Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PTP4A2 Sequence: fasta or formatted (82aa) NCBI GI: 18104973
Description:

protein tyrosine phosphatase type IVA, member 2 isoform 2

Referenced in:

Protein Tyrosine Phosphatases

Other entries for this name:
alt prot [167aa] protein tyrosine phosphatase type IVA, member 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3          6           2
 C cysteine            1.2          1           1
 D aspartate           2.4          2           1
 E glutamate           8.5          7           2
 F phenylalanine       4.9          4           1
 G glycine             4.9          4           1
 H histidine           2.4          2           1
 I isoleucine          4.9          4           1
 K lysine              9.8          8           3
 L leucine             7.3          6           1
 M methionine          2.4          2           1
 N asparagine          6.1          5           1
 P proline             6.1          5           1
 Q glutamine           2.4          2           1
 R arginine            3.7          3           1
 S serine              2.4          2           1
 T threonine          11.0          9           2
 V valine              8.5          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase type IVA, member 2 isof... 
PTP4A2                0.748   protein tyrosine phosphatase type IVA, member 2 isof...
PTP4A1                0.636   protein tyrosine phosphatase type IVA, member 1 [Homo...
LOC730167             0.573   PREDICTED: similar to protein tyrosine phosphatase ...
PTP4A3                0.559   protein tyrosine phosphatase type IVA, member 3 isof...
PTP4A3                0.559   protein tyrosine phosphatase type IVA, member 3 isof...
LOC730167             0.231   PREDICTED: similar to protein tyrosine phosphatase ...
U2AF1L4               0.021   U2 small nuclear RNA auxiliary factor 1-like 4 isofo...
U2AF1L4               0.014   U2 small nuclear RNA auxiliary factor 1-like 4 isofo...
C14orf135             0.007   hepatitis C virus F protein-binding protein 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press