Guide to the Human Genome
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Search of human proteins with 167555099

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|167555099 PAP associated domain containing 4 [Homo sapiens]
         (484 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|167555099 PAP associated domain containing 4 [Homo sapiens]        984   0.0  
gi|167555097 PAP associated domain containing 4 [Homo sapiens]        984   0.0  
gi|167555095 PAP associated domain containing 4 [Homo sapiens]        984   0.0  
gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]      158   9e-39
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho...   151   1e-36
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho...   151   1e-36
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho...   151   1e-36
gi|190194365 PAP associated domain containing 1 [Homo sapiens]         86   8e-17
gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific ...    72   9e-13
gi|5902142 DNA polymerase sigma [Homo sapiens]                         68   2e-11
gi|94536832 PAP associated domain containing 5 isoform b [Homo s...    59   1e-08
gi|94536834 PAP associated domain containing 5 isoform a [Homo s...    59   1e-08
gi|27886520 nuclear factor of activated T-cells 5 isoform a [Hom...    32   0.99 
gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo...    32   0.99 
gi|164419746 nuclear factor of activated T-cells 5 isoform d [Ho...    32   0.99 
gi|164419744 nuclear factor of activated T-cells 5 isoform b [Ho...    32   0.99 
gi|27886524 nuclear factor of activated T-cells 5 isoform a [Hom...    32   0.99 
gi|41152070 zinc finger protein 75 [Homo sapiens]                      32   1.3  
gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]              31   2.9  
gi|18765711 four jointed box 1 [Homo sapiens]                          30   6.4  
gi|148806891 hypothetical protein LOC54906 [Homo sapiens]              29   8.4  

>gi|167555099 PAP associated domain containing 4 [Homo sapiens]
          Length = 484

 Score =  984 bits (2544), Expect = 0.0
 Identities = 484/484 (100%), Positives = 484/484 (100%)

Query: 1   MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN 60
           MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN
Sbjct: 1   MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN 60

Query: 61  VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL 120
           VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL
Sbjct: 61  VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL 120

Query: 121 FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC 180
           FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC
Sbjct: 121 FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC 180

Query: 181 RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT 240
           RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT
Sbjct: 181 RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT 240

Query: 241 LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL 300
           LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL
Sbjct: 241 LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL 300

Query: 301 ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF 360
           ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF
Sbjct: 301 ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF 360

Query: 361 SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP 420
           SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP
Sbjct: 361 SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP 420

Query: 421 DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA 480
           DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA
Sbjct: 421 DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA 480

Query: 481 VLKR 484
           VLKR
Sbjct: 481 VLKR 484


>gi|167555097 PAP associated domain containing 4 [Homo sapiens]
          Length = 484

 Score =  984 bits (2544), Expect = 0.0
 Identities = 484/484 (100%), Positives = 484/484 (100%)

Query: 1   MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN 60
           MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN
Sbjct: 1   MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN 60

Query: 61  VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL 120
           VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL
Sbjct: 61  VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL 120

Query: 121 FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC 180
           FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC
Sbjct: 121 FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC 180

Query: 181 RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT 240
           RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT
Sbjct: 181 RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT 240

Query: 241 LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL 300
           LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL
Sbjct: 241 LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL 300

Query: 301 ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF 360
           ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF
Sbjct: 301 ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF 360

Query: 361 SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP 420
           SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP
Sbjct: 361 SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP 420

Query: 421 DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA 480
           DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA
Sbjct: 421 DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA 480

Query: 481 VLKR 484
           VLKR
Sbjct: 481 VLKR 484


>gi|167555095 PAP associated domain containing 4 [Homo sapiens]
          Length = 484

 Score =  984 bits (2544), Expect = 0.0
 Identities = 484/484 (100%), Positives = 484/484 (100%)

Query: 1   MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN 60
           MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN
Sbjct: 1   MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN 60

Query: 61  VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL 120
           VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL
Sbjct: 61  VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL 120

Query: 121 FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC 180
           FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC
Sbjct: 121 FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC 180

Query: 181 RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT 240
           RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT
Sbjct: 181 RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT 240

Query: 241 LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL 300
           LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL
Sbjct: 241 LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL 300

Query: 301 ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF 360
           ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF
Sbjct: 301 ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF 360

Query: 361 SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP 420
           SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP
Sbjct: 361 SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP 420

Query: 421 DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA 480
           DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA
Sbjct: 421 DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA 480

Query: 481 VLKR 484
           VLKR
Sbjct: 481 VLKR 484


>gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]
          Length = 1495

 Score =  158 bits (400), Expect = 9e-39
 Identities = 121/398 (30%), Positives = 193/398 (48%), Gaps = 37/398 (9%)

Query: 76   KRLSDEKNLPLDGK------RQRFHSPHQEPTVVNQIVPLSGERRYSMPPLFHTHYVPDI 129
            + + +EKN P+D         +   +  + PTVV  +    G            H   D 
Sbjct: 931  ENVCEEKNSPVDQSDFFYEFSKLIFTKGKSPTVVCSLCKREG------------HLKKD- 977

Query: 130  VRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELCRTQLQREIQ 189
              C   F+ I  LEP     P+  + L Q  ++ ++     I + + +E  R  L+  I+
Sbjct: 978  --CPEDFKRIQ-LEPLPPLTPKFLNILDQVCIQCYKDFSPTIIEDQAREHIRQNLESFIR 1034

Query: 190  LLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTR 249
              FP ++L L GSS NGFG + SD D+C+ +        ++       +  ++ KH    
Sbjct: 1035 QDFPGTKLSLFGSSKNGFGFKQSDLDVCMTINGLETAEGLDCVRTIEELARVLRKH---- 1090

Query: 250  LSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVL 309
             SG      +  AKVPIVKF    S +E D+++ N + + NT LL  Y+ ++ RV+ L  
Sbjct: 1091 -SGLRNILPITTAKVPIVKFFHLRSGLEVDISLYNTLALHNTRLLSAYSAIDPRVKYLCY 1149

Query: 310  VIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIY-----PESFSPAI 364
             +K +     I DASRG+LSSY+  LMVL++LQ    P++P LQ+IY     PE F    
Sbjct: 1150 TMKVFTKMCDIGDASRGSLSSYAYTLMVLYFLQQRNPPVIPVLQEIYKGEKKPEIFVDGW 1209

Query: 365  QLHLVHQAPCNVPPYLS---KNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPD 421
             ++   Q    +P Y S   KN  ++G L LG L++Y  EFD+   +IS+R  K++    
Sbjct: 1210 NIYFFDQID-ELPTYWSECGKNTESVGQLWLGLLRFYTEEFDFKEHVISIRR-KSLLTTF 1267

Query: 422  GIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFL 459
              +W +KYI +E+PFD  +   A   ++  + I   F+
Sbjct: 1268 KKQWTSKYIVIEDPFDLNHNLGAGLSRKMTNFIMKAFI 1305



 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 78/317 (24%), Positives = 135/317 (42%), Gaps = 57/317 (17%)

Query: 181 RTQLQREIQLLF----PQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEAR 236
           R +++R ++ +F    P   L L GSS +  G ++SD ++ +         Q        
Sbjct: 316 RLEIKRIMENVFQHKLPDCSLRLYGSSCSRLGFKNSDVNIDI---------QFPAIMSQP 366

Query: 237 HILTLVHKHFCTRLS-GYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLR 295
            +L LV +  C + S  +I+      A+VP+V  R+K S +   ++  N      T  L 
Sbjct: 367 DVLLLVQE--CLKNSDSFIDVDADFHARVPVVVCREKQSGLLCKVSAGNENACLTTKHLT 424

Query: 296 TYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKI 355
               LE ++ PLV+  + WA    I+    G L  Y   LM + +LQ   EP+LP     
Sbjct: 425 ALGKLEPKLVPLVIAFRYWAKLCSIDRPEEGGLPPYVFALMAIFFLQQRKEPLLPVYLGS 484

Query: 356 YPESFSPA---------IQLHLV----------------HQAPCNVPPYLSKNESNL--- 387
           + E FS +         I+  +V                 +AP   P  + + + +L   
Sbjct: 485 WIEGFSLSKLGNFNLQDIEKDVVIWEHTDSAAGDTGITKEEAPRETP--IKRGQVSLILD 542

Query: 388 ---------GDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIEWRNKYICVEEPFD- 437
                    G L +  L++YA EF+    +IS+R  + + R +  +W  K I +E+P+  
Sbjct: 543 VKHQPSVPVGQLWVELLRFYALEFNLADLVISIRVKELVSR-ELKDWPKKRIAIEDPYSV 601

Query: 438 GTNTARAVHEKQKFDMI 454
             N AR ++ +  F+ I
Sbjct: 602 KRNVARTLNSQPVFEYI 618


>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
            sapiens]
          Length = 1645

 Score =  151 bits (382), Expect = 1e-36
 Identities = 119/395 (30%), Positives = 191/395 (48%), Gaps = 36/395 (9%)

Query: 78   LSDEKNLPLDGKRQRFH----SPHQEPTVVNQIVPLSGERRYSMPPLFHTHYVPDIVRCV 133
            L+D+ NLP       F     +  + PT+V  I    G  +   P  F    +  +    
Sbjct: 885  LNDDDNLPTQELYYVFDKFILTSGKPPTIVCSICKKDGHSKNDCPEDFRKIDLKPLPPMT 944

Query: 134  PPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFP 193
              FREI      ++      D+LS         C +Q      +E     L++ IQ  + 
Sbjct: 945  NRFREIL-----DLVCKRCFDELSPP-------CSEQ----HNREQILIGLEKFIQKEYD 988

Query: 194  Q-SRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSG 252
            + +RL L GSS NGFG R SD D+C+ ++      ++N K    ++  ++ +H      G
Sbjct: 989  EKARLCLFGSSKNGFGFRDSDLDICMTLEGHENAEKLNCKEIIENLAKILKRH-----PG 1043

Query: 253  YIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIK 312
                  +  AKVPIVKF  + S +E D+++ N +   NT +L TYA ++ RV+ L   +K
Sbjct: 1044 LRNILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMK 1103

Query: 313  KWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP--------AI 364
             +A    I DASRG+LSSY+ +LMVL++LQ    P++P LQ+I+     P        A 
Sbjct: 1104 VFAKRCDIGDASRGSLSSYAYILMVLYFLQQRKPPVIPVLQEIFDGKQIPQRMVDGWNAF 1163

Query: 365  QLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIE 424
                  +    +P  L KN  +LG+L LG L++Y  EFD+   +IS+R+ K +   +  +
Sbjct: 1164 FFDKTEELKKRLPS-LGKNTESLGELWLGLLRFYTEEFDFKEYVISIRQKKLLTTFEK-Q 1221

Query: 425  WRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFL 459
            W +K I +E+PFD  +   A   ++  + I   F+
Sbjct: 1222 WTSKCIAIEDPFDLNHNLGAGVSRKMTNFIMKAFI 1256



 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 88/357 (24%), Positives = 145/357 (40%), Gaps = 65/357 (18%)

Query: 156 LSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGD 215
           LS  ++EL +       DL+ ++    ++ + I    P+  L L GSSL  F  +SSD +
Sbjct: 355 LSVAVIELAKEHGITDDDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVN 414

Query: 216 LCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSC 275
           +   +K  P   ++N       +L ++ K+       Y++      AKVP+V  RD+ S 
Sbjct: 415 ID--IKFPP---KMNHPDLLIKVLGILKKNVL-----YVDVESDFHAKVPVVVCRDRKSG 464

Query: 276 VEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVL 335
           +   ++  N +    T LL     +E    PLVL  + WA    I+  + G + SY   L
Sbjct: 465 LLCRVSAGNDMACLTTDLLTALGKIEPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFAL 524

Query: 336 MVLHYLQTLPEPILPSLQKIYPESFSPA----IQLHLVHQA-----PCNVPPYLSK---- 382
           MV+ +LQ    P+LP L   + E F P      QL  + +       CN      K    
Sbjct: 525 MVMFFLQQRKPPLLPCLLGSWIEGFDPKRMDDFQLKGIVEEKFVKWECNSSSATEKNSIA 584

Query: 383 --------------------NESN--------------------LGDLLLGFLKYYATEF 402
                               N+SN                    LG L L  LK+Y  +F
Sbjct: 585 EENKAKADQPKDDTKKTETDNQSNAMKEKHGKSPLALETPNRVSLGQLWLELLKFYTLDF 644

Query: 403 DWNSQMISVREAKAIPRPDGIEWRNKYICVEEPFD-GTNTARAVHEKQKFDMIKDQF 458
                +I VR    + R +   W  + I +E+PF    N AR+++ +  ++ + ++F
Sbjct: 645 ALEEYVICVRIQDILTR-ENKNWPKRRIAIEDPFSVKRNVARSLNSQLVYEYVVERF 700


>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
            sapiens]
          Length = 1644

 Score =  151 bits (382), Expect = 1e-36
 Identities = 119/395 (30%), Positives = 191/395 (48%), Gaps = 36/395 (9%)

Query: 78   LSDEKNLPLDGKRQRFH----SPHQEPTVVNQIVPLSGERRYSMPPLFHTHYVPDIVRCV 133
            L+D+ NLP       F     +  + PT+V  I    G  +   P  F    +  +    
Sbjct: 885  LNDDDNLPTQELYYVFDKFILTSGKPPTIVCSICKKDGHSKNDCPEDFRKIDLKPLPPMT 944

Query: 134  PPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFP 193
              FREI      ++      D+LS         C +Q      +E     L++ IQ  + 
Sbjct: 945  NRFREIL-----DLVCKRCFDELSPP-------CSEQ----HNREQILIGLEKFIQKEYD 988

Query: 194  Q-SRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSG 252
            + +RL L GSS NGFG R SD D+C+ ++      ++N K    ++  ++ +H      G
Sbjct: 989  EKARLCLFGSSKNGFGFRDSDLDICMTLEGHENAEKLNCKEIIENLAKILKRH-----PG 1043

Query: 253  YIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIK 312
                  +  AKVPIVKF  + S +E D+++ N +   NT +L TYA ++ RV+ L   +K
Sbjct: 1044 LRNILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMK 1103

Query: 313  KWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP--------AI 364
             +A    I DASRG+LSSY+ +LMVL++LQ    P++P LQ+I+     P        A 
Sbjct: 1104 VFAKRCDIGDASRGSLSSYAYILMVLYFLQQRKPPVIPVLQEIFDGKQIPQRMVDGWNAF 1163

Query: 365  QLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIE 424
                  +    +P  L KN  +LG+L LG L++Y  EFD+   +IS+R+ K +   +  +
Sbjct: 1164 FFDKTEELKKRLPS-LGKNTESLGELWLGLLRFYTEEFDFKEYVISIRQKKLLTTFEK-Q 1221

Query: 425  WRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFL 459
            W +K I +E+PFD  +   A   ++  + I   F+
Sbjct: 1222 WTSKCIAIEDPFDLNHNLGAGVSRKMTNFIMKAFI 1256



 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 88/357 (24%), Positives = 145/357 (40%), Gaps = 65/357 (18%)

Query: 156 LSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGD 215
           LS  ++EL +       DL+ ++    ++ + I    P+  L L GSSL  F  +SSD +
Sbjct: 355 LSVAVIELAKEHGITDDDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVN 414

Query: 216 LCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSC 275
           +   +K  P   ++N       +L ++ K+       Y++      AKVP+V  RD+ S 
Sbjct: 415 ID--IKFPP---KMNHPDLLIKVLGILKKNVL-----YVDVESDFHAKVPVVVCRDRKSG 464

Query: 276 VEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVL 335
           +   ++  N +    T LL     +E    PLVL  + WA    I+  + G + SY   L
Sbjct: 465 LLCRVSAGNDMACLTTDLLTALGKIEPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFAL 524

Query: 336 MVLHYLQTLPEPILPSLQKIYPESFSPA----IQLHLVHQA-----PCNVPPYLSK---- 382
           MV+ +LQ    P+LP L   + E F P      QL  + +       CN      K    
Sbjct: 525 MVMFFLQQRKPPLLPCLLGSWIEGFDPKRMDDFQLKGIVEEKFVKWECNSSSATEKNSIA 584

Query: 383 --------------------NESN--------------------LGDLLLGFLKYYATEF 402
                               N+SN                    LG L L  LK+Y  +F
Sbjct: 585 EENKAKADQPKDDTKKTETDNQSNAMKEKHGKSPLALETPNRVSLGQLWLELLKFYTLDF 644

Query: 403 DWNSQMISVREAKAIPRPDGIEWRNKYICVEEPFD-GTNTARAVHEKQKFDMIKDQF 458
                +I VR    + R +   W  + I +E+PF    N AR+++ +  ++ + ++F
Sbjct: 645 ALEEYVICVRIQDILTR-ENKNWPKRRIAIEDPFSVKRNVARSLNSQLVYEYVVERF 700


>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
            sapiens]
          Length = 1640

 Score =  151 bits (382), Expect = 1e-36
 Identities = 119/395 (30%), Positives = 191/395 (48%), Gaps = 36/395 (9%)

Query: 78   LSDEKNLPLDGKRQRFH----SPHQEPTVVNQIVPLSGERRYSMPPLFHTHYVPDIVRCV 133
            L+D+ NLP       F     +  + PT+V  I    G  +   P  F    +  +    
Sbjct: 885  LNDDDNLPTQELYYVFDKFILTSGKPPTIVCSICKKDGHSKNDCPEDFRKIDLKPLPPMT 944

Query: 134  PPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFP 193
              FREI      ++      D+LS         C +Q      +E     L++ IQ  + 
Sbjct: 945  NRFREIL-----DLVCKRCFDELSPP-------CSEQ----HNREQILIGLEKFIQKEYD 988

Query: 194  Q-SRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSG 252
            + +RL L GSS NGFG R SD D+C+ ++      ++N K    ++  ++ +H      G
Sbjct: 989  EKARLCLFGSSKNGFGFRDSDLDICMTLEGHENAEKLNCKEIIENLAKILKRH-----PG 1043

Query: 253  YIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIK 312
                  +  AKVPIVKF  + S +E D+++ N +   NT +L TYA ++ RV+ L   +K
Sbjct: 1044 LRNILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMK 1103

Query: 313  KWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP--------AI 364
             +A    I DASRG+LSSY+ +LMVL++LQ    P++P LQ+I+     P        A 
Sbjct: 1104 VFAKRCDIGDASRGSLSSYAYILMVLYFLQQRKPPVIPVLQEIFDGKQIPQRMVDGWNAF 1163

Query: 365  QLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIE 424
                  +    +P  L KN  +LG+L LG L++Y  EFD+   +IS+R+ K +   +  +
Sbjct: 1164 FFDKTEELKKRLPS-LGKNTESLGELWLGLLRFYTEEFDFKEYVISIRQKKLLTTFEK-Q 1221

Query: 425  WRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFL 459
            W +K I +E+PFD  +   A   ++  + I   F+
Sbjct: 1222 WTSKCIAIEDPFDLNHNLGAGVSRKMTNFIMKAFI 1256



 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 88/357 (24%), Positives = 145/357 (40%), Gaps = 65/357 (18%)

Query: 156 LSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGD 215
           LS  ++EL +       DL+ ++    ++ + I    P+  L L GSSL  F  +SSD +
Sbjct: 355 LSVAVIELAKEHGITDDDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVN 414

Query: 216 LCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSC 275
           +   +K  P   ++N       +L ++ K+       Y++      AKVP+V  RD+ S 
Sbjct: 415 ID--IKFPP---KMNHPDLLIKVLGILKKNVL-----YVDVESDFHAKVPVVVCRDRKSG 464

Query: 276 VEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVL 335
           +   ++  N +    T LL     +E    PLVL  + WA    I+  + G + SY   L
Sbjct: 465 LLCRVSAGNDMACLTTDLLTALGKIEPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFAL 524

Query: 336 MVLHYLQTLPEPILPSLQKIYPESFSPA----IQLHLVHQA-----PCNVPPYLSK---- 382
           MV+ +LQ    P+LP L   + E F P      QL  + +       CN      K    
Sbjct: 525 MVMFFLQQRKPPLLPCLLGSWIEGFDPKRMDDFQLKGIVEEKFVKWECNSSSATEKNSIA 584

Query: 383 --------------------NESN--------------------LGDLLLGFLKYYATEF 402
                               N+SN                    LG L L  LK+Y  +F
Sbjct: 585 EENKAKADQPKDDTKKTETDNQSNAMKEKHGKSPLALETPNRVSLGQLWLELLKFYTLDF 644

Query: 403 DWNSQMISVREAKAIPRPDGIEWRNKYICVEEPFD-GTNTARAVHEKQKFDMIKDQF 458
                +I VR    + R +   W  + I +E+PF    N AR+++ +  ++ + ++F
Sbjct: 645 ALEEYVICVRIQDILTR-ENKNWPKRRIAIEDPFSVKRNVARSLNSQLVYEYVVERF 700


>gi|190194365 PAP associated domain containing 1 [Homo sapiens]
          Length = 582

 Score = 85.9 bits (211), Expect = 8e-17
 Identities = 76/319 (23%), Positives = 148/319 (46%), Gaps = 31/319 (9%)

Query: 154 DKLSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSD 213
           + +  Q+  L +  Q    + K + L  + ++      FP   +   GSS+N FG    D
Sbjct: 184 ESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCD 243

Query: 214 GDLCLVVKEEPCF------------FQV----NQKTEARHILTLVHKHFCTRLSGYIERP 257
            D+ L + E                FQV    +++   + IL+++ +       G +   
Sbjct: 244 LDMFLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQ 303

Query: 258 QLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASH 317
           +++ A+ P+V+F  + S  + DL  NN + + ++ LL  Y  L++RVR LV  ++ WA  
Sbjct: 304 KILNARCPLVRFSHQASGFQCDLTTNNRIALTSSELLYIYGALDSRVRALVFSVRCWARA 363

Query: 318 HQINDASRGT-LSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSPAIQLHLVHQAPCNV 376
           H +  +  G  ++++SL +MV+ +LQ    PILP+L  +  ++ + A    ++    C  
Sbjct: 364 HSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSL--KTLADAEDKCVIEGNNCTF 421

Query: 377 PPYLSK-----NESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIEWRNKYIC 431
              LS+     N   L  LL  F +Y+   F ++   I++R+ +   +PD     +  + 
Sbjct: 422 VRDLSRIKPSQNTETLELLLKEFFEYFG-NFAFDKNSINIRQGREQNKPD-----SSPLY 475

Query: 432 VEEPFD-GTNTARAVHEKQ 449
           ++ PF+   N ++ V + Q
Sbjct: 476 IQNPFETSLNISKNVSQSQ 494


>gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific
           [Homo sapiens]
          Length = 912

 Score = 72.4 bits (176), Expect = 9e-13
 Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 15/225 (6%)

Query: 231 QKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRN 290
           +K E   +L LV       + G      +  A+ P+VKF  + S +  D++++N + + N
Sbjct: 371 EKAEGAAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALHN 430

Query: 291 TFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILP 350
           +  L   + L+ RVRPLV  ++ WA    ++  S   LS+Y+L L+V+++LQT   P+LP
Sbjct: 431 SRFLSLCSELDGRVRPLVYTLRCWAQGRGLS-GSGPLLSNYALTLLVIYFLQTRDPPVLP 489

Query: 351 SLQKIYPESFSPAIQLHLVHQAPCNVPPYLSK-----NESNLGDLLLGFLKYYATEFDWN 405
           ++ ++  +      Q+  V    C+ P   S+     N   L  LL  F    +  +D  
Sbjct: 490 TVSQL-TQKAGEGEQVE-VDGWDCSFPRDASRLEPSINVEPLSSLLAQFFSCVSC-WDLR 546

Query: 406 SQMISVREAKAIPRPDGIE---W---RNKYICVEEPFDGTNTARA 444
             ++S+RE +A+P   G+    W   R   + +++PFD ++   A
Sbjct: 547 GSLLSLREGQALPVAGGLPSNLWEGLRLGPLNLQDPFDLSHNVAA 591


>gi|5902142 DNA polymerase sigma [Homo sapiens]
          Length = 542

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 53/281 (18%)

Query: 183 QLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLV 242
           +++  ++ L+P + + + GS   G    +SD DL +  K E    Q+ ++   +H     
Sbjct: 17  RIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKH----- 71

Query: 243 HKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLEN 302
                  ++       L +A VPI+K  D+ + V+ D++ N   G+R    ++ Y    +
Sbjct: 72  ------NVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYS 125

Query: 303 RVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP 362
            +  L+LV+K++     +N+   G +SSYSL+LM + +LQ                   P
Sbjct: 126 LLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ-----------------LHP 168

Query: 363 AIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDG 422
            I                 + + NLG LL+ F + Y   F++    I ++E  A    + 
Sbjct: 169 RIDAR--------------RADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEE 214

Query: 423 I------EWRNKYICVEEPF-----DGTNTARAVHEKQKFD 452
           I       +R   +C+E+P       G ++  A+  KQ FD
Sbjct: 215 IMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFD 255


>gi|94536832 PAP associated domain containing 5 isoform b [Homo
           sapiens]
          Length = 442

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 53/281 (18%)

Query: 183 QLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLV 242
           +++  I+ L+P + + + GS   G    +SD DL +  K E       ++   +H     
Sbjct: 17  RIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKH----- 71

Query: 243 HKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLEN 302
                 +++       L +A VPI+K  D  + V+ D++ N   G+R   L++ +     
Sbjct: 72  ------KVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYP 125

Query: 303 RVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP 362
            +  LVLV+K++     +N+   G + SYSL LM + +LQ  P                 
Sbjct: 126 VLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHP----------------- 168

Query: 363 AIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDG 422
                   +  C +P       +N G LL+ F + Y   F++    I +++  +    D 
Sbjct: 169 -------REDAC-IP------NTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDE 214

Query: 423 IE------WRNKYICVEEPFD-----GTNTARAVHEKQKFD 452
           ++      +R   + +E+P       G ++  A+  KQ FD
Sbjct: 215 VQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFD 255


>gi|94536834 PAP associated domain containing 5 isoform a [Homo
           sapiens]
          Length = 489

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 53/281 (18%)

Query: 183 QLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLV 242
           +++  I+ L+P + + + GS   G    +SD DL +  K E       ++   +H     
Sbjct: 17  RIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKH----- 71

Query: 243 HKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLEN 302
                 +++       L +A VPI+K  D  + V+ D++ N   G+R   L++ +     
Sbjct: 72  ------KVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYP 125

Query: 303 RVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP 362
            +  LVLV+K++     +N+   G + SYSL LM + +LQ  P                 
Sbjct: 126 VLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHP----------------- 168

Query: 363 AIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDG 422
                   +  C +P       +N G LL+ F + Y   F++    I +++  +    D 
Sbjct: 169 -------REDAC-IP------NTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDE 214

Query: 423 IE------WRNKYICVEEPFD-----GTNTARAVHEKQKFD 452
           ++      +R   + +E+P       G ++  A+  KQ FD
Sbjct: 215 VQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFD 255


>gi|27886520 nuclear factor of activated T-cells 5 isoform a [Homo
            sapiens]
          Length = 1455

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 15   NHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN-VSPIQTSASPLFR 73
            ++Q   N F+ + ++ S Q     Q    N    +   +  L  GN +     S + LF 
Sbjct: 940  DNQPQVNLFSSTKSMMSVQNSGTQQQG--NGLFQQGNEMMSLQSGNFLQQSSHSQAQLFH 997

Query: 74   GRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPLFHT 123
             +  ++D +NL  + +   FHSP+  P V +Q    S E+    PP+FH+
Sbjct: 998  PQNPIADAQNLSQETQGSLFHSPN--PIVHSQTSTTSSEQ--MQPPMFHS 1043


>gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo
            sapiens]
          Length = 1531

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 15   NHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN-VSPIQTSASPLFR 73
            ++Q   N F+ + ++ S Q     Q    N    +   +  L  GN +     S + LF 
Sbjct: 1016 DNQPQVNLFSSTKSMMSVQNSGTQQQG--NGLFQQGNEMMSLQSGNFLQQSSHSQAQLFH 1073

Query: 74   GRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPLFHT 123
             +  ++D +NL  + +   FHSP+  P V +Q    S E+    PP+FH+
Sbjct: 1074 PQNPIADAQNLSQETQGSLFHSPN--PIVHSQTSTTSSEQ--MQPPMFHS 1119


>gi|164419746 nuclear factor of activated T-cells 5 isoform d [Homo
            sapiens]
          Length = 1548

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 15   NHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN-VSPIQTSASPLFR 73
            ++Q   N F+ + ++ S Q     Q    N    +   +  L  GN +     S + LF 
Sbjct: 1033 DNQPQVNLFSSTKSMMSVQNSGTQQQG--NGLFQQGNEMMSLQSGNFLQQSSHSQAQLFH 1090

Query: 74   GRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPLFHT 123
             +  ++D +NL  + +   FHSP+  P V +Q    S E+    PP+FH+
Sbjct: 1091 PQNPIADAQNLSQETQGSLFHSPN--PIVHSQTSTTSSEQ--MQPPMFHS 1136


>gi|164419744 nuclear factor of activated T-cells 5 isoform b [Homo
            sapiens]
          Length = 1549

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 15   NHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN-VSPIQTSASPLFR 73
            ++Q   N F+ + ++ S Q     Q    N    +   +  L  GN +     S + LF 
Sbjct: 1034 DNQPQVNLFSSTKSMMSVQNSGTQQQG--NGLFQQGNEMMSLQSGNFLQQSSHSQAQLFH 1091

Query: 74   GRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPLFHT 123
             +  ++D +NL  + +   FHSP+  P V +Q    S E+    PP+FH+
Sbjct: 1092 PQNPIADAQNLSQETQGSLFHSPN--PIVHSQTSTTSSEQ--MQPPMFHS 1137


>gi|27886524 nuclear factor of activated T-cells 5 isoform a [Homo
            sapiens]
          Length = 1455

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 15   NHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN-VSPIQTSASPLFR 73
            ++Q   N F+ + ++ S Q     Q    N    +   +  L  GN +     S + LF 
Sbjct: 940  DNQPQVNLFSSTKSMMSVQNSGTQQQG--NGLFQQGNEMMSLQSGNFLQQSSHSQAQLFH 997

Query: 74   GRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPLFHT 123
             +  ++D +NL  + +   FHSP+  P V +Q    S E+    PP+FH+
Sbjct: 998  PQNPIADAQNLSQETQGSLFHSPN--PIVHSQTSTTSSEQ--MQPPMFHS 1043


>gi|41152070 zinc finger protein 75 [Homo sapiens]
          Length = 510

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 23/141 (16%)

Query: 334 VLMVLHYLQTLPEPILPSLQKIYPESFSPAIQL-HLVHQAPCNVPPYLSKNESNLGDLLL 392
           +L++  +L  LP+     +QK +P++   A+ L   + + P      ++ +E     +LL
Sbjct: 91  MLVLEQFLSILPKETQNWVQKHHPQNVKQALVLVEFLQREPDGTKNEVTAHELGKEAVLL 150

Query: 393 GFLKYYATEFDWNSQMISVREAKAIPRPDGI---EWRNKYICVEEPFDGTNT-------- 441
           G     A  F W           A P+P G+   E+ N Y  ++E   G NT        
Sbjct: 151 GGTAV-APGFKWKP---------AEPQPMGVFQKEYWNTYRVLQEQL-GWNTHKETQPVY 199

Query: 442 ARAVHEKQKFDMIKDQFLKSW 462
            RAVH++Q   + + + +K W
Sbjct: 200 ERAVHDQQMLALSEQKRIKHW 220


>gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]
          Length = 1505

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 10/126 (7%)

Query: 79   SDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPLFHTHYVPDIVRCVPPFRE 138
            S    L L G   R  +P   P   + IVP+S   + S+PPL    Y       V  ++E
Sbjct: 890  SQSSELSLTGA-SRSETPQNSPLPSSPIVPMSKPTKPSVPPLTPEQYE------VYMYQE 942

Query: 139  IAFLE-PREITLPEAKDKLSQQIL--ELFETCQQQISDLKKKELCRTQLQREIQLLFPQS 195
            +  +E  R++    AK+ + Q+I   ++    Q  +SD+  +    ++L ++ +  F + 
Sbjct: 943  VDTIELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRM 1002

Query: 196  RLFLVG 201
            +L+L G
Sbjct: 1003 QLWLNG 1008


>gi|18765711 four jointed box 1 [Homo sapiens]
          Length = 437

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 3/101 (2%)

Query: 254 IERPQLIRAKVPIVKFRDKV-SCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVL--V 310
           +ER    R+   + +F D   +CV + +N   I G   ++ L     L+  V PL L  V
Sbjct: 156 LERGGCGRSSNRLARFADGTRACVRYGINPEQIQGEALSYYLARLLGLQRHVPPLALARV 215

Query: 311 IKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPS 351
             + A   Q+ +  R    +   V+ +  +L  L + ++P+
Sbjct: 216 EARGAQWAQVQEELRAAHWTEGSVVSLTRWLPNLTDVVVPA 256


>gi|148806891 hypothetical protein LOC54906 [Homo sapiens]
          Length = 2430

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 81   EKNLPLDGKRQ--RFHSPHQEPTVVNQIVPLSGERRYSMPPLFHTHYVPDIVRCVPPFRE 138
            +K++P DG      FH+ +QE    +  VP       S+PP   T  V    +CVPP+ +
Sbjct: 1858 KKDVPTDGYESSLNFHNNNQEDWGCSSWVP---GMETSLPPGHWTAAVKKEEKCVPPYVQ 1914

Query: 139  I 139
            I
Sbjct: 1915 I 1915


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,239,547
Number of Sequences: 37866
Number of extensions: 880635
Number of successful extensions: 2067
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2026
Number of HSP's gapped (non-prelim): 31
length of query: 484
length of database: 18,247,518
effective HSP length: 106
effective length of query: 378
effective length of database: 14,233,722
effective search space: 5380346916
effective search space used: 5380346916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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