0.021   protein tyrosine phosphatase domain containing 1 pro...
PTPDC1                0.021   protein tyrosine phosphatase domain containing 1 pro...
PTPRJ                 0.018   protein tyrosine phosphatase, receptor type, J isof...
ACVR2A                0.018   activin A receptor, type IIA precursor 
ABCC6                 0.015   ATP-binding cassette, sub-family C, member 6 isofor...
PTPRB                 0.012   protein tyrosine phosphatase, receptor type, B isof...
PTPRB                 0.012   protein tyrosine phosphatase, receptor type, B isof...
PTPRS                 0.012   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.012   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.012   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.012   protein tyrosine phosphatase, receptor type, sigma ...
PTPRD                 0.012   protein tyrosine phosphatase, receptor type, D isof...
PTPRD                 0.012   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.012   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.012   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.012   protein tyrosine phosphatase, receptor type, D isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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