Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC401980 Sequence: fasta or formatted (245aa) NCBI GI: 239741432
Description:

PREDICTED: similar to hCG1811644

Not currently referenced in the text

Other entries for this name:
alt mRNA {245aa} PREDICTED: similar to hCG1811644
alt mRNA {245aa} PREDICTED: similar to hCG1811644
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         13           3
 C cysteine            2.0          5           1
 D aspartate           5.3         13           2
 E glutamate           5.7         14           3
 F phenylalanine       6.5         16           2
 G glycine             4.5         11           2
 H histidine           3.3          8           2
 I isoleucine          4.1         10           1
 K lysine              3.7          9           1
 L leucine            13.9         34           3
 M methionine          1.6          4           1
 N asparagine          4.9         12           1
 P proline             5.3         13           1
 Q glutamine           4.5         11           2
 R arginine            3.3          8           1
 S serine              9.0         22           2
 T threonine           5.3         13           1
 V valine              7.3         18           2
 W tryptophan          0.8          2           1
 Y tyrosine            3.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1811644 
LOC401980             1.000   PREDICTED: similar to hCG1811644 
LOC401980             1.000   PREDICTED: similar to hCG1811644 
MGAT4C                0.197   alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylgluc...
MGAT4B                0.095   alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylgluco...
MGAT4B                0.095   alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucos...
MGAT4A                0.083   alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylgluc...
MGAT4A                0.083   alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucos...
TLR8                  0.011   toll-like receptor 8 
IL11                  0.011   interleukin 11 precursor 
PDE4C                 0.008   phosphodiesterase 4C isoform PDE4C-2 
PDE4C                 0.008   phosphodiesterase 4C isoform PDE4C-3 
PDE4C                 0.008   phosphodiesterase 4C isoform PDE4C-1 
LAMC3                 0.006   laminin, gamma 3 precursor 
LEPREL2               0.006   leprecan-like 2 
SLC12A3               0.006   solute carrier family 12, member 3 isoform 2 
SLC12A3               0.006   solute carrier family 12, member 3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press