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Search of human proteins with 168480072
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|168480072 BCL2-related protein A1 isoform 2 [Homo sapiens]
(163 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|168480072 BCL2-related protein A1 isoform 2 [Homo sapiens] 335 8e-93
gi|4757840 BCL2-related protein A1 isoform 1 [Homo sapiens] 286 4e-78
gi|72198346 B-cell lymphoma protein 2 beta isoform [Homo sapiens] 60 1e-09
gi|72198189 B-cell lymphoma protein 2 alpha isoform [Homo sapiens] 60 1e-09
gi|20631964 BCL2-associated X protein isoform delta [Homo sapiens] 53 1e-07
gi|20336335 BCL2-like 1 isoform 1 [Homo sapiens] 52 3e-07
gi|4757838 BCL2-associated X protein isoform beta [Homo sapiens] 51 5e-07
gi|20631958 BCL2-associated X protein isoform alpha [Homo sapiens] 51 5e-07
gi|242117893 BCL2-associated X protein isoform sigma [Homo sapiens] 51 5e-07
gi|11386165 myeloid cell leukemia sequence 1 isoform 1 [Homo sap... 50 1e-06
gi|239751987 PREDICTED: hypothetical protein XP_002348091 [Homo ... 47 7e-06
gi|4757842 BCL2-like 2 protein [Homo sapiens] 47 7e-06
gi|4502363 BCL2-antagonist/killer 1 [Homo sapiens] 45 3e-05
gi|14210524 BCL2-related ovarian killer [Homo sapiens] 36 0.017
gi|238859651 pleckstrin homology domain containing family A memb... 33 0.14
gi|223633939 solute carrier family 39 (zinc transporter), member... 32 0.24
gi|223633937 solute carrier family 39 (zinc transporter), member... 32 0.24
gi|21040330 BCL2-like 14 isoform 1 [Homo sapiens] 29 1.6
gi|21040328 BCL2-like 14 isoform 1 [Homo sapiens] 29 1.6
gi|9966783 BCL2-like 10 (apoptosis facilitator) [Homo sapiens] 29 2.1
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 28 3.5
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 28 3.5
gi|94538350 protocadherin 17 precursor [Homo sapiens] 28 3.5
gi|7662168 suppression of tumorigenicity 18 [Homo sapiens] 28 4.6
gi|41352718 deltex homolog 1 [Homo sapiens] 28 4.6
gi|72534676 leucine rich repeat containing 17 isoform 1 [Homo sa... 27 6.0
gi|239582714 leucine rich repeat containing 17 isoform 2 [Homo s... 27 6.0
gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens] 27 6.0
gi|28603842 tetratricopeptide repeat domain 9C [Homo sapiens] 27 7.8
>gi|168480072 BCL2-related protein A1 isoform 2 [Homo sapiens]
Length = 163
Score = 335 bits (860), Expect = 8e-93
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN 60
MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN
Sbjct: 1 MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN 60
Query: 61 VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY 120
VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY
Sbjct: 61 VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY 120
Query: 121 FVAEFIMNNTGEWIRQNGGWGKWHNHTPMLVESVAHKKRKMAL 163
FVAEFIMNNTGEWIRQNGGWGKWHNHTPMLVESVAHKKRKMAL
Sbjct: 121 FVAEFIMNNTGEWIRQNGGWGKWHNHTPMLVESVAHKKRKMAL 163
>gi|4757840 BCL2-related protein A1 isoform 1 [Homo sapiens]
Length = 175
Score = 286 bits (733), Expect = 4e-78
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN 60
MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN
Sbjct: 1 MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN 60
Query: 61 VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY 120
VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY
Sbjct: 61 VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY 120
Query: 121 FVAEFIMNNTGEWIRQNGGW 140
FVAEFIMNNTGEWIRQNGGW
Sbjct: 121 FVAEFIMNNTGEWIRQNGGW 140
>gi|72198346 B-cell lymphoma protein 2 beta isoform [Homo sapiens]
Length = 205
Score = 59.7 bits (143), Expect = 1e-09
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 66 TARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEF 125
TAR F V+E+ F DG+ NWGRIV F F G++ + + ++++P VD I+ ++ E+
Sbjct: 125 TARGRFATVVEELFRDGV-NWGRIVAFFEFGGVMCVESVNREMSPLVD---NIALWMTEY 180
Query: 126 IMNNTGEWIRQNGGW 140
+ + WI+ NGGW
Sbjct: 181 LNRHLHTWIQDNGGW 195
>gi|72198189 B-cell lymphoma protein 2 alpha isoform [Homo sapiens]
Length = 239
Score = 59.7 bits (143), Expect = 1e-09
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 66 TARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEF 125
TAR F V+E+ F DG+ NWGRIV F F G++ + + ++++P VD I+ ++ E+
Sbjct: 125 TARGRFATVVEELFRDGV-NWGRIVAFFEFGGVMCVESVNREMSPLVD---NIALWMTEY 180
Query: 126 IMNNTGEWIRQNGGW 140
+ + WI+ NGGW
Sbjct: 181 LNRHLHTWIQDNGGW 195
>gi|20631964 BCL2-associated X protein isoform delta [Homo sapiens]
Length = 143
Score = 52.8 bits (125), Expect = 1e-07
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 27 GSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDGIINW 86
G GP+ + ++++ A +Q + V D+ R +F +V F DG NW
Sbjct: 10 GGGPTSSEQIMKTGALLLQGMIA-----------AVDTDSPREVFFRVAADMFSDGNFNW 58
Query: 87 GRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGW 140
GR+V +F F L+ K L ++ + + I + +F+ WI+ GGW
Sbjct: 59 GRVVALFYFASKLVLKALCTKVP---ELIRTIMGWTLDFLRERLLGWIQDQGGW 109
>gi|20336335 BCL2-like 1 isoform 1 [Homo sapiens]
Length = 233
Score = 51.6 bits (122), Expect = 3e-07
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 62 VSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYF 121
++ TA F QV+ + F DG+ NWGRIV F+F G L + + +++ V I+ +
Sbjct: 114 ITPGTAYQSFEQVVNELFRDGV-NWGRIVAFFSFGGALCVESVDKEMQVLV---SRIAAW 169
Query: 122 VAEFIMNNTGEWIRQNGGW 140
+A ++ ++ WI++NGGW
Sbjct: 170 MATYLNDHLEPWIQENGGW 188
>gi|4757838 BCL2-associated X protein isoform beta [Homo sapiens]
Length = 218
Score = 50.8 bits (120), Expect = 5e-07
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 23 IPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDG 82
+PQ S K S L+ + + +E + V D+ R +F +V F DG
Sbjct: 50 VPQDAS-TKKLSECLKRIGDELDSNMELQRM-----IAAVDTDSPREVFFRVAADMFSDG 103
Query: 83 IINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGW 140
NWGR+V +F F L+ K L ++ + + I + +F+ WI+ GGW
Sbjct: 104 NFNWGRVVALFYFASKLVLKALCTKVP---ELIRTIMGWTLDFLRERLLGWIQDQGGW 158
>gi|20631958 BCL2-associated X protein isoform alpha [Homo sapiens]
Length = 192
Score = 50.8 bits (120), Expect = 5e-07
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 23 IPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDG 82
+PQ S K S L+ + + +E + V D+ R +F +V F DG
Sbjct: 50 VPQDAS-TKKLSECLKRIGDELDSNMELQRM-----IAAVDTDSPREVFFRVAADMFSDG 103
Query: 83 IINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGW 140
NWGR+V +F F L+ K L ++ + + I + +F+ WI+ GGW
Sbjct: 104 NFNWGRVVALFYFASKLVLKALCTKVP---ELIRTIMGWTLDFLRERLLGWIQDQGGW 158
>gi|242117893 BCL2-associated X protein isoform sigma [Homo sapiens]
Length = 179
Score = 50.8 bits (120), Expect = 5e-07
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 23 IPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDG 82
+PQ S K S L+ + + +E + V D+ R +F +V F DG
Sbjct: 50 VPQDAS-TKKLSECLKRIGDELDSNMELQRM-----IAAVDTDSPREVFFRVAADMFSDG 103
Query: 83 IINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGW 140
NWGR+V +F F L+ K L ++ + + I + +F+ WI+ GGW
Sbjct: 104 NFNWGRVVALFYFASKLVLKALCTKVP---ELIRTIMGWTLDFLRERLLGWIQDQGGW 158
>gi|11386165 myeloid cell leukemia sequence 1 isoform 1 [Homo
sapiens]
Length = 350
Score = 49.7 bits (117), Expect = 1e-06
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 27 GSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDGIINW 86
G+ K L+ V VQ+ E + L +++ + D ++L ++VM F DG+ NW
Sbjct: 203 GATSRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSL-SRVMIHVFSDGVTNW 261
Query: 87 GRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGW 140
GRIVT+ +F + K L + + ++ + + ++ +W+ + GW
Sbjct: 262 GRIVTLISFGAFVAKHL---KTINQESCIEPLAESITDVLVRTKRDWLVKQRGW 312
>gi|239751987 PREDICTED: hypothetical protein XP_002348091 [Homo
sapiens]
Length = 211
Score = 47.0 bits (110), Expect = 7e-06
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 25 QPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDGII 84
QP S + R L + + + + ++ L ++ + + A F ++ FE GI
Sbjct: 66 QPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQPTA-ENAYEYFTKIASSLFESGI- 123
Query: 85 NWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNN-TGEWIRQNGGW 140
NWGR+V + F L + ++ + + +++ FV +F++++ WI Q GGW
Sbjct: 124 NWGRVVALLGFSYRLALHIYQRGLTGFLG---QVTRFVVDFMLHHCIARWIAQRGGW 177
>gi|4757842 BCL2-like 2 protein [Homo sapiens]
Length = 193
Score = 47.0 bits (110), Expect = 7e-06
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 26 PGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNV---VSVDTARTLFNQVMEKEFEDG 82
PG GP+ L + E E + ++ V+ +A+ F QV ++ F+ G
Sbjct: 33 PGEGPAADP--LHQAMRAAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGG 90
Query: 83 IINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGWGK 142
NWGR+V F F L + + +++ P V +E ++ ++ +WI +GGW +
Sbjct: 91 P-NWGRLVAFFVFGAALCAESVNKEMEPLVGQVQE---WMVAYLETRLADWIHSSGGWAE 146
Query: 143 W 143
+
Sbjct: 147 F 147
>gi|4502363 BCL2-antagonist/killer 1 [Homo sapiens]
Length = 211
Score = 45.1 bits (105), Expect = 3e-05
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 25 QPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDGII 84
QP S + R L + + + + ++ L ++ + + A F ++ FE GI
Sbjct: 66 QPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQPTA-ENAYEYFTKIATSLFESGI- 123
Query: 85 NWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNN-TGEWIRQNGGW 140
NWGR+V + F L + + + + +++ FV +F++++ WI Q GGW
Sbjct: 124 NWGRVVALLGFGYRLALHVYQHGLTGFLG---QVTRFVVDFMLHHCIARWIAQRGGW 177
>gi|14210524 BCL2-related ovarian killer [Homo sapiens]
Length = 212
Score = 35.8 bits (81), Expect = 0.017
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 37 LQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFE 96
L+ + SV + V + L L + VV+ F V F GI WG++V+++A
Sbjct: 77 LEMIRPSVYRNVARQLHISLQSEPVVT-----DAFLAVAGHIFSAGI-TWGKVVSLYAVA 130
Query: 97 GILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGW 140
L +RQ V + + EF+ W+R+ GGW
Sbjct: 131 AGLAVDCVRQAQPAMVHALVDC---LGEFVRKTLATWLRRRGGW 171
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 32.7 bits (73), Expect = 0.14
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 110 PDVDTYKEISYFVAEFIMNNTGEWIRQNGGWGKWHNHTPMLVESVAHKKRKMAL 163
PDV+ + + A+ +W+R +G W N TP L S H++R ++L
Sbjct: 630 PDVEQRPVVGHSGAQ-------KWLRSSGSWSSPRNTTPYLPTSEGHRERVLSL 676
>gi|223633939 solute carrier family 39 (zinc transporter), member 12
isoform 1 [Homo sapiens]
Length = 691
Score = 32.0 bits (71), Expect = 0.24
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 60 NVVSVDTARTLFNQVMEKEFEDGIINWG-------RIVTIFAFEGI-LIKKLLRQQIAPD 111
N+++ D + F+ MEKE EDG ++W ++V IF +G+ LI K +Q++P
Sbjct: 280 NIITHDQDYSNFSSSMEKESEDGPVSWDQTCFSARQLVEIFLQKGLSLISKEDFKQMSPG 339
Query: 112 V 112
+
Sbjct: 340 I 340
>gi|223633937 solute carrier family 39 (zinc transporter), member 12
isoform 2 [Homo sapiens]
Length = 654
Score = 32.0 bits (71), Expect = 0.24
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 60 NVVSVDTARTLFNQVMEKEFEDGIINWG-------RIVTIFAFEGI-LIKKLLRQQIAPD 111
N+++ D + F+ MEKE EDG ++W ++V IF +G+ LI K +Q++P
Sbjct: 280 NIITHDQDYSNFSSSMEKESEDGPVSWDQTCFSARQLVEIFLQKGLSLISKEDFKQMSPG 339
Query: 112 V 112
+
Sbjct: 340 I 340
>gi|21040330 BCL2-like 14 isoform 1 [Homo sapiens]
Length = 327
Score = 29.3 bits (64), Expect = 1.6
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 95 FEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGWGK 142
F+ L+ + + A D + F +++ N WI+Q+GGW K
Sbjct: 270 FKAALVIDVTAKLTAIDNHPMNRVLGFGTKYLKENFSPWIQQHGGWEK 317
>gi|21040328 BCL2-like 14 isoform 1 [Homo sapiens]
Length = 327
Score = 29.3 bits (64), Expect = 1.6
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 95 FEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGWGK 142
F+ L+ + + A D + F +++ N WI+Q+GGW K
Sbjct: 270 FKAALVIDVTAKLTAIDNHPMNRVLGFGTKYLKENFSPWIQQHGGWEK 317
>gi|9966783 BCL2-like 10 (apoptosis facilitator) [Homo sapiens]
Length = 204
Score = 28.9 bits (63), Expect = 2.1
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 86 WGRIVTIFAFEGILIKK---------------LLRQQIAPDVDTYKEISYFVAEFIMNNT 130
WGR+VT+ F G L+++ L++Q + + ++ +M
Sbjct: 94 WGRVVTLVTFAGTLLERGPLVTARWKKWGFQPRLKEQEGDVARDCQRLVALLSSRLMGQH 153
Query: 131 GEWIRQNGGW 140
W++ GGW
Sbjct: 154 RAWLQAQGGW 163
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 28.1 bits (61), Expect = 3.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 34 SRVLQNVAFSVQKEVEKNLKSCLDNVNVVS 63
++VLQ S+++ +EK K C++ +N+ S
Sbjct: 5938 NKVLQTADISIEEMIEKLQKDCMEEINLFS 5967
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 28.1 bits (61), Expect = 3.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 34 SRVLQNVAFSVQKEVEKNLKSCLDNVNVVS 63
++VLQ S+++ +EK K C++ +N+ S
Sbjct: 5938 NKVLQTADISIEEMIEKLQKDCMEEINLFS 5967
>gi|94538350 protocadherin 17 precursor [Homo sapiens]
Length = 1159
Score = 28.1 bits (61), Expect = 3.5
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 24 PQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTART 69
PQ G G K ++ +N VQ EVE+ ++ ++ +NVVS + T
Sbjct: 750 PQLGGGKGKKKKINKNDIMLVQSEVEE--RNAMNVMNVVSSPSLAT 793
>gi|7662168 suppression of tumorigenicity 18 [Homo sapiens]
Length = 1047
Score = 27.7 bits (60), Expect = 4.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 23 IPQPGSGPSKTSRVLQNVAF 42
IP P S P KTS +L N AF
Sbjct: 637 IPTPSSSPFKTSSILVNAAF 656
>gi|41352718 deltex homolog 1 [Homo sapiens]
Length = 620
Score = 27.7 bits (60), Expect = 4.6
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 19 CVLQIPQPGSGPSKTSRV----LQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQV 74
C+ + P+P P S+ + V +K +K+LK + +VV R +V
Sbjct: 349 CLTRAPKPILHPPPVSKSDVKPVPGVPGVCRKTKKKHLKKSKNPEDVV-----RRYMQKV 403
Query: 75 MEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQI 108
ED I R+VT +EG+L K +R ++
Sbjct: 404 KNPPDEDCTICMERLVTASGYEGVLRHKGVRPEL 437
>gi|72534676 leucine rich repeat containing 17 isoform 1 [Homo
sapiens]
Length = 441
Score = 27.3 bits (59), Expect = 6.0
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 30 PSKTSRVLQNVAFSVQKE--VEKNLKSCLDNV--NVVSVDTARTLFNQVMEKEFED 81
P S N F +Q K LK +N+ ++V +D + NQ+ KEFED
Sbjct: 235 PEVDSTFCHNYVFPIQTLDCKRKELKKVPNNIPPDIVKLDLSYNKINQLRPKEFED 290
>gi|239582714 leucine rich repeat containing 17 isoform 2 [Homo
sapiens]
Length = 313
Score = 27.3 bits (59), Expect = 6.0
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 30 PSKTSRVLQNVAFSVQKE--VEKNLKSCLDNV--NVVSVDTARTLFNQVMEKEFED 81
P S N F +Q K LK +N+ ++V +D + NQ+ KEFED
Sbjct: 235 PEVDSTFCHNYVFPIQTLDCKRKELKKVPNNIPPDIVKLDLSYNKINQLRPKEFED 290
>gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens]
Length = 239
Score = 27.3 bits (59), Expect = 6.0
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 21 LQIPQPGS----GPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVME 76
L P PG GP++ S + + S + E +L +CL +V+ + R +V+E
Sbjct: 106 LPAPAPGPTSSPGPARLSEEQRRLVESTEVECYDSLTACLLQSELVNYERVREYCLKVLE 165
Query: 77 KE 78
K+
Sbjct: 166 KQ 167
>gi|28603842 tetratricopeptide repeat domain 9C [Homo sapiens]
Length = 171
Score = 26.9 bits (58), Expect = 7.8
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 21 LQIPQPGSGPSKTSRV--LQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKE 78
L P P GP + +N+ + Q + NL +CL + V+ + R +V+E++
Sbjct: 45 LPSPLPNLGPQGPALTPEQENILHTTQTDCYNNLAACLLQMEPVNYERVREYSQKVLERQ 104
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,901,181
Number of Sequences: 37866
Number of extensions: 212862
Number of successful extensions: 578
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 31
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.