Guide to the Human Genome
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Name: LOC730167 Sequence: fasta or formatted (139aa) NCBI GI: 239753025
Description:

PREDICTED: similar to protein tyrosine phosphatase 4a1 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {170aa} PREDICTED: similar to protein tyrosine phosphatase 4a1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5          9           1
 C cysteine            3.6          5           2
 D aspartate           3.6          5           1
 E glutamate           4.3          6           2
 F phenylalanine       5.8          8           1
 G glycine             6.5          9           2
 H histidine           4.3          6           1
 I isoleucine          6.5          9           1
 K lysine              9.4         13           1
 L leucine             6.5          9           2
 M methionine          2.9          4           1
 N asparagine          7.2         10           2
 P proline             7.2         10           2
 Q glutamine           3.6          5           1
 R arginine            2.9          4           1
 S serine              4.3          6           1
 T threonine           2.9          4           1
 V valine              7.9         11           1
 W tryptophan          1.4          2           1
 Y tyrosine            2.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to protein tyrosine phosphatase ... 
LOC730167             0.938   PREDICTED: similar to protein tyrosine phosphatase ...
PTP4A1                0.746   protein tyrosine phosphatase type IVA, member 1 [Homo...
PTP4A2                0.654   protein tyrosine phosphatase type IVA, member 2 isof...
PTP4A3                0.610   protein tyrosine phosphatase type IVA, member 3 isof...
PTP4A3                0.426   protein tyrosine phosphatase type IVA, member 3 isof...
PTP4A2                0.121   protein tyrosine phosphatase type IVA, member 2 isof...
CDC14A                0.037   CDC14 homolog A isoform 3 
CDC14A                0.037   CDC14 homolog A isoform 1 
CDC14A                0.037   CDC14 homolog A isoform 2 
PTEN                  0.029   phosphatase and tensin homolog 
CDC14B                0.029   CDC14 homolog B isoform 3 
CDC14B                0.029   CDC14 homolog B isoform 1 
CDC14B                0.029   CDC14 homolog B isoform 2 
PTPRS                 0.022   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.022   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.022   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.022   protein tyrosine phosphatase, receptor type, sigma ...
PTPRD                 0.022   protein tyrosine phosphatase, receptor type, D isof...
PTPRD                 0.022   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.022   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.022   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.022   protein tyrosine phosphatase, receptor type, D isofo...
ACVR2A                0.022   activin A receptor, type IIA precursor 
PTPRF                 0.018   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.018   protein tyrosine phosphatase, receptor type, F isof...
PTPDC1                0.018   protein tyrosine phosphatase domain containing 1 pro...
PTPDC1                0.018   protein tyrosine phosphatase domain containing 1 pro...
ABCC6                 0.015   ATP-binding cassette, sub-family C, member 6 isofor...
ACVR2B                0.015   activin A receptor, type IIB precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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