Guide to the Human Genome
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Name: PTPDC1 Sequence: fasta or formatted (754aa) NCBI GI: 30089950
Description:

protein tyrosine phosphatase domain containing 1 protein isoform 2

Referenced in:

Dual-Specificity Phosphatases

Other entries for this name:
alt prot [806aa] protein tyrosine phosphatase domain containing 1 protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         57           2
 C cysteine            2.7         20           2
 D aspartate           4.2         32           1
 E glutamate           7.4         56           2
 F phenylalanine       3.4         26           1
 G glycine             5.7         43           2
 H histidine           3.8         29           1
 I isoleucine          4.8         36           2
 K lysine              6.4         48           2
 L leucine             9.9         75           3
 M methionine          2.5         19           2
 N asparagine          4.0         30           2
 P proline             6.0         45           2
 Q glutamine           5.2         39           2
 R arginine            5.3         40           2
 S serine              7.3         55           2
 T threonine           4.5         34           2
 V valine              6.1         46           1
 W tryptophan          1.2          9           1
 Y tyrosine            2.0         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase domain containing 1 pro... 
PTPDC1                0.963   protein tyrosine phosphatase domain containing 1 pro...
CDC14B                0.029   CDC14 homolog B isoform 3 
CDC14B                0.029   CDC14 homolog B isoform 1 
CDC14B                0.029   CDC14 homolog B isoform 2 
CDC14A                0.021   CDC14 homolog A isoform 3 
CDC14A                0.021   CDC14 homolog A isoform 1 
CDC14A                0.021   CDC14 homolog A isoform 2 
DUSP23                0.018   dual specificity phosphatase 23 
PTPRF                 0.013   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.013   protein tyrosine phosphatase, receptor type, F isof...
PTPN6                 0.012   protein tyrosine phosphatase, non-receptor type 6 is...
PTPN6                 0.012   protein tyrosine phosphatase, non-receptor type 6 is...
PTPN6                 0.012   protein tyrosine phosphatase, non-receptor type 6 is...
PTPRT                 0.012   protein tyrosine phosphatase, receptor type, T isof...
PTPRT                 0.012   protein tyrosine phosphatase, receptor type, T isof...
DUSP10                0.012   dual specificity phosphatase 10 isoform b 
DUSP10                0.012   dual specificity phosphatase 10 isoform b 
DUSP10                0.012   dual specificity phosphatase 10 isoform a 
CDKN3                 0.011   cyclin-dependent kinase inhibitor 3 isoform 2 [Homo...
CDKN3                 0.011   cyclin-dependent kinase inhibitor 3 isoform 1 
PTPRD                 0.011   protein tyrosine phosphatase, receptor type, D isof...
PTPRD                 0.011   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.011   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.011   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.011   protein tyrosine phosphatase, receptor type, D isofo...
PTP4A1                0.011   protein tyrosine phosphatase type IVA, member 1 [Homo...
PTP4A3                0.011   protein tyrosine phosphatase type IVA, member 3 isof...
PTPRS                 0.011   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.011   protein tyrosine phosphatase, receptor type, sigma ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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