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Search of human proteins with 16418349
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16418349 cob(I)alamin adenosyltransferase precursor [Homo
sapiens]
(250 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16418349 cob(I)alamin adenosyltransferase precursor [Homo sap... 503 e-143
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 35 0.061
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 35 0.061
gi|22212927 nuclear transcription factor, X-box binding 1 isofor... 31 0.89
gi|22212925 nuclear transcription factor, X-box binding 1 isofor... 31 0.89
gi|21361137 nuclear transcription factor, X-box binding 1 isofor... 31 0.89
gi|239752802 PREDICTED: hypothetical protein [Homo sapiens] 30 2.6
gi|239747364 PREDICTED: hypothetical protein [Homo sapiens] 30 2.6
gi|239741189 PREDICTED: hypothetical protein XP_002342132 [Homo ... 30 2.6
gi|213972621 ATPase type 13A2 isoform 3 [Homo sapiens] 29 4.4
gi|213972619 ATPase type 13A2 isoform 2 [Homo sapiens] 29 4.4
gi|13435129 ATPase type 13A2 isoform 1 [Homo sapiens] 29 4.4
gi|153945850 doublesex and mab-3 related transcription factor 2 ... 28 5.8
gi|7019333 nuclear receptor binding protein [Homo sapiens] 28 5.8
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 28 7.5
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 28 7.5
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 28 7.5
gi|23199998 NOL1/NOP2/Sun domain family, member 5 isoform 1 [Hom... 28 7.5
gi|8922322 NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo... 28 7.5
>gi|16418349 cob(I)alamin adenosyltransferase precursor [Homo
sapiens]
Length = 250
Score = 503 bits (1294), Expect = e-143
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MAVCGLGSRLGLGSRLGLRGCFGAARLLYPRFQSRGPQGVEDGDRPQPSSKTPRIPKIYT 60
MAVCGLGSRLGLGSRLGLRGCFGAARLLYPRFQSRGPQGVEDGDRPQPSSKTPRIPKIYT
Sbjct: 1 MAVCGLGSRLGLGSRLGLRGCFGAARLLYPRFQSRGPQGVEDGDRPQPSSKTPRIPKIYT 60
Query: 61 KTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFALELVTEKGHTFAEELQKIQCT 120
KTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFALELVTEKGHTFAEELQKIQCT
Sbjct: 61 KTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFALELVTEKGHTFAEELQKIQCT 120
Query: 121 LQDVGSALATPCSSAREAHLKYTTFKAGPILELEQWIDKYTSQLPPLTAFILPSGGKISS 180
LQDVGSALATPCSSAREAHLKYTTFKAGPILELEQWIDKYTSQLPPLTAFILPSGGKISS
Sbjct: 121 LQDVGSALATPCSSAREAHLKYTTFKAGPILELEQWIDKYTSQLPPLTAFILPSGGKISS 180
Query: 181 ALHFCRAVCRRAERRVVPLVQMGETDANVAKFLNRLSDYLFTLARYAAMKEGNQEKIYMK 240
ALHFCRAVCRRAERRVVPLVQMGETDANVAKFLNRLSDYLFTLARYAAMKEGNQEKIYMK
Sbjct: 181 ALHFCRAVCRRAERRVVPLVQMGETDANVAKFLNRLSDYLFTLARYAAMKEGNQEKIYMK 240
Query: 241 NDPSAESEGL 250
NDPSAESEGL
Sbjct: 241 NDPSAESEGL 250
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 35.0 bits (79), Expect = 0.061
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 34 SRGPQGVEDGDRPQPSSKTPRIPKIYTKTGDKGF--SSTFTGERRP---KDDQ--VFEAV 86
S GP + G +S TP P + TG +G SS T E+ K DQ V +
Sbjct: 720 SPGPSALSPGSSGLSNSHTPVRPPSTSSTGSRGSCGSSGRTAEKTSLSFKSDQVKVKQEP 779
Query: 87 GTTDELSSAIGFALELVTEKGHTFAEELQKIQCTLQDVGSALATPCSS 134
GT DE+ S G + TE G A C L S+L P S+
Sbjct: 780 GTEDEICSFSGGVKQEKTEDGRRSA-------CMLSSPESSLTPPLST 820
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 35.0 bits (79), Expect = 0.061
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 34 SRGPQGVEDGDRPQPSSKTPRIPKIYTKTGDKGF--SSTFTGERRP---KDDQ--VFEAV 86
S GP + G +S TP P + TG +G SS T E+ K DQ V +
Sbjct: 720 SPGPSALSPGSSGLSNSHTPVRPPSTSSTGSRGSCGSSGRTAEKTSLSFKSDQVKVKQEP 779
Query: 87 GTTDELSSAIGFALELVTEKGHTFAEELQKIQCTLQDVGSALATPCSS 134
GT DE+ S G + TE G A C L S+L P S+
Sbjct: 780 GTEDEICSFSGGVKQEKTEDGRRSA-------CMLSSPESSLTPPLST 820
>gi|22212927 nuclear transcription factor, X-box binding 1 isoform 3
[Homo sapiens]
Length = 833
Score = 31.2 bits (69), Expect = 0.89
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 24/145 (16%)
Query: 14 SRLGLRGCFGAARLLYPRFQSRGPQGVEDGDRPQPSSKTPRIPKIYTKTGDKGFSSTFTG 73
SR G+ +GA R R+ + P +G RP+P P+ +G T G
Sbjct: 223 SRKGVLDGYGARRNEQRRYPQKRPPWEVEGARPRPGRNPPK---------QEGHRHTNAG 273
Query: 74 ERR-----PKDDQVFEAVGTTDELSSAIGFALELVTEKGHTFAEELQKIQCTLQDVGSAL 128
R PKDD +T + + L ++ + +E +CT++ +
Sbjct: 274 HRNNMGPIPKDDLNERPAKSTCDSEN-----LAVINKSSRRVDQE----KCTVRRQDPQV 324
Query: 129 ATPCSSAREAH-LKYTTFKAGPILE 152
+P S ++ H LK G ++E
Sbjct: 325 VSPFSRGKQNHVLKNVETHTGSLIE 349
>gi|22212925 nuclear transcription factor, X-box binding 1 isoform 2
[Homo sapiens]
Length = 1024
Score = 31.2 bits (69), Expect = 0.89
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 24/145 (16%)
Query: 14 SRLGLRGCFGAARLLYPRFQSRGPQGVEDGDRPQPSSKTPRIPKIYTKTGDKGFSSTFTG 73
SR G+ +GA R R+ + P +G RP+P P+ +G T G
Sbjct: 223 SRKGVLDGYGARRNEQRRYPQKRPPWEVEGARPRPGRNPPK---------QEGHRHTNAG 273
Query: 74 ERR-----PKDDQVFEAVGTTDELSSAIGFALELVTEKGHTFAEELQKIQCTLQDVGSAL 128
R PKDD +T + + L ++ + +E +CT++ +
Sbjct: 274 HRNNMGPIPKDDLNERPAKSTCDSEN-----LAVINKSSRRVDQE----KCTVRRQDPQV 324
Query: 129 ATPCSSAREAH-LKYTTFKAGPILE 152
+P S ++ H LK G ++E
Sbjct: 325 VSPFSRGKQNHVLKNVETHTGSLIE 349
>gi|21361137 nuclear transcription factor, X-box binding 1 isoform 1
[Homo sapiens]
Length = 1120
Score = 31.2 bits (69), Expect = 0.89
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 24/145 (16%)
Query: 14 SRLGLRGCFGAARLLYPRFQSRGPQGVEDGDRPQPSSKTPRIPKIYTKTGDKGFSSTFTG 73
SR G+ +GA R R+ + P +G RP+P P+ +G T G
Sbjct: 223 SRKGVLDGYGARRNEQRRYPQKRPPWEVEGARPRPGRNPPK---------QEGHRHTNAG 273
Query: 74 ERR-----PKDDQVFEAVGTTDELSSAIGFALELVTEKGHTFAEELQKIQCTLQDVGSAL 128
R PKDD +T + + L ++ + +E +CT++ +
Sbjct: 274 HRNNMGPIPKDDLNERPAKSTCDSEN-----LAVINKSSRRVDQE----KCTVRRQDPQV 324
Query: 129 ATPCSSAREAH-LKYTTFKAGPILE 152
+P S ++ H LK G ++E
Sbjct: 325 VSPFSRGKQNHVLKNVETHTGSLIE 349
>gi|239752802 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 29.6 bits (65), Expect = 2.6
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 12 LGSRLGLRGCFGA-------ARLLYPRFQSRGPQGVEDGDRPQPSSKTPRIPKIYTKTGD 64
LGSR + GA A LL P + R V RP S +PR P++ T
Sbjct: 2 LGSRYAGQTFSGASPRGVSDALLLAPSGRQRSRDTVASPSRPSLSRPSPRTPRM---THS 58
Query: 65 KGFSSTFTGERRPKDDQVFEAVGTTDELSSAIG 97
F T + +RP + +F + TT S + G
Sbjct: 59 GKFYRTTSLRQRPVRNNLFFRLPTTQTQSQSTG 91
>gi|239747364 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 29.6 bits (65), Expect = 2.6
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 12 LGSRLGLRGCFGA-------ARLLYPRFQSRGPQGVEDGDRPQPSSKTPRIPKIYTKTGD 64
LGSR + GA A LL P + R V RP S +PR P++ T
Sbjct: 2 LGSRYAGQTFSGASPRGVSDALLLAPSGRQRSRDTVASPSRPSLSRPSPRTPRM---THS 58
Query: 65 KGFSSTFTGERRPKDDQVFEAVGTTDELSSAIG 97
F T + +RP + +F + TT S + G
Sbjct: 59 GKFYRTTSLRQRPVRNNLFFRLPTTQTQSQSTG 91
>gi|239741189 PREDICTED: hypothetical protein XP_002342132 [Homo
sapiens]
Length = 170
Score = 29.6 bits (65), Expect = 2.6
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 12 LGSRLGLRGCFGA-------ARLLYPRFQSRGPQGVEDGDRPQPSSKTPRIPKIYTKTGD 64
LGSR + GA A LL P + R V RP S +PR P++ T
Sbjct: 2 LGSRYAGQTFSGASPRGVSDALLLAPSGRQRSRDTVASPSRPSLSRPSPRTPRM---THS 58
Query: 65 KGFSSTFTGERRPKDDQVFEAVGTTDELSSAIG 97
F T + +RP + +F + TT S + G
Sbjct: 59 GKFYRTTSLRQRPVRNNLFFRLPTTQTQSQSTG 91
>gi|213972621 ATPase type 13A2 isoform 3 [Homo sapiens]
Length = 1158
Score = 28.9 bits (63), Expect = 4.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 137 EAHLKYTTFKAGPILELEQWIDKYTSQLPPLTAFILPSGGKISSALH 183
E H ++T F IL+ ++ + + T F GG +SS LH
Sbjct: 362 ETHRRHTLFCGTLILQARAYVGPHVLAVVTRTGFCTAKGGLVSSILH 408
>gi|213972619 ATPase type 13A2 isoform 2 [Homo sapiens]
Length = 1175
Score = 28.9 bits (63), Expect = 4.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 137 EAHLKYTTFKAGPILELEQWIDKYTSQLPPLTAFILPSGGKISSALH 183
E H ++T F IL+ ++ + + T F GG +SS LH
Sbjct: 362 ETHRRHTLFCGTLILQARAYVGPHVLAVVTRTGFCTAKGGLVSSILH 408
>gi|13435129 ATPase type 13A2 isoform 1 [Homo sapiens]
Length = 1180
Score = 28.9 bits (63), Expect = 4.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 137 EAHLKYTTFKAGPILELEQWIDKYTSQLPPLTAFILPSGGKISSALH 183
E H ++T F IL+ ++ + + T F GG +SS LH
Sbjct: 367 ETHRRHTLFCGTLILQARAYVGPHVLAVVTRTGFCTAKGGLVSSILH 413
>gi|153945850 doublesex and mab-3 related transcription factor 2
isoform 2 [Homo sapiens]
Length = 561
Score = 28.5 bits (62), Expect = 5.8
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 44 DRPQPSSKTPRIPKIYTKTGDK--------GFSSTFTGERRPKDDQVFEAVGTTDELSSA 95
D+ P KTP + + + +T K TFT +R KD V + VGT ++
Sbjct: 481 DKSGPELKTPFVKEAFEETPKKHRECLVKDNQKYTFTIDRCAKDLFVAKQVGTKLSVNEP 540
Query: 96 IGFALELVTEK 106
+ F++E + ++
Sbjct: 541 LSFSVESILKR 551
>gi|7019333 nuclear receptor binding protein [Homo sapiens]
Length = 535
Score = 28.5 bits (62), Expect = 5.8
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 123 DVGSALAT-PCSSAREAHLKYTTFKAGPILELEQWIDKYTSQLPPLTAFILP 173
D + LA P RE T + P LEL+++++ + + PLTAF LP
Sbjct: 361 DTSAVLAEIPAGPGREP--VQTLYSQSPALELDKFLEDVRNGIYPLTAFGLP 410
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 28.1 bits (61), Expect = 7.5
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 5 GLGSRLGLGSRLGLRGCFGAARLLYPRFQSRGPQGVEDGDRPQPSSKTPRIPKIYTKTGD 64
GL + GL GL+G G + +P GPQGVE P P P + + GD
Sbjct: 1012 GLPGQPGLIGPPGLKGTIGD--MGFP-----GPQGVEGPPGPSGVPGQPGSPGLPGQKGD 1064
Query: 65 KG 66
KG
Sbjct: 1065 KG 1066
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 28.1 bits (61), Expect = 7.5
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 5 GLGSRLGLGSRLGLRGCFGAARLLYPRFQSRGPQGVEDGDRPQPSSKTPRIPKIYTKTGD 64
GL + GL GL+G G + +P GPQGVE P P P + + GD
Sbjct: 1012 GLPGQPGLIGPPGLKGTIGD--MGFP-----GPQGVEGPPGPSGVPGQPGSPGLPGQKGD 1064
Query: 65 KG 66
KG
Sbjct: 1065 KG 1066
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 28.1 bits (61), Expect = 7.5
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 5 GLGSRLGLGSRLGLRGCFGAARLLYPRFQSRGPQGVEDGDRPQPSSKTPRIPKIYTKTGD 64
GL + GL GL+G G + +P GPQGVE P P P + + GD
Sbjct: 1012 GLPGQPGLIGPPGLKGTIGD--MGFP-----GPQGVEGPPGPSGVPGQPGSPGLPGQKGD 1064
Query: 65 KG 66
KG
Sbjct: 1065 KG 1066
>gi|23199998 NOL1/NOP2/Sun domain family, member 5 isoform 1 [Homo
sapiens]
Length = 466
Score = 28.1 bits (61), Expect = 7.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 25 ARLLYPRFQSRGPQGVEDGDRPQPSSKTPRIPKIYT 60
ARL R SR +E G RP P+S+ PR ++ T
Sbjct: 107 ARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNT 142
>gi|8922322 NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo
sapiens]
Length = 429
Score = 28.1 bits (61), Expect = 7.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 25 ARLLYPRFQSRGPQGVEDGDRPQPSSKTPRIPKIYT 60
ARL R SR +E G RP P+S+ PR ++ T
Sbjct: 107 ARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNT 142
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,782,741
Number of Sequences: 37866
Number of extensions: 436894
Number of successful extensions: 1119
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1107
Number of HSP's gapped (non-prelim): 24
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.