Guide to the Human Genome
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Name: PTP4A1 Sequence: fasta or formatted (173aa) NCBI GI: 4506283
Description:

protein tyrosine phosphatase type IVA, member 1

Referenced in:

Protein Tyrosine Phosphatases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         12           1
 C cysteine            3.5          6           2
 D aspartate           4.6          8           2
 E glutamate           6.4         11           2
 F phenylalanine       4.0          7           1
 G glycine             5.8         10           2
 H histidine           2.3          4           1
 I isoleucine          5.8         10           1
 K lysine              7.5         13           2
 L leucine             8.7         15           2
 M methionine          2.9          5           1
 N asparagine          5.8         10           2
 P proline             5.2          9           2
 Q glutamine           2.9          5           1
 R arginine            7.5         13           2
 S serine              2.3          4           1
 T threonine           5.2          9           2
 V valine              8.1         14           1
 W tryptophan          1.2          2           1
 Y tyrosine            3.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase type IVA, member 1 [Homo... 
PTP4A2                0.866   protein tyrosine phosphatase type IVA, member 2 isof...
LOC730167             0.824   PREDICTED: similar to protein tyrosine phosphatase ...
PTP4A3                0.797   protein tyrosine phosphatase type IVA, member 3 isof...
PTP4A3                0.624   protein tyrosine phosphatase type IVA, member 3 isof...
LOC730167             0.606   PREDICTED: similar to protein tyrosine phosphatase ...
PTP4A2                0.272   protein tyrosine phosphatase type IVA, member 2 isof...
CDC14B                0.090   CDC14 homolog B isoform 3 
CDC14B                0.090   CDC14 homolog B isoform 1 
CDC14B                0.090   CDC14 homolog B isoform 2 
CDC14A                0.084   CDC14 homolog A isoform 3 
CDC14A                0.084   CDC14 homolog A isoform 1 
CDC14A                0.084   CDC14 homolog A isoform 2 
PTEN                  0.057   phosphatase and tensin homolog 
PTPDC1                0.048   protein tyrosine phosphatase domain containing 1 pro...
PTPDC1                0.048   protein tyrosine phosphatase domain containing 1 pro...
PTPRS                 0.048   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.048   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.048   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.048   protein tyrosine phosphatase, receptor type, sigma ...
PTPRD                 0.048   protein tyrosine phosphatase, receptor type, D isof...
PTPRD                 0.048   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.048   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.048   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.048   protein tyrosine phosphatase, receptor type, D isofo...
PTPN12                0.042   protein tyrosine phosphatase, non-receptor type 12 ...
PTPN12                0.042   protein tyrosine phosphatase, non-receptor type 12 ...
PTPN12                0.042   protein tyrosine phosphatase, non-receptor type 12 ...
PTPRF                 0.042   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.042   protein tyrosine phosphatase, receptor type, F isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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