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Search of human proteins with 169162308
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169162308 PREDICTED: similar to hCG2036669 [Homo sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169162308 PREDICTED: similar to hCG2036669 [Homo sapiens] 489 e-139
gi|169161847 PREDICTED: similar to hCG2036669 [Homo sapiens] 489 e-139
gi|169162681 PREDICTED: hypothetical protein LOC649458 [Homo sap... 489 e-139
gi|4502133 serum amyloid P component precursor [Homo sapiens] 163 1e-40
gi|55770842 C-reactive protein, pentraxin-related [Homo sapiens] 144 6e-35
gi|148886654 polydom [Homo sapiens] 64 1e-10
gi|17402888 neuronal pentraxin receptor [Homo sapiens] 63 2e-10
gi|61966763 hypothetical protein LOC390667 [Homo sapiens] 58 8e-09
gi|28195384 neuronal pentraxin II [Homo sapiens] 54 1e-07
gi|240120161 G protein-coupled receptor 144 [Homo sapiens] 52 3e-07
gi|55770878 neuronal pentraxin I precursor [Homo sapiens] 51 7e-07
gi|167900484 pentraxin 3 [Homo sapiens] 50 2e-06
gi|239754887 PREDICTED: hypothetical protein XP_002346152 [Homo ... 29 2.9
gi|239749426 PREDICTED: hypothetical protein XP_002347042 [Homo ... 29 2.9
gi|239743560 PREDICTED: hypothetical protein XP_002342893 [Homo ... 29 2.9
gi|59710093 G-protein coupled receptor 112 [Homo sapiens] 29 2.9
gi|54606888 hypothetical protein LOC23251 [Homo sapiens] 28 8.5
gi|150456436 hypothetical protein LOC55719 isoform 1 [Homo sapiens] 28 8.5
gi|209915547 hypothetical protein LOC55719 isoform 2 [Homo sapiens] 28 8.5
>gi|169162308 PREDICTED: similar to hCG2036669 [Homo sapiens]
Length = 229
Score = 489 bits (1260), Expect = e-139
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MVFPLCRTKTLPVTTQYKKPNILLKTHGECDGEASSGYPAPHHSLERCDSEVKKPLKNFK 60
MVFPLCRTKTLPVTTQYKKPNILLKTHGECDGEASSGYPAPHHSLERCDSEVKKPLKNFK
Sbjct: 1 MVFPLCRTKTLPVTTQYKKPNILLKTHGECDGEASSGYPAPHHSLERCDSEVKKPLKNFK 60
Query: 61 LCLKTFTDFTCPYSLFYSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGPTPCPRSPYAS 120
LCLKTFTDFTCPYSLFYSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGPTPCPRSPYAS
Sbjct: 61 LCLKTFTDFTCPYSLFYSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGPTPCPRSPYAS 120
Query: 121 THVNVSWESASGIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
THVNVSWESASGIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV
Sbjct: 121 THVNVSWESASGIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
Query: 181 GVIWDVFLWDHVLPPKEMCDSCYSGSLLNRHTLTYEDNGYVVTKPKVWA 229
GVIWDVFLWDHVLPPKEMCDSCYSGSLLNRHTLTYEDNGYVVTKPKVWA
Sbjct: 181 GVIWDVFLWDHVLPPKEMCDSCYSGSLLNRHTLTYEDNGYVVTKPKVWA 229
>gi|169161847 PREDICTED: similar to hCG2036669 [Homo sapiens]
Length = 229
Score = 489 bits (1260), Expect = e-139
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MVFPLCRTKTLPVTTQYKKPNILLKTHGECDGEASSGYPAPHHSLERCDSEVKKPLKNFK 60
MVFPLCRTKTLPVTTQYKKPNILLKTHGECDGEASSGYPAPHHSLERCDSEVKKPLKNFK
Sbjct: 1 MVFPLCRTKTLPVTTQYKKPNILLKTHGECDGEASSGYPAPHHSLERCDSEVKKPLKNFK 60
Query: 61 LCLKTFTDFTCPYSLFYSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGPTPCPRSPYAS 120
LCLKTFTDFTCPYSLFYSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGPTPCPRSPYAS
Sbjct: 61 LCLKTFTDFTCPYSLFYSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGPTPCPRSPYAS 120
Query: 121 THVNVSWESASGIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
THVNVSWESASGIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV
Sbjct: 121 THVNVSWESASGIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
Query: 181 GVIWDVFLWDHVLPPKEMCDSCYSGSLLNRHTLTYEDNGYVVTKPKVWA 229
GVIWDVFLWDHVLPPKEMCDSCYSGSLLNRHTLTYEDNGYVVTKPKVWA
Sbjct: 181 GVIWDVFLWDHVLPPKEMCDSCYSGSLLNRHTLTYEDNGYVVTKPKVWA 229
>gi|169162681 PREDICTED: hypothetical protein LOC649458 [Homo
sapiens]
Length = 229
Score = 489 bits (1260), Expect = e-139
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MVFPLCRTKTLPVTTQYKKPNILLKTHGECDGEASSGYPAPHHSLERCDSEVKKPLKNFK 60
MVFPLCRTKTLPVTTQYKKPNILLKTHGECDGEASSGYPAPHHSLERCDSEVKKPLKNFK
Sbjct: 1 MVFPLCRTKTLPVTTQYKKPNILLKTHGECDGEASSGYPAPHHSLERCDSEVKKPLKNFK 60
Query: 61 LCLKTFTDFTCPYSLFYSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGPTPCPRSPYAS 120
LCLKTFTDFTCPYSLFYSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGPTPCPRSPYAS
Sbjct: 61 LCLKTFTDFTCPYSLFYSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGPTPCPRSPYAS 120
Query: 121 THVNVSWESASGIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
THVNVSWESASGIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV
Sbjct: 121 THVNVSWESASGIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
Query: 181 GVIWDVFLWDHVLPPKEMCDSCYSGSLLNRHTLTYEDNGYVVTKPKVWA 229
GVIWDVFLWDHVLPPKEMCDSCYSGSLLNRHTLTYEDNGYVVTKPKVWA
Sbjct: 181 GVIWDVFLWDHVLPPKEMCDSCYSGSLLNRHTLTYEDNGYVVTKPKVWA 229
>gi|4502133 serum amyloid P component precursor [Homo sapiens]
Length = 223
Score = 163 bits (412), Expect = 1e-40
Identities = 86/183 (46%), Positives = 119/183 (65%), Gaps = 11/183 (6%)
Query: 52 VKKPLKNFKLCLKTFTDFTCPYSLF-YSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGP 110
++KPL+NF LC + ++D + YSLF Y+T+ +DNELL+ ++G Y L+IG VT
Sbjct: 45 LEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVI 104
Query: 111 TPCPRSPYASTHVNVSWESASGIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFG 170
P A H+ VSWES+SGIA W NG + +KG+ +GY V + KI+LGQEQDS+G
Sbjct: 105 EKFP----APVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYG 160
Query: 171 GHFDENQSFVGVIWDVFLWDHVLPPKEMCDSCYSG-----SLLNRHTLTYEDNGYVVTKP 225
G FD +QSFVG I D+++WD VLPP+ + S Y G ++L+ L YE GYV+ KP
Sbjct: 161 GKFDRSQSFVGEIGDLYMWDSVLPPENIL-SAYQGTPLPANILDWQALNYEIRGYVIIKP 219
Query: 226 KVW 228
VW
Sbjct: 220 LVW 222
>gi|55770842 C-reactive protein, pentraxin-related [Homo sapiens]
Length = 224
Score = 144 bits (363), Expect = 6e-35
Identities = 83/182 (45%), Positives = 110/182 (60%), Gaps = 11/182 (6%)
Query: 54 KPLKNFKLCLKTFTDF--TCPYSLF-YSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGP 110
KPLK F +CL +T+ T YS+F Y+T+ QDNE+L+ +K Y +G + + F
Sbjct: 46 KPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSKDIGYSFTVGGSEILFE-- 103
Query: 111 TPCPRSPYASTHVNVSWESASGIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFG 170
P A H+ SWESASGI W +GK RK + KGY+VG EA IILGQEQDSFG
Sbjct: 104 --VPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKKGYTVGAEASIILGQEQDSFG 161
Query: 171 GHFDENQSFVGVIWDVFLWDHVLPPKEM----CDSCYSGSLLNRHTLTYEDNGYVVTKPK 226
G+F+ +QS VG I +V +WD VL P E+ +S ++LN L YE G V TKP+
Sbjct: 162 GNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPFSPNVLNWRALKYEVQGEVFTKPQ 221
Query: 227 VW 228
+W
Sbjct: 222 LW 223
>gi|148886654 polydom [Homo sapiens]
Length = 3571
Score = 63.5 bits (153), Expect = 1e-10
Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 63 LKTFTDFTCPYSLFYSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGPTPCPR-SPYAST 121
+K+ D + Y+ + + LLL + G L G +T CP +
Sbjct: 1457 MKSSDDMNYGTPISYAVDNGSDNTLLLTDYNGWVLYVNGREKIT-----NCPSVNDGRWH 1511
Query: 122 HVNVSWESASGIATLWANGKLV-GRKGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
H+ ++W SA+GI ++ +GKL G G+ G + ++LGQEQD G F +SFV
Sbjct: 1512 HIAITWTSANGIWKVYIDGKLSDGGAGLSVGLPIPGGGALVLGQEQDKKGEGFSPAESFV 1571
Query: 181 GVIWDVFLWDHVLPP---KEMCDSC 202
G I + LWD+VL P K + SC
Sbjct: 1572 GSISQLNLWDYVLSPQQVKSLATSC 1596
>gi|17402888 neuronal pentraxin receptor [Homo sapiens]
Length = 500
Score = 62.8 bits (151), Expect = 2e-10
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 72 PYSLFYSTRSQDNELLLLVNKMGMYLLHIGNAAVTFNGPTPCPRSPYASTHVNVSWESAS 131
P+S YS Q NE++LL L I + P H+ ++W +
Sbjct: 337 PFS--YSVPGQANEIVLLEAGHEPMELLINDKVAQL----PLSLKDNGWHHICIAWTTRD 390
Query: 132 GIATLWANGKLVGR-KGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFVGVIWDVFLWD 190
G+ + + +G+L G + + + + +ILGQEQD+ GG FD Q+FVG I LWD
Sbjct: 391 GLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQDTLGGRFDATQAFVGDIAQFNLWD 450
Query: 191 HVLPPKEMCDSCYSGSLLNRHTLTYED 217
H L P ++ + L + L +ED
Sbjct: 451 HALTPAQVLGIANCTAPLLGNVLPWED 477
>gi|61966763 hypothetical protein LOC390667 [Homo sapiens]
Length = 473
Score = 57.8 bits (138), Expect = 8e-09
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 122 HVNVSWESASGIATLWANGKLVGRKGVWK-GYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
H+ V W S G L + +LV ++ GY + ++LGQEQDS GG FD +++FV
Sbjct: 357 HICVIWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGGGFDSSEAFV 416
Query: 181 GVIWDVFLWDHVLPPKEMCD 200
G + + +WD L P E+ +
Sbjct: 417 GSMSGLAIWDRALVPGEVAN 436
>gi|28195384 neuronal pentraxin II [Homo sapiens]
Length = 431
Score = 53.9 bits (128), Expect = 1e-07
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 122 HVNVSWESASGIATLWANGKLVGR-KGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
H+ V+W + G+ + +G+ +G + + + + +ILGQEQD+ GG FD Q+FV
Sbjct: 311 HICVTWTTRDGMWEAFQDGEKLGTGENLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFV 370
Query: 181 GVIWDVFLWDHVLPPKEMCDSCYSGSLLNRHTLTYEDN 218
G + +WD VL +E+ + + + + + + DN
Sbjct: 371 GELSQFNIWDRVLRAQEIVNIANCSTNMPGNIIPWVDN 408
>gi|240120161 G protein-coupled receptor 144 [Homo sapiens]
Length = 963
Score = 52.4 bits (124), Expect = 3e-07
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 122 HVNVSWESASGIATLWANGKL-VGRKGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
HV +WE G L+++G+ G +G+ G+ V ++LGQ+QDS GG F +
Sbjct: 210 HVCATWEQRGGRWALFSDGRRRAGARGLGAGHPVPSGGILVLGQDQDSLGGGFSVRHALS 269
Query: 181 GVIWDVFLWDHVLPPKEM 198
G + D LW L P ++
Sbjct: 270 GNLTDFHLWARALSPAQL 287
>gi|55770878 neuronal pentraxin I precursor [Homo sapiens]
Length = 432
Score = 51.2 bits (121), Expect = 7e-07
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 122 HVNVSWESASGIATLWANGKLVGR-KGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
H+ V+W + G+ + +G G + + + + + ++LGQEQD+ GG FD Q+FV
Sbjct: 314 HICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQDTLGGGFDATQAFV 373
Query: 181 GVIWDVFLWDHVLPPKEM 198
G + +WD L P E+
Sbjct: 374 GELAHFNIWDRKLTPGEV 391
>gi|167900484 pentraxin 3 [Homo sapiens]
Length = 381
Score = 49.7 bits (117), Expect = 2e-06
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 121 THVNVSWESASGIATLWANGKLVGRK-GVWKGYSVGEEAKIILGQEQDS--FGGHFDENQ 177
TH+ +W S G+ +LW NG+L + G+ V E + +GQE++ GG FDE
Sbjct: 268 THLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETL 327
Query: 178 SFVGVIWDVFLWDHVLPPKEM-----CDSCY 203
+F G + +WD VL +E+ +SC+
Sbjct: 328 AFSGRLTGFNIWDSVLSNEEIRETGGAESCH 358
>gi|239754887 PREDICTED: hypothetical protein XP_002346152 [Homo
sapiens]
Length = 517
Score = 29.3 bits (64), Expect = 2.9
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 115 RSPYASTHVN-VSWESAS---GIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFG 170
R+ A HV W + G LWA + G G +G SV + ++ +G + +
Sbjct: 151 RAHRAVVHVKGAGWRQEARNRGTRGLWAESGVHGTGGRLRGASVVRDLRVAVGAGRRAVP 210
Query: 171 GHFDENQSFVGV 182
GH +S VGV
Sbjct: 211 GHRGGEESRVGV 222
>gi|239749426 PREDICTED: hypothetical protein XP_002347042 [Homo
sapiens]
Length = 517
Score = 29.3 bits (64), Expect = 2.9
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 115 RSPYASTHVN-VSWESAS---GIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFG 170
R+ A HV W + G LWA + G G +G SV + ++ +G + +
Sbjct: 151 RAHRAVVHVKGAGWRQEARNRGTRGLWAESGVHGTGGRLRGASVVRDLRVAVGAGRRAVP 210
Query: 171 GHFDENQSFVGV 182
GH +S VGV
Sbjct: 211 GHRGGEESRVGV 222
>gi|239743560 PREDICTED: hypothetical protein XP_002342893 [Homo
sapiens]
Length = 517
Score = 29.3 bits (64), Expect = 2.9
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 115 RSPYASTHVN-VSWESAS---GIATLWANGKLVGRKGVWKGYSVGEEAKIILGQEQDSFG 170
R+ A HV W + G LWA + G G +G SV + ++ +G + +
Sbjct: 151 RAHRAVVHVKGAGWRQEARNRGTRGLWAESGVHGTGGRLRGASVVRDLRVAVGAGRRAVP 210
Query: 171 GHFDENQSFVGV 182
GH +S VGV
Sbjct: 211 GHRGGEESRVGV 222
>gi|59710093 G-protein coupled receptor 112 [Homo sapiens]
Length = 3080
Score = 29.3 bits (64), Expect = 2.9
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 15/65 (23%)
Query: 169 FGGHFDENQS---------FVGVIWDVFLWDHVLPPKEMCDSCYSGSLLNRHTLTYEDNG 219
F GHF +N+S F G ++ LWDH+L +E C G++ +++E++
Sbjct: 159 FLGHFLKNESSEVKSMMRSFPGSLYYFQLWDHILENEEFM-KCLDGNI-----VSWEEDV 212
Query: 220 YVVTK 224
++V K
Sbjct: 213 WLVNK 217
>gi|54606888 hypothetical protein LOC23251 [Homo sapiens]
Length = 916
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 190 DHVLPPKEMCDSCYS--GSLLNRHTLTYEDN 218
+HVL PK+ D C S G +RHT+ + D+
Sbjct: 479 EHVLEPKKCRDLCTSGQGKYSDRHTMKHSDD 509
>gi|150456436 hypothetical protein LOC55719 isoform 1 [Homo sapiens]
Length = 1173
Score = 27.7 bits (60), Expect = 8.5
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 155 GEEAKIILGQEQ--DSFGGHFDENQSFV---GVIWDVFLWDHVLPPKEMCDSCYSGSLLN 209
G ++ I +G+E D G +E++ F+ V D H P +E+ + SG + N
Sbjct: 698 GIKSPIRIGEEDSTDDEDGLLEEHKEFLKKFSVTIDAIPDHH--PGEEIFNFLNSGKIFN 755
Query: 210 RHTLTYEDNGYV 221
++TL D+G++
Sbjct: 756 QYTLDLRDSGFI 767
>gi|209915547 hypothetical protein LOC55719 isoform 2 [Homo sapiens]
Length = 1186
Score = 27.7 bits (60), Expect = 8.5
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 155 GEEAKIILGQEQ--DSFGGHFDENQSFV---GVIWDVFLWDHVLPPKEMCDSCYSGSLLN 209
G ++ I +G+E D G +E++ F+ V D H P +E+ + SG + N
Sbjct: 698 GIKSPIRIGEEDSTDDEDGLLEEHKEFLKKFSVTIDAIPDHH--PGEEIFNFLNSGKIFN 755
Query: 210 RHTLTYEDNGYV 221
++TL D+G++
Sbjct: 756 QYTLDLRDSGFI 767
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,187,599
Number of Sequences: 37866
Number of extensions: 455374
Number of successful extensions: 911
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 886
Number of HSP's gapped (non-prelim): 20
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.