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Search of human proteins with 169160855
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169160855 PREDICTED: hypothetical protein [Homo sapiens]
(321 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169160855 PREDICTED: hypothetical protein [Homo sapiens] 653 0.0
gi|239747383 PREDICTED: hypothetical protein [Homo sapiens] 546 e-156
gi|239741208 PREDICTED: hypothetical protein [Homo sapiens] 546 e-156
gi|239753196 PREDICTED: hypothetical protein [Homo sapiens] 31 1.3
gi|239747770 PREDICTED: hypothetical protein XP_002348262 [Homo ... 31 1.3
gi|239741636 PREDICTED: hypothetical protein XP_002342253 [Homo ... 31 1.3
gi|50345881 cytoplasmic polyadenylation element binding protein ... 30 2.9
gi|189491748 ataxin 1 [Homo sapiens] 30 2.9
gi|51479158 ataxin 1 [Homo sapiens] 30 2.9
gi|239757132 PREDICTED: hypothetical protein [Homo sapiens] 30 2.9
gi|239751635 PREDICTED: hypothetical protein XP_002347941 [Homo ... 30 2.9
gi|239746147 PREDICTED: hypothetical protein XP_002344287 [Homo ... 30 2.9
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens] 30 3.7
gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo ... 29 6.4
gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo ... 29 6.4
gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo ... 29 6.4
gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo ... 29 6.4
gi|148886692 FAT tumor suppressor homolog 3 [Homo sapiens] 29 6.4
gi|4507041 solute carrier family 6 (neurotransmitter transporter... 28 8.4
gi|4758378 vascular endothelial growth factor D preproprotein [H... 28 8.4
>gi|169160855 PREDICTED: hypothetical protein [Homo sapiens]
Length = 321
Score = 653 bits (1684), Expect = 0.0
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 1 MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ 60
MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ
Sbjct: 1 MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ 60
Query: 61 NCPVDFEVLSEVLPLTVLNEKTLFMAITQMTITKYILGHESVVMGLIPLFSHLWVTGSSR 120
NCPVDFEVLSEVLPLTVLNEKTLFMAITQMTITKYILGHESVVMGLIPLFSHLWVTGSSR
Sbjct: 61 NCPVDFEVLSEVLPLTVLNEKTLFMAITQMTITKYILGHESVVMGLIPLFSHLWVTGSSR 120
Query: 121 EVMESFFRLLTLWLLPPTTLCLQTPGALAVPSLPEHVDVCFGFLTSALPKVFLEKGLNEV 180
EVMESFFRLLTLWLLPPTTLCLQTPGALAVPSLPEHVDVCFGFLTSALPKVFLEKGLNEV
Sbjct: 121 EVMESFFRLLTLWLLPPTTLCLQTPGALAVPSLPEHVDVCFGFLTSALPKVFLEKGLNEV 180
Query: 181 IFRVFVFGYTGASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMRPWYQAWLRRS 240
IFRVFVFGYTGASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMRPWYQAWLRRS
Sbjct: 181 IFRVFVFGYTGASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMRPWYQAWLRRS 240
Query: 241 SLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLEVTACFTNPTSY 300
SLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLEVTACFTNPTSY
Sbjct: 241 SLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLEVTACFTNPTSY 300
Query: 301 ATACIQGDVATGLSSDQGAEM 321
ATACIQGDVATGLSSDQGAEM
Sbjct: 301 ATACIQGDVATGLSSDQGAEM 321
>gi|239747383 PREDICTED: hypothetical protein [Homo sapiens]
Length = 291
Score = 546 bits (1408), Expect = e-156
Identities = 281/331 (84%), Positives = 281/331 (84%), Gaps = 50/331 (15%)
Query: 1 MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ 60
MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ
Sbjct: 1 MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ 60
Query: 61 NCPVDFEVLSEVLPLTVLNEKTLFMAITQMTITKYILGHESVVMGLIPLFSHLWVTGSSR 120
NCPVDFEVLSEVLPLT GSSR
Sbjct: 61 NCPVDFEVLSEVLPLT----------------------------------------GSSR 80
Query: 121 EVMES----------FFRLLTLWLLPPTTLCLQTPGALAVPSLPEHVDVCFGFLTSALPK 170
EVMES FFRLLTLWLLPPTTLCLQTPGALAVPSLPEHVDVCFGFLTSALPK
Sbjct: 81 EVMESVNNCQLNGAEFFRLLTLWLLPPTTLCLQTPGALAVPSLPEHVDVCFGFLTSALPK 140
Query: 171 VFLEKGLNEVIFRVFVFGYTGASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMR 230
VFLEKGLNEVIFRVFVFGYTGASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMR
Sbjct: 141 VFLEKGLNEVIFRVFVFGYTGASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMR 200
Query: 231 PWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLEV 290
PWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLEV
Sbjct: 201 PWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLEV 260
Query: 291 TACFTNPTSYATACIQGDVATGLSSDQGAEM 321
TACFTNPTSYATACIQGDVATGLSSDQGAEM
Sbjct: 261 TACFTNPTSYATACIQGDVATGLSSDQGAEM 291
>gi|239741208 PREDICTED: hypothetical protein [Homo sapiens]
Length = 291
Score = 546 bits (1408), Expect = e-156
Identities = 281/331 (84%), Positives = 281/331 (84%), Gaps = 50/331 (15%)
Query: 1 MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ 60
MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ
Sbjct: 1 MLLQAPQRHRPVDGLEDDGATLLGDGPAVAHVAAHQAGDGVEALHLELVLHAAVGLAESQ 60
Query: 61 NCPVDFEVLSEVLPLTVLNEKTLFMAITQMTITKYILGHESVVMGLIPLFSHLWVTGSSR 120
NCPVDFEVLSEVLPLT GSSR
Sbjct: 61 NCPVDFEVLSEVLPLT----------------------------------------GSSR 80
Query: 121 EVMES----------FFRLLTLWLLPPTTLCLQTPGALAVPSLPEHVDVCFGFLTSALPK 170
EVMES FFRLLTLWLLPPTTLCLQTPGALAVPSLPEHVDVCFGFLTSALPK
Sbjct: 81 EVMESVNNCQLNGAEFFRLLTLWLLPPTTLCLQTPGALAVPSLPEHVDVCFGFLTSALPK 140
Query: 171 VFLEKGLNEVIFRVFVFGYTGASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMR 230
VFLEKGLNEVIFRVFVFGYTGASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMR
Sbjct: 141 VFLEKGLNEVIFRVFVFGYTGASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMR 200
Query: 231 PWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLEV 290
PWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLEV
Sbjct: 201 PWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLEV 260
Query: 291 TACFTNPTSYATACIQGDVATGLSSDQGAEM 321
TACFTNPTSYATACIQGDVATGLSSDQGAEM
Sbjct: 261 TACFTNPTSYATACIQGDVATGLSSDQGAEM 291
>gi|239753196 PREDICTED: hypothetical protein [Homo sapiens]
Length = 406
Score = 31.2 bits (69), Expect = 1.3
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 230 RPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLE 289
RP L+ SS ++SS S FS SG +S + +C+T +T H +
Sbjct: 11 RPTCSLALKASSSRAATSSPS--FSASGAMSWAAAAATSCSTATT-------HVK----- 56
Query: 290 VTACFTNPTSYATACIQGDVATGL 313
CF S + C+ G + GL
Sbjct: 57 ---CFLQSRSVSDTCVPGQILDGL 77
>gi|239747770 PREDICTED: hypothetical protein XP_002348262 [Homo
sapiens]
Length = 406
Score = 31.2 bits (69), Expect = 1.3
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 230 RPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLE 289
RP L+ SS ++SS S FS SG +S + +C+T +T H +
Sbjct: 11 RPTCSLALKASSSRAATSSPS--FSASGAMSWAAAAATSCSTATT-------HVK----- 56
Query: 290 VTACFTNPTSYATACIQGDVATGL 313
CF S + C+ G + GL
Sbjct: 57 ---CFLQSRSVSDTCVPGQILDGL 77
>gi|239741636 PREDICTED: hypothetical protein XP_002342253 [Homo
sapiens]
Length = 406
Score = 31.2 bits (69), Expect = 1.3
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 230 RPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMMCLSLENCNTESTMSSPCPGHTRPCQLE 289
RP L+ SS ++SS S FS SG +S + +C+T +T H +
Sbjct: 11 RPTCSLALKASSSRAATSSPS--FSASGAMSWAAAAATSCSTATT-------HVK----- 56
Query: 290 VTACFTNPTSYATACIQGDVATGL 313
CF S + C+ G + GL
Sbjct: 57 ---CFLQSRSVSDTCVPGQILDGL 77
>gi|50345881 cytoplasmic polyadenylation element binding protein 3
[Homo sapiens]
Length = 698
Score = 30.0 bits (66), Expect = 2.9
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 106 LIPLFSHLWVTGSSREVMESFFRLLTLWLLPPTTLCLQTPGALAVPSLPEHVDVCFG 162
L P F W TG++ V +SFF+ +T G + + P HV+ FG
Sbjct: 103 LSPSFGSTWSTGTTNAVEDSFFQGIT-----------PVNGTMLFQNFPHHVNPVFG 148
>gi|189491748 ataxin 1 [Homo sapiens]
Length = 815
Score = 30.0 bits (66), Expect = 2.9
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 74 PLTVLNEKTLFMAITQMTITKYILGHESVVMGLIPLFSHLWVTGSSREVMESFFRLLTLW 133
PL V T F A TQ + Y+ G + + L HL + G+
Sbjct: 443 PLPVGLPATAFYAGTQPPVIGYLSGQQQAITYAGSLPQHLVIPGTQP------------L 490
Query: 134 LLPPTTLCLQTPGALA--VPSLPEHVDVCFGFLTSALPK 170
L+P + ++ GA V S P+ V F+T+ALPK
Sbjct: 491 LIPVGSTDMEASGAAPAIVTSSPQFAAVPHTFVTTALPK 529
>gi|51479158 ataxin 1 [Homo sapiens]
Length = 815
Score = 30.0 bits (66), Expect = 2.9
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 74 PLTVLNEKTLFMAITQMTITKYILGHESVVMGLIPLFSHLWVTGSSREVMESFFRLLTLW 133
PL V T F A TQ + Y+ G + + L HL + G+
Sbjct: 443 PLPVGLPATAFYAGTQPPVIGYLSGQQQAITYAGSLPQHLVIPGTQP------------L 490
Query: 134 LLPPTTLCLQTPGALA--VPSLPEHVDVCFGFLTSALPK 170
L+P + ++ GA V S P+ V F+T+ALPK
Sbjct: 491 LIPVGSTDMEASGAAPAIVTSSPQFAAVPHTFVTTALPK 529
>gi|239757132 PREDICTED: hypothetical protein [Homo sapiens]
Length = 583
Score = 30.0 bits (66), Expect = 2.9
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 226 CRGMRPWYQAWLRRSSLLRSSSSSSSFFSFSG 257
CR RP +AW R L SSS SS SF G
Sbjct: 94 CRSSRPSARAWASRRRTLISSSCSSPTTSFRG 125
>gi|239751635 PREDICTED: hypothetical protein XP_002347941 [Homo
sapiens]
Length = 241
Score = 30.0 bits (66), Expect = 2.9
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 226 CRGMRPWYQAWLRRSSLLRSSSSSSSFFSFSG 257
CR RP +AW R L SSS SS SF G
Sbjct: 94 CRSSRPSARAWASRRRTLISSSCSSPTTSFRG 125
>gi|239746147 PREDICTED: hypothetical protein XP_002344287 [Homo
sapiens]
Length = 241
Score = 30.0 bits (66), Expect = 2.9
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 226 CRGMRPWYQAWLRRSSLLRSSSSSSSFFSFSG 257
CR RP +AW R L SSS SS SF G
Sbjct: 94 CRSSRPSARAWASRRRTLISSSCSSPTTSFRG 125
>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
Length = 255
Score = 29.6 bits (65), Expect = 3.7
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 204 GHQSVHCLRAAVYAL-EGTRPGTCRGMRPWYQAWLRRSSLLRSSSSSSSFFSFSGVLSMM 262
GH S+HCL +A ++ +G RP ++ S SS SS S+ G S+
Sbjct: 38 GHYSMHCLHSAGHSQPDGAYSSASSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASLA 97
Query: 263 CLSLENCNTESTMSSPCPG 281
LE+ +S S+ G
Sbjct: 98 QSRLEDPGADSEKSTVVEG 116
>gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo
sapiens]
Length = 348
Score = 28.9 bits (63), Expect = 6.4
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 192 ASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMRPWYQAWL 237
++AH+ S W P+ +V A+ ++ RP CR R W +L
Sbjct: 255 STAHLPSSWFPSS-VTVFSQLASFFSAVPVRPSRCRSRRLWISTFL 299
>gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo
sapiens]
Length = 348
Score = 28.9 bits (63), Expect = 6.4
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 192 ASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMRPWYQAWL 237
++AH+ S W P+ +V A+ ++ RP CR R W +L
Sbjct: 255 STAHLPSSWFPSS-VTVFSQLASFFSAVPVRPSRCRSRRLWISTFL 299
>gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo
sapiens]
Length = 348
Score = 28.9 bits (63), Expect = 6.4
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 192 ASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMRPWYQAWL 237
++AH+ S W P+ +V A+ ++ RP CR R W +L
Sbjct: 255 STAHLPSSWFPSS-VTVFSQLASFFSAVPVRPSRCRSRRLWISTFL 299
>gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo
sapiens]
Length = 348
Score = 28.9 bits (63), Expect = 6.4
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 192 ASAHVASEWDPAGHQSVHCLRAAVYALEGTRPGTCRGMRPWYQAWL 237
++AH+ S W P+ +V A+ ++ RP CR R W +L
Sbjct: 255 STAHLPSSWFPSS-VTVFSQLASFFSAVPVRPSRCRSRRLWISTFL 299
>gi|148886692 FAT tumor suppressor homolog 3 [Homo sapiens]
Length = 4557
Score = 28.9 bits (63), Expect = 6.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 263 CLSLENCNTESTMSSPCPGHTRPCQLEVTACFTNPTSYATAC 304
C L + + T S G R C+ E+TACF NP +C
Sbjct: 4036 CTGLPSGGYQCTCLSQFTG--RNCESEITACFPNPCRNGGSC 4075
>gi|4507041 solute carrier family 6 (neurotransmitter transporter,
dopamine), member 3 [Homo sapiens]
Length = 620
Score = 28.5 bits (62), Expect = 8.4
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 73 LPLTVLNEKTLFMAITQMTITKYILGHESVVMGLIPLFSHLWVTGSSREVMESFFRLLTL 132
LPL+ F+ + + I + G ESV+ GLI F L RE+ F L T
Sbjct: 401 LPLSSAWAVVFFIMLLTLGIDSAMGGMESVITGLIDEFQLL---HRHRELFTLFIVLATF 457
Query: 133 WLLPPTTLCLQTPGALAVPSLPEH----VDVCFGFLTSAL 168
L +L T G + V +L +H + FG L A+
Sbjct: 458 LL----SLFCVTNGGIYVFTLLDHFAAGTSILFGVLIEAI 493
>gi|4758378 vascular endothelial growth factor D preproprotein [Homo
sapiens]
Length = 354
Score = 28.5 bits (62), Expect = 8.4
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
Query: 265 SLENCNTESTMSSP--------CPGHTRPCQLEVTAC 293
SLE C + + P CP HTRPC TAC
Sbjct: 296 SLETCCQKHKLFHPDTCSCEDRCPFHTRPCASGKTAC 332
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,929,125
Number of Sequences: 37866
Number of extensions: 570512
Number of successful extensions: 1495
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1485
Number of HSP's gapped (non-prelim): 25
length of query: 321
length of database: 18,247,518
effective HSP length: 102
effective length of query: 219
effective length of database: 14,385,186
effective search space: 3150355734
effective search space used: 3150355734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.