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Search of human proteins with 167555095
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|167555095 PAP associated domain containing 4 [Homo sapiens]
(484 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|167555099 PAP associated domain containing 4 [Homo sapiens] 984 0.0
gi|167555097 PAP associated domain containing 4 [Homo sapiens] 984 0.0
gi|167555095 PAP associated domain containing 4 [Homo sapiens] 984 0.0
gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens] 158 9e-39
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho... 151 1e-36
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho... 151 1e-36
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho... 151 1e-36
gi|190194365 PAP associated domain containing 1 [Homo sapiens] 86 8e-17
gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific ... 72 9e-13
gi|5902142 DNA polymerase sigma [Homo sapiens] 68 2e-11
gi|94536832 PAP associated domain containing 5 isoform b [Homo s... 59 1e-08
gi|94536834 PAP associated domain containing 5 isoform a [Homo s... 59 1e-08
gi|27886520 nuclear factor of activated T-cells 5 isoform a [Hom... 32 0.99
gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo... 32 0.99
gi|164419746 nuclear factor of activated T-cells 5 isoform d [Ho... 32 0.99
gi|164419744 nuclear factor of activated T-cells 5 isoform b [Ho... 32 0.99
gi|27886524 nuclear factor of activated T-cells 5 isoform a [Hom... 32 0.99
gi|41152070 zinc finger protein 75 [Homo sapiens] 32 1.3
gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens] 31 2.9
gi|18765711 four jointed box 1 [Homo sapiens] 30 6.4
gi|148806891 hypothetical protein LOC54906 [Homo sapiens] 29 8.4
>gi|167555099 PAP associated domain containing 4 [Homo sapiens]
Length = 484
Score = 984 bits (2544), Expect = 0.0
Identities = 484/484 (100%), Positives = 484/484 (100%)
Query: 1 MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN 60
MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN
Sbjct: 1 MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN 60
Query: 61 VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL 120
VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL
Sbjct: 61 VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL 120
Query: 121 FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC 180
FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC
Sbjct: 121 FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC 180
Query: 181 RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT 240
RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT
Sbjct: 181 RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT 240
Query: 241 LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL 300
LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL
Sbjct: 241 LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL 300
Query: 301 ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF 360
ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF
Sbjct: 301 ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF 360
Query: 361 SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP 420
SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP
Sbjct: 361 SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP 420
Query: 421 DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA 480
DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA
Sbjct: 421 DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA 480
Query: 481 VLKR 484
VLKR
Sbjct: 481 VLKR 484
>gi|167555097 PAP associated domain containing 4 [Homo sapiens]
Length = 484
Score = 984 bits (2544), Expect = 0.0
Identities = 484/484 (100%), Positives = 484/484 (100%)
Query: 1 MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN 60
MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN
Sbjct: 1 MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN 60
Query: 61 VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL 120
VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL
Sbjct: 61 VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL 120
Query: 121 FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC 180
FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC
Sbjct: 121 FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC 180
Query: 181 RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT 240
RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT
Sbjct: 181 RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT 240
Query: 241 LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL 300
LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL
Sbjct: 241 LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL 300
Query: 301 ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF 360
ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF
Sbjct: 301 ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF 360
Query: 361 SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP 420
SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP
Sbjct: 361 SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP 420
Query: 421 DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA 480
DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA
Sbjct: 421 DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA 480
Query: 481 VLKR 484
VLKR
Sbjct: 481 VLKR 484
>gi|167555095 PAP associated domain containing 4 [Homo sapiens]
Length = 484
Score = 984 bits (2544), Expect = 0.0
Identities = 484/484 (100%), Positives = 484/484 (100%)
Query: 1 MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN 60
MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN
Sbjct: 1 MFPNSILGRPPFTPNHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN 60
Query: 61 VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL 120
VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL
Sbjct: 61 VSPIQTSASPLFRGRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPL 120
Query: 121 FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC 180
FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC
Sbjct: 121 FHTHYVPDIVRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELC 180
Query: 181 RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT 240
RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT
Sbjct: 181 RTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILT 240
Query: 241 LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL 300
LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL
Sbjct: 241 LVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL 300
Query: 301 ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF 360
ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF
Sbjct: 301 ENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESF 360
Query: 361 SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP 420
SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP
Sbjct: 361 SPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRP 420
Query: 421 DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA 480
DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA
Sbjct: 421 DGIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWHRLKNKRDLNSILPVRAA 480
Query: 481 VLKR 484
VLKR
Sbjct: 481 VLKR 484
>gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]
Length = 1495
Score = 158 bits (400), Expect = 9e-39
Identities = 121/398 (30%), Positives = 193/398 (48%), Gaps = 37/398 (9%)
Query: 76 KRLSDEKNLPLDGK------RQRFHSPHQEPTVVNQIVPLSGERRYSMPPLFHTHYVPDI 129
+ + +EKN P+D + + + PTVV + G H D
Sbjct: 931 ENVCEEKNSPVDQSDFFYEFSKLIFTKGKSPTVVCSLCKREG------------HLKKD- 977
Query: 130 VRCVPPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELCRTQLQREIQ 189
C F+ I LEP P+ + L Q ++ ++ I + + +E R L+ I+
Sbjct: 978 --CPEDFKRIQ-LEPLPPLTPKFLNILDQVCIQCYKDFSPTIIEDQAREHIRQNLESFIR 1034
Query: 190 LLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTR 249
FP ++L L GSS NGFG + SD D+C+ + ++ + ++ KH
Sbjct: 1035 QDFPGTKLSLFGSSKNGFGFKQSDLDVCMTINGLETAEGLDCVRTIEELARVLRKH---- 1090
Query: 250 LSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVL 309
SG + AKVPIVKF S +E D+++ N + + NT LL Y+ ++ RV+ L
Sbjct: 1091 -SGLRNILPITTAKVPIVKFFHLRSGLEVDISLYNTLALHNTRLLSAYSAIDPRVKYLCY 1149
Query: 310 VIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIY-----PESFSPAI 364
+K + I DASRG+LSSY+ LMVL++LQ P++P LQ+IY PE F
Sbjct: 1150 TMKVFTKMCDIGDASRGSLSSYAYTLMVLYFLQQRNPPVIPVLQEIYKGEKKPEIFVDGW 1209
Query: 365 QLHLVHQAPCNVPPYLS---KNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPD 421
++ Q +P Y S KN ++G L LG L++Y EFD+ +IS+R K++
Sbjct: 1210 NIYFFDQID-ELPTYWSECGKNTESVGQLWLGLLRFYTEEFDFKEHVISIRR-KSLLTTF 1267
Query: 422 GIEWRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFL 459
+W +KYI +E+PFD + A ++ + I F+
Sbjct: 1268 KKQWTSKYIVIEDPFDLNHNLGAGLSRKMTNFIMKAFI 1305
Score = 68.6 bits (166), Expect = 1e-11
Identities = 78/317 (24%), Positives = 135/317 (42%), Gaps = 57/317 (17%)
Query: 181 RTQLQREIQLLF----PQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEAR 236
R +++R ++ +F P L L GSS + G ++SD ++ + Q
Sbjct: 316 RLEIKRIMENVFQHKLPDCSLRLYGSSCSRLGFKNSDVNIDI---------QFPAIMSQP 366
Query: 237 HILTLVHKHFCTRLS-GYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLR 295
+L LV + C + S +I+ A+VP+V R+K S + ++ N T L
Sbjct: 367 DVLLLVQE--CLKNSDSFIDVDADFHARVPVVVCREKQSGLLCKVSAGNENACLTTKHLT 424
Query: 296 TYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKI 355
LE ++ PLV+ + WA I+ G L Y LM + +LQ EP+LP
Sbjct: 425 ALGKLEPKLVPLVIAFRYWAKLCSIDRPEEGGLPPYVFALMAIFFLQQRKEPLLPVYLGS 484
Query: 356 YPESFSPA---------IQLHLV----------------HQAPCNVPPYLSKNESNL--- 387
+ E FS + I+ +V +AP P + + + +L
Sbjct: 485 WIEGFSLSKLGNFNLQDIEKDVVIWEHTDSAAGDTGITKEEAPRETP--IKRGQVSLILD 542
Query: 388 ---------GDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIEWRNKYICVEEPFD- 437
G L + L++YA EF+ +IS+R + + R + +W K I +E+P+
Sbjct: 543 VKHQPSVPVGQLWVELLRFYALEFNLADLVISIRVKELVSR-ELKDWPKKRIAIEDPYSV 601
Query: 438 GTNTARAVHEKQKFDMI 454
N AR ++ + F+ I
Sbjct: 602 KRNVARTLNSQPVFEYI 618
>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
sapiens]
Length = 1645
Score = 151 bits (382), Expect = 1e-36
Identities = 119/395 (30%), Positives = 191/395 (48%), Gaps = 36/395 (9%)
Query: 78 LSDEKNLPLDGKRQRFH----SPHQEPTVVNQIVPLSGERRYSMPPLFHTHYVPDIVRCV 133
L+D+ NLP F + + PT+V I G + P F + +
Sbjct: 885 LNDDDNLPTQELYYVFDKFILTSGKPPTIVCSICKKDGHSKNDCPEDFRKIDLKPLPPMT 944
Query: 134 PPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFP 193
FREI ++ D+LS C +Q +E L++ IQ +
Sbjct: 945 NRFREIL-----DLVCKRCFDELSPP-------CSEQ----HNREQILIGLEKFIQKEYD 988
Query: 194 Q-SRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSG 252
+ +RL L GSS NGFG R SD D+C+ ++ ++N K ++ ++ +H G
Sbjct: 989 EKARLCLFGSSKNGFGFRDSDLDICMTLEGHENAEKLNCKEIIENLAKILKRH-----PG 1043
Query: 253 YIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIK 312
+ AKVPIVKF + S +E D+++ N + NT +L TYA ++ RV+ L +K
Sbjct: 1044 LRNILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMK 1103
Query: 313 KWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP--------AI 364
+A I DASRG+LSSY+ +LMVL++LQ P++P LQ+I+ P A
Sbjct: 1104 VFAKRCDIGDASRGSLSSYAYILMVLYFLQQRKPPVIPVLQEIFDGKQIPQRMVDGWNAF 1163
Query: 365 QLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIE 424
+ +P L KN +LG+L LG L++Y EFD+ +IS+R+ K + + +
Sbjct: 1164 FFDKTEELKKRLPS-LGKNTESLGELWLGLLRFYTEEFDFKEYVISIRQKKLLTTFEK-Q 1221
Query: 425 WRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFL 459
W +K I +E+PFD + A ++ + I F+
Sbjct: 1222 WTSKCIAIEDPFDLNHNLGAGVSRKMTNFIMKAFI 1256
Score = 82.0 bits (201), Expect = 1e-15
Identities = 88/357 (24%), Positives = 145/357 (40%), Gaps = 65/357 (18%)
Query: 156 LSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGD 215
LS ++EL + DL+ ++ ++ + I P+ L L GSSL F +SSD +
Sbjct: 355 LSVAVIELAKEHGITDDDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVN 414
Query: 216 LCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSC 275
+ +K P ++N +L ++ K+ Y++ AKVP+V RD+ S
Sbjct: 415 ID--IKFPP---KMNHPDLLIKVLGILKKNVL-----YVDVESDFHAKVPVVVCRDRKSG 464
Query: 276 VEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVL 335
+ ++ N + T LL +E PLVL + WA I+ + G + SY L
Sbjct: 465 LLCRVSAGNDMACLTTDLLTALGKIEPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFAL 524
Query: 336 MVLHYLQTLPEPILPSLQKIYPESFSPA----IQLHLVHQA-----PCNVPPYLSK---- 382
MV+ +LQ P+LP L + E F P QL + + CN K
Sbjct: 525 MVMFFLQQRKPPLLPCLLGSWIEGFDPKRMDDFQLKGIVEEKFVKWECNSSSATEKNSIA 584
Query: 383 --------------------NESN--------------------LGDLLLGFLKYYATEF 402
N+SN LG L L LK+Y +F
Sbjct: 585 EENKAKADQPKDDTKKTETDNQSNAMKEKHGKSPLALETPNRVSLGQLWLELLKFYTLDF 644
Query: 403 DWNSQMISVREAKAIPRPDGIEWRNKYICVEEPFD-GTNTARAVHEKQKFDMIKDQF 458
+I VR + R + W + I +E+PF N AR+++ + ++ + ++F
Sbjct: 645 ALEEYVICVRIQDILTR-ENKNWPKRRIAIEDPFSVKRNVARSLNSQLVYEYVVERF 700
>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
sapiens]
Length = 1644
Score = 151 bits (382), Expect = 1e-36
Identities = 119/395 (30%), Positives = 191/395 (48%), Gaps = 36/395 (9%)
Query: 78 LSDEKNLPLDGKRQRFH----SPHQEPTVVNQIVPLSGERRYSMPPLFHTHYVPDIVRCV 133
L+D+ NLP F + + PT+V I G + P F + +
Sbjct: 885 LNDDDNLPTQELYYVFDKFILTSGKPPTIVCSICKKDGHSKNDCPEDFRKIDLKPLPPMT 944
Query: 134 PPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFP 193
FREI ++ D+LS C +Q +E L++ IQ +
Sbjct: 945 NRFREIL-----DLVCKRCFDELSPP-------CSEQ----HNREQILIGLEKFIQKEYD 988
Query: 194 Q-SRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSG 252
+ +RL L GSS NGFG R SD D+C+ ++ ++N K ++ ++ +H G
Sbjct: 989 EKARLCLFGSSKNGFGFRDSDLDICMTLEGHENAEKLNCKEIIENLAKILKRH-----PG 1043
Query: 253 YIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIK 312
+ AKVPIVKF + S +E D+++ N + NT +L TYA ++ RV+ L +K
Sbjct: 1044 LRNILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMK 1103
Query: 313 KWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP--------AI 364
+A I DASRG+LSSY+ +LMVL++LQ P++P LQ+I+ P A
Sbjct: 1104 VFAKRCDIGDASRGSLSSYAYILMVLYFLQQRKPPVIPVLQEIFDGKQIPQRMVDGWNAF 1163
Query: 365 QLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIE 424
+ +P L KN +LG+L LG L++Y EFD+ +IS+R+ K + + +
Sbjct: 1164 FFDKTEELKKRLPS-LGKNTESLGELWLGLLRFYTEEFDFKEYVISIRQKKLLTTFEK-Q 1221
Query: 425 WRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFL 459
W +K I +E+PFD + A ++ + I F+
Sbjct: 1222 WTSKCIAIEDPFDLNHNLGAGVSRKMTNFIMKAFI 1256
Score = 82.0 bits (201), Expect = 1e-15
Identities = 88/357 (24%), Positives = 145/357 (40%), Gaps = 65/357 (18%)
Query: 156 LSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGD 215
LS ++EL + DL+ ++ ++ + I P+ L L GSSL F +SSD +
Sbjct: 355 LSVAVIELAKEHGITDDDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVN 414
Query: 216 LCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSC 275
+ +K P ++N +L ++ K+ Y++ AKVP+V RD+ S
Sbjct: 415 ID--IKFPP---KMNHPDLLIKVLGILKKNVL-----YVDVESDFHAKVPVVVCRDRKSG 464
Query: 276 VEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVL 335
+ ++ N + T LL +E PLVL + WA I+ + G + SY L
Sbjct: 465 LLCRVSAGNDMACLTTDLLTALGKIEPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFAL 524
Query: 336 MVLHYLQTLPEPILPSLQKIYPESFSPA----IQLHLVHQA-----PCNVPPYLSK---- 382
MV+ +LQ P+LP L + E F P QL + + CN K
Sbjct: 525 MVMFFLQQRKPPLLPCLLGSWIEGFDPKRMDDFQLKGIVEEKFVKWECNSSSATEKNSIA 584
Query: 383 --------------------NESN--------------------LGDLLLGFLKYYATEF 402
N+SN LG L L LK+Y +F
Sbjct: 585 EENKAKADQPKDDTKKTETDNQSNAMKEKHGKSPLALETPNRVSLGQLWLELLKFYTLDF 644
Query: 403 DWNSQMISVREAKAIPRPDGIEWRNKYICVEEPFD-GTNTARAVHEKQKFDMIKDQF 458
+I VR + R + W + I +E+PF N AR+++ + ++ + ++F
Sbjct: 645 ALEEYVICVRIQDILTR-ENKNWPKRRIAIEDPFSVKRNVARSLNSQLVYEYVVERF 700
>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
sapiens]
Length = 1640
Score = 151 bits (382), Expect = 1e-36
Identities = 119/395 (30%), Positives = 191/395 (48%), Gaps = 36/395 (9%)
Query: 78 LSDEKNLPLDGKRQRFH----SPHQEPTVVNQIVPLSGERRYSMPPLFHTHYVPDIVRCV 133
L+D+ NLP F + + PT+V I G + P F + +
Sbjct: 885 LNDDDNLPTQELYYVFDKFILTSGKPPTIVCSICKKDGHSKNDCPEDFRKIDLKPLPPMT 944
Query: 134 PPFREIAFLEPREITLPEAKDKLSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFP 193
FREI ++ D+LS C +Q +E L++ IQ +
Sbjct: 945 NRFREIL-----DLVCKRCFDELSPP-------CSEQ----HNREQILIGLEKFIQKEYD 988
Query: 194 Q-SRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSG 252
+ +RL L GSS NGFG R SD D+C+ ++ ++N K ++ ++ +H G
Sbjct: 989 EKARLCLFGSSKNGFGFRDSDLDICMTLEGHENAEKLNCKEIIENLAKILKRH-----PG 1043
Query: 253 YIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIK 312
+ AKVPIVKF + S +E D+++ N + NT +L TYA ++ RV+ L +K
Sbjct: 1044 LRNILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMK 1103
Query: 313 KWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP--------AI 364
+A I DASRG+LSSY+ +LMVL++LQ P++P LQ+I+ P A
Sbjct: 1104 VFAKRCDIGDASRGSLSSYAYILMVLYFLQQRKPPVIPVLQEIFDGKQIPQRMVDGWNAF 1163
Query: 365 QLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIE 424
+ +P L KN +LG+L LG L++Y EFD+ +IS+R+ K + + +
Sbjct: 1164 FFDKTEELKKRLPS-LGKNTESLGELWLGLLRFYTEEFDFKEYVISIRQKKLLTTFEK-Q 1221
Query: 425 WRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFL 459
W +K I +E+PFD + A ++ + I F+
Sbjct: 1222 WTSKCIAIEDPFDLNHNLGAGVSRKMTNFIMKAFI 1256
Score = 82.0 bits (201), Expect = 1e-15
Identities = 88/357 (24%), Positives = 145/357 (40%), Gaps = 65/357 (18%)
Query: 156 LSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGD 215
LS ++EL + DL+ ++ ++ + I P+ L L GSSL F +SSD +
Sbjct: 355 LSVAVIELAKEHGITDDDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVN 414
Query: 216 LCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSC 275
+ +K P ++N +L ++ K+ Y++ AKVP+V RD+ S
Sbjct: 415 ID--IKFPP---KMNHPDLLIKVLGILKKNVL-----YVDVESDFHAKVPVVVCRDRKSG 464
Query: 276 VEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVL 335
+ ++ N + T LL +E PLVL + WA I+ + G + SY L
Sbjct: 465 LLCRVSAGNDMACLTTDLLTALGKIEPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFAL 524
Query: 336 MVLHYLQTLPEPILPSLQKIYPESFSPA----IQLHLVHQA-----PCNVPPYLSK---- 382
MV+ +LQ P+LP L + E F P QL + + CN K
Sbjct: 525 MVMFFLQQRKPPLLPCLLGSWIEGFDPKRMDDFQLKGIVEEKFVKWECNSSSATEKNSIA 584
Query: 383 --------------------NESN--------------------LGDLLLGFLKYYATEF 402
N+SN LG L L LK+Y +F
Sbjct: 585 EENKAKADQPKDDTKKTETDNQSNAMKEKHGKSPLALETPNRVSLGQLWLELLKFYTLDF 644
Query: 403 DWNSQMISVREAKAIPRPDGIEWRNKYICVEEPFD-GTNTARAVHEKQKFDMIKDQF 458
+I VR + R + W + I +E+PF N AR+++ + ++ + ++F
Sbjct: 645 ALEEYVICVRIQDILTR-ENKNWPKRRIAIEDPFSVKRNVARSLNSQLVYEYVVERF 700
>gi|190194365 PAP associated domain containing 1 [Homo sapiens]
Length = 582
Score = 85.9 bits (211), Expect = 8e-17
Identities = 76/319 (23%), Positives = 148/319 (46%), Gaps = 31/319 (9%)
Query: 154 DKLSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSD 213
+ + Q+ L + Q + K + L + ++ FP + GSS+N FG D
Sbjct: 184 ESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCD 243
Query: 214 GDLCLVVKEEPCF------------FQV----NQKTEARHILTLVHKHFCTRLSGYIERP 257
D+ L + E FQV +++ + IL+++ + G +
Sbjct: 244 LDMFLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQ 303
Query: 258 QLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASH 317
+++ A+ P+V+F + S + DL NN + + ++ LL Y L++RVR LV ++ WA
Sbjct: 304 KILNARCPLVRFSHQASGFQCDLTTNNRIALTSSELLYIYGALDSRVRALVFSVRCWARA 363
Query: 318 HQINDASRGT-LSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSPAIQLHLVHQAPCNV 376
H + + G ++++SL +MV+ +LQ PILP+L + ++ + A ++ C
Sbjct: 364 HSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSL--KTLADAEDKCVIEGNNCTF 421
Query: 377 PPYLSK-----NESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDGIEWRNKYIC 431
LS+ N L LL F +Y+ F ++ I++R+ + +PD + +
Sbjct: 422 VRDLSRIKPSQNTETLELLLKEFFEYFG-NFAFDKNSINIRQGREQNKPD-----SSPLY 475
Query: 432 VEEPFD-GTNTARAVHEKQ 449
++ PF+ N ++ V + Q
Sbjct: 476 IQNPFETSLNISKNVSQSQ 494
>gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific
[Homo sapiens]
Length = 912
Score = 72.4 bits (176), Expect = 9e-13
Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 15/225 (6%)
Query: 231 QKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRN 290
+K E +L LV + G + A+ P+VKF + S + D++++N + + N
Sbjct: 371 EKAEGAAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALHN 430
Query: 291 TFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILP 350
+ L + L+ RVRPLV ++ WA ++ S LS+Y+L L+V+++LQT P+LP
Sbjct: 431 SRFLSLCSELDGRVRPLVYTLRCWAQGRGLS-GSGPLLSNYALTLLVIYFLQTRDPPVLP 489
Query: 351 SLQKIYPESFSPAIQLHLVHQAPCNVPPYLSK-----NESNLGDLLLGFLKYYATEFDWN 405
++ ++ + Q+ V C+ P S+ N L LL F + +D
Sbjct: 490 TVSQL-TQKAGEGEQVE-VDGWDCSFPRDASRLEPSINVEPLSSLLAQFFSCVSC-WDLR 546
Query: 406 SQMISVREAKAIPRPDGIE---W---RNKYICVEEPFDGTNTARA 444
++S+RE +A+P G+ W R + +++PFD ++ A
Sbjct: 547 GSLLSLREGQALPVAGGLPSNLWEGLRLGPLNLQDPFDLSHNVAA 591
>gi|5902142 DNA polymerase sigma [Homo sapiens]
Length = 542
Score = 68.2 bits (165), Expect = 2e-11
Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 53/281 (18%)
Query: 183 QLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLV 242
+++ ++ L+P + + + GS G +SD DL + K E Q+ ++ +H
Sbjct: 17 RIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKH----- 71
Query: 243 HKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLEN 302
++ L +A VPI+K D+ + V+ D++ N G+R ++ Y +
Sbjct: 72 ------NVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYS 125
Query: 303 RVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP 362
+ L+LV+K++ +N+ G +SSYSL+LM + +LQ P
Sbjct: 126 LLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ-----------------LHP 168
Query: 363 AIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDG 422
I + + NLG LL+ F + Y F++ I ++E A +
Sbjct: 169 RIDAR--------------RADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEE 214
Query: 423 I------EWRNKYICVEEPF-----DGTNTARAVHEKQKFD 452
I +R +C+E+P G ++ A+ KQ FD
Sbjct: 215 IMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFD 255
>gi|94536832 PAP associated domain containing 5 isoform b [Homo
sapiens]
Length = 442
Score = 58.5 bits (140), Expect = 1e-08
Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 53/281 (18%)
Query: 183 QLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLV 242
+++ I+ L+P + + + GS G +SD DL + K E ++ +H
Sbjct: 17 RIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKH----- 71
Query: 243 HKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLEN 302
+++ L +A VPI+K D + V+ D++ N G+R L++ +
Sbjct: 72 ------KVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYP 125
Query: 303 RVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP 362
+ LVLV+K++ +N+ G + SYSL LM + +LQ P
Sbjct: 126 VLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHP----------------- 168
Query: 363 AIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDG 422
+ C +P +N G LL+ F + Y F++ I +++ + D
Sbjct: 169 -------REDAC-IP------NTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDE 214
Query: 423 IE------WRNKYICVEEPFD-----GTNTARAVHEKQKFD 452
++ +R + +E+P G ++ A+ KQ FD
Sbjct: 215 VQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFD 255
>gi|94536834 PAP associated domain containing 5 isoform a [Homo
sapiens]
Length = 489
Score = 58.5 bits (140), Expect = 1e-08
Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 53/281 (18%)
Query: 183 QLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLV 242
+++ I+ L+P + + + GS G +SD DL + K E ++ +H
Sbjct: 17 RIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKH----- 71
Query: 243 HKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLEN 302
+++ L +A VPI+K D + V+ D++ N G+R L++ +
Sbjct: 72 ------KVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYP 125
Query: 303 RVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP 362
+ LVLV+K++ +N+ G + SYSL LM + +LQ P
Sbjct: 126 VLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHP----------------- 168
Query: 363 AIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDG 422
+ C +P +N G LL+ F + Y F++ I +++ + D
Sbjct: 169 -------REDAC-IP------NTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDE 214
Query: 423 IE------WRNKYICVEEPFD-----GTNTARAVHEKQKFD 452
++ +R + +E+P G ++ A+ KQ FD
Sbjct: 215 VQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFD 255
>gi|27886520 nuclear factor of activated T-cells 5 isoform a [Homo
sapiens]
Length = 1455
Score = 32.3 bits (72), Expect = 0.99
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 15 NHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN-VSPIQTSASPLFR 73
++Q N F+ + ++ S Q Q N + + L GN + S + LF
Sbjct: 940 DNQPQVNLFSSTKSMMSVQNSGTQQQG--NGLFQQGNEMMSLQSGNFLQQSSHSQAQLFH 997
Query: 74 GRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPLFHT 123
+ ++D +NL + + FHSP+ P V +Q S E+ PP+FH+
Sbjct: 998 PQNPIADAQNLSQETQGSLFHSPN--PIVHSQTSTTSSEQ--MQPPMFHS 1043
>gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo
sapiens]
Length = 1531
Score = 32.3 bits (72), Expect = 0.99
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 15 NHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN-VSPIQTSASPLFR 73
++Q N F+ + ++ S Q Q N + + L GN + S + LF
Sbjct: 1016 DNQPQVNLFSSTKSMMSVQNSGTQQQG--NGLFQQGNEMMSLQSGNFLQQSSHSQAQLFH 1073
Query: 74 GRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPLFHT 123
+ ++D +NL + + FHSP+ P V +Q S E+ PP+FH+
Sbjct: 1074 PQNPIADAQNLSQETQGSLFHSPN--PIVHSQTSTTSSEQ--MQPPMFHS 1119
>gi|164419746 nuclear factor of activated T-cells 5 isoform d [Homo
sapiens]
Length = 1548
Score = 32.3 bits (72), Expect = 0.99
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 15 NHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN-VSPIQTSASPLFR 73
++Q N F+ + ++ S Q Q N + + L GN + S + LF
Sbjct: 1033 DNQPQVNLFSSTKSMMSVQNSGTQQQG--NGLFQQGNEMMSLQSGNFLQQSSHSQAQLFH 1090
Query: 74 GRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPLFHT 123
+ ++D +NL + + FHSP+ P V +Q S E+ PP+FH+
Sbjct: 1091 PQNPIADAQNLSQETQGSLFHSPN--PIVHSQTSTTSSEQ--MQPPMFHS 1136
>gi|164419744 nuclear factor of activated T-cells 5 isoform b [Homo
sapiens]
Length = 1549
Score = 32.3 bits (72), Expect = 0.99
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 15 NHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN-VSPIQTSASPLFR 73
++Q N F+ + ++ S Q Q N + + L GN + S + LF
Sbjct: 1034 DNQPQVNLFSSTKSMMSVQNSGTQQQG--NGLFQQGNEMMSLQSGNFLQQSSHSQAQLFH 1091
Query: 74 GRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPLFHT 123
+ ++D +NL + + FHSP+ P V +Q S E+ PP+FH+
Sbjct: 1092 PQNPIADAQNLSQETQGSLFHSPN--PIVHSQTSTTSSEQ--MQPPMFHS 1137
>gi|27886524 nuclear factor of activated T-cells 5 isoform a [Homo
sapiens]
Length = 1455
Score = 32.3 bits (72), Expect = 0.99
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 15 NHQQHNNFFTLSPTVYSHQQLIDAQFNFQNADLSRAVSLQQLTYGN-VSPIQTSASPLFR 73
++Q N F+ + ++ S Q Q N + + L GN + S + LF
Sbjct: 940 DNQPQVNLFSSTKSMMSVQNSGTQQQG--NGLFQQGNEMMSLQSGNFLQQSSHSQAQLFH 997
Query: 74 GRKRLSDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPLFHT 123
+ ++D +NL + + FHSP+ P V +Q S E+ PP+FH+
Sbjct: 998 PQNPIADAQNLSQETQGSLFHSPN--PIVHSQTSTTSSEQ--MQPPMFHS 1043
>gi|41152070 zinc finger protein 75 [Homo sapiens]
Length = 510
Score = 32.0 bits (71), Expect = 1.3
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 334 VLMVLHYLQTLPEPILPSLQKIYPESFSPAIQL-HLVHQAPCNVPPYLSKNESNLGDLLL 392
+L++ +L LP+ +QK +P++ A+ L + + P ++ +E +LL
Sbjct: 91 MLVLEQFLSILPKETQNWVQKHHPQNVKQALVLVEFLQREPDGTKNEVTAHELGKEAVLL 150
Query: 393 GFLKYYATEFDWNSQMISVREAKAIPRPDGI---EWRNKYICVEEPFDGTNT-------- 441
G A F W A P+P G+ E+ N Y ++E G NT
Sbjct: 151 GGTAV-APGFKWKP---------AEPQPMGVFQKEYWNTYRVLQEQL-GWNTHKETQPVY 199
Query: 442 ARAVHEKQKFDMIKDQFLKSW 462
RAVH++Q + + + +K W
Sbjct: 200 ERAVHDQQMLALSEQKRIKHW 220
>gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]
Length = 1505
Score = 30.8 bits (68), Expect = 2.9
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 79 SDEKNLPLDGKRQRFHSPHQEPTVVNQIVPLSGERRYSMPPLFHTHYVPDIVRCVPPFRE 138
S L L G R +P P + IVP+S + S+PPL Y V ++E
Sbjct: 890 SQSSELSLTGA-SRSETPQNSPLPSSPIVPMSKPTKPSVPPLTPEQYE------VYMYQE 942
Query: 139 IAFLE-PREITLPEAKDKLSQQIL--ELFETCQQQISDLKKKELCRTQLQREIQLLFPQS 195
+ +E R++ AK+ + Q+I ++ Q +SD+ + ++L ++ + F +
Sbjct: 943 VDTIELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRM 1002
Query: 196 RLFLVG 201
+L+L G
Sbjct: 1003 QLWLNG 1008
>gi|18765711 four jointed box 1 [Homo sapiens]
Length = 437
Score = 29.6 bits (65), Expect = 6.4
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 254 IERPQLIRAKVPIVKFRDKV-SCVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVL--V 310
+ER R+ + +F D +CV + +N I G ++ L L+ V PL L V
Sbjct: 156 LERGGCGRSSNRLARFADGTRACVRYGINPEQIQGEALSYYLARLLGLQRHVPPLALARV 215
Query: 311 IKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPS 351
+ A Q+ + R + V+ + +L L + ++P+
Sbjct: 216 EARGAQWAQVQEELRAAHWTEGSVVSLTRWLPNLTDVVVPA 256
>gi|148806891 hypothetical protein LOC54906 [Homo sapiens]
Length = 2430
Score = 29.3 bits (64), Expect = 8.4
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 81 EKNLPLDGKRQ--RFHSPHQEPTVVNQIVPLSGERRYSMPPLFHTHYVPDIVRCVPPFRE 138
+K++P DG FH+ +QE + VP S+PP T V +CVPP+ +
Sbjct: 1858 KKDVPTDGYESSLNFHNNNQEDWGCSSWVP---GMETSLPPGHWTAAVKKEEKCVPPYVQ 1914
Query: 139 I 139
I
Sbjct: 1915 I 1915
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,239,547
Number of Sequences: 37866
Number of extensions: 880635
Number of successful extensions: 2067
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2026
Number of HSP's gapped (non-prelim): 31
length of query: 484
length of database: 18,247,518
effective HSP length: 106
effective length of query: 378
effective length of database: 14,233,722
effective search space: 5380346916
effective search space used: 5380346916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.