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Search of human proteins with 161484632
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|161484632 nescient helix loop helix 2 [Homo sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|161484632 nescient helix loop helix 2 [Homo sapiens] 268 8e-73
gi|5031945 nescient helix loop helix 2 [Homo sapiens] 268 8e-73
gi|5031943 nescient helix loop helix 1 [Homo sapiens] 145 1e-35
gi|116805332 musculin [Homo sapiens] 63 6e-11
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens] 63 8e-11
gi|148922889 scleraxis homolog B [Homo sapiens] 62 1e-10
gi|186972126 scleraxis homolog A [Homo sapiens] 62 1e-10
gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens] 62 1e-10
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi... 61 2e-10
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo... 59 2e-09
gi|239749439 PREDICTED: similar to transcription factor 23 [Homo... 58 2e-09
gi|239743573 PREDICTED: similar to transcription factor 23 [Homo... 58 2e-09
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho... 58 3e-09
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 58 3e-09
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H... 57 6e-09
gi|23097242 nephew of atonal 3 [Homo sapiens] 56 8e-09
gi|4507741 twist [Homo sapiens] 55 2e-08
gi|38202237 transcription factor 21 [Homo sapiens] 55 2e-08
gi|38202239 transcription factor 21 [Homo sapiens] 55 2e-08
gi|239754900 PREDICTED: similar to transcription factor 23 [Homo... 54 4e-08
gi|17981708 twist homolog 2 [Homo sapiens] 54 5e-08
gi|153792190 neurogenic differentiation 4 [Homo sapiens] 52 1e-07
gi|4885075 atonal homolog 1 [Homo sapiens] 52 1e-07
gi|21553337 atonal homolog 7 [Homo sapiens] 51 2e-07
gi|75677394 transcription factor 23 [Homo sapiens] 51 2e-07
gi|38455396 neurogenin 1 [Homo sapiens] 50 7e-07
gi|121114306 neurogenic differentiation 1 [Homo sapiens] 50 7e-07
gi|27475985 neurogenic differentiation 6 [Homo sapiens] 48 2e-06
gi|68989258 neurogenin 3 [Homo sapiens] 48 3e-06
gi|4504573 inhibitor of DNA binding 4, dominant negative helix-l... 47 4e-06
>gi|161484632 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 268 bits (686), Expect = 8e-73
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP 60
MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP
Sbjct: 1 MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP 60
Query: 61 QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120
QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR
Sbjct: 61 QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120
Query: 121 LAICYISYLNHVLDV 135
LAICYISYLNHVLDV
Sbjct: 121 LAICYISYLNHVLDV 135
>gi|5031945 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 268 bits (686), Expect = 8e-73
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP 60
MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP
Sbjct: 1 MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHP 60
Query: 61 QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120
QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR
Sbjct: 61 QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120
Query: 121 LAICYISYLNHVLDV 135
LAICYISYLNHVLDV
Sbjct: 121 LAICYISYLNHVLDV 135
>gi|5031943 nescient helix loop helix 1 [Homo sapiens]
Length = 133
Score = 145 bits (366), Expect = 1e-35
Identities = 78/101 (77%), Positives = 81/101 (80%), Gaps = 8/101 (7%)
Query: 43 EAEGDGKGGSRAALYPHP--------QQLSREEKRRRRRATAKYRSAHATRERIRVEAFN 94
+ G G G A P P Q LSREE+RRRRRATAKYR+AHATRERIRVEAFN
Sbjct: 33 DGAGPGGPGGGQARGPEPGEPGRKDLQHLSREERRRRRRATAKYRTAHATRERIRVEAFN 92
Query: 95 LAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV 135
LAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV
Sbjct: 93 LAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV 133
>gi|116805332 musculin [Homo sapiens]
Length = 206
Score = 63.2 bits (152), Expect = 6e-11
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 15/133 (11%)
Query: 8 AADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEE-----AEGDGKGGSRAA--LYPHP 60
A+ SD+ S+ DP+ G + LG+ E + A G G GGS P P
Sbjct: 39 ASPSDNSSAEEEDPD--GEEERCALGTAGSAEGCKRKRPRVAGGGGAGGSAGGGGKKPLP 96
Query: 61 QQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120
+ S E ++ +R A RER R+ + AF+ L+ LP +PPD KLSK++ LR
Sbjct: 97 AKGSAAECKQSQRNAAN------ARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLR 150
Query: 121 LAICYISYLNHVL 133
LA YI++L +L
Sbjct: 151 LASSYIAHLRQLL 163
>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
Length = 331
Score = 62.8 bits (151), Expect = 8e-11
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 84 TRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLD 134
+RER R + N AFAELRKL+PT PPDKKLSK EILRLA+ YI++L +L+
Sbjct: 194 SRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKLLN 244
>gi|148922889 scleraxis homolog B [Homo sapiens]
Length = 201
Score = 62.0 bits (149), Expect = 1e-10
Identities = 44/113 (38%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 35 VSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKRRR---RRATA-----------KYRS 80
VS L E+ D G H + + RRR RRA + R
Sbjct: 19 VSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRH 78
Query: 81 AHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
RER R + N AF LR L+PT P D+KLSKIE LRLA YIS+L +VL
Sbjct: 79 TANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
>gi|186972126 scleraxis homolog A [Homo sapiens]
Length = 201
Score = 62.0 bits (149), Expect = 1e-10
Identities = 44/113 (38%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 35 VSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKRRR---RRATA-----------KYRS 80
VS L E+ D G H + + RRR RRA + R
Sbjct: 19 VSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRH 78
Query: 81 AHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
RER R + N AF LR L+PT P D+KLSKIE LRLA YIS+L +VL
Sbjct: 79 TANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
>gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens]
Length = 108
Score = 62.0 bits (149), Expect = 1e-10
Identities = 33/50 (66%), Positives = 39/50 (78%)
Query: 84 TRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
TRER R + N AFA+LRKL+PT PPDKKLSK E LRLA+ YI++L VL
Sbjct: 9 TRERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVL 58
>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
sapiens]
Length = 280
Score = 61.2 bits (147), Expect = 2e-10
Identities = 32/50 (64%), Positives = 39/50 (78%)
Query: 84 TRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
+RER R + N AFAELRKLLPT PPD+KLSK E+LRLA+ YI +L +L
Sbjct: 157 SRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVRLL 206
>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
sapiens]
Length = 199
Score = 58.5 bits (140), Expect = 2e-09
Identities = 31/57 (54%), Positives = 39/57 (68%)
Query: 77 KYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
+ R A RER R ++ N AF LR L+PT P D+KLSKIE LRLA YI++L +VL
Sbjct: 72 RQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVL 128
>gi|239749439 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 58.2 bits (139), Expect = 2e-09
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 72 RRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNH 131
R + + +A+A RER RV+ AF EL++ LP++PPD KLSK+++L LA YI++L
Sbjct: 44 RSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTR 103
Query: 132 VL 133
L
Sbjct: 104 SL 105
>gi|239743573 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 58.2 bits (139), Expect = 2e-09
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 72 RRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNH 131
R + + +A+A RER RV+ AF EL++ LP++PPD KLSK+++L LA YI++L
Sbjct: 44 RSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTR 103
Query: 132 VL 133
L
Sbjct: 104 SL 105
>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
sapiens]
Length = 215
Score = 57.8 bits (138), Expect = 3e-09
Identities = 29/49 (59%), Positives = 36/49 (73%)
Query: 85 RERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
+ER R E+ N AFAELR+ +P +P D KLSKI+ LRLA YI+YL VL
Sbjct: 102 KERRRTESINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDVL 150
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 57.8 bits (138), Expect = 3e-09
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 69 RRRRRATAK-----YRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAI 123
RRRRR ++ R A RER R+++ N AF LR +PTLP +K+LSK++ LRLAI
Sbjct: 150 RRRRRVRSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAI 209
Query: 124 CYISYLNHVL 133
YI++L+ ++
Sbjct: 210 GYINFLSELV 219
>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
sapiens]
Length = 217
Score = 56.6 bits (135), Expect = 6e-09
Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 77 KYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
K R +ER R ++ N AFAELR+ +P +P D KLSKI+ LRLA YI+YL +L
Sbjct: 99 KRRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLL 155
>gi|23097242 nephew of atonal 3 [Homo sapiens]
Length = 166
Score = 56.2 bits (134), Expect = 8e-09
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 39 EPVEEAEGDGKGGSRAALYPHPQQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFA 98
E E +GDG+ L R +R+R T R A RER R+ N AF
Sbjct: 65 EECEVDQGDGEEEEEEERGRGVSLLGRP--KRKRVITYAQRQAANIRERKRMFNLNEAFD 122
Query: 99 ELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLD 134
+LR+ +PT +K+LS+IE LRLAI YIS++ +L+
Sbjct: 123 QLRRKVPTFAYEKRLSRIETLRLAIVYISFMTELLE 158
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 55.1 bits (131), Expect = 2e-08
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 46 GDGKGGSRAALYPHPQQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLP 105
G G GG ++ PQ E+ + +R A RER R ++ N AFA LRK++P
Sbjct: 86 GAGGGGGSSSGGGSPQSY---EELQTQRVMAN------VRERQRTQSLNEAFAALRKIIP 136
Query: 106 TLPPDKKLSKIEILRLAICYISYLNHVL 133
TLP D KLSKI+ L+LA YI +L VL
Sbjct: 137 TLPSD-KLSKIQTLKLAARYIDFLYQVL 163
>gi|38202237 transcription factor 21 [Homo sapiens]
Length = 179
Score = 54.7 bits (130), Expect = 2e-08
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 28/133 (21%)
Query: 29 TKVLGSVSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKR--------------RRRRA 74
T L V DL+ VE E DG + + + E +RR+A
Sbjct: 3 TGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRRKA 62
Query: 75 TAK--------------YRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120
K R+A RER R+ + AF+ L+ LP +PPD KLSK++ LR
Sbjct: 63 PTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLR 122
Query: 121 LAICYISYLNHVL 133
LA YI++L +L
Sbjct: 123 LASSYIAHLRQIL 135
>gi|38202239 transcription factor 21 [Homo sapiens]
Length = 179
Score = 54.7 bits (130), Expect = 2e-08
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 28/133 (21%)
Query: 29 TKVLGSVSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKR--------------RRRRA 74
T L V DL+ VE E DG + + + E +RR+A
Sbjct: 3 TGSLSDVEDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRRKA 62
Query: 75 TAK--------------YRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILR 120
K R+A RER R+ + AF+ L+ LP +PPD KLSK++ LR
Sbjct: 63 PTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLR 122
Query: 121 LAICYISYLNHVL 133
LA YI++L +L
Sbjct: 123 LASSYIAHLRQIL 135
>gi|239754900 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 53.9 bits (128), Expect = 4e-08
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 82 HATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
+A RER RV+ AF E+++ LP++PPD KLSK+++L LA YI++L L
Sbjct: 54 NAARERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSL 105
>gi|17981708 twist homolog 2 [Homo sapiens]
Length = 160
Score = 53.5 bits (127), Expect = 5e-08
Identities = 29/49 (59%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 85 RERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
RER R ++ N AFA LRK++PTLP D KLSKI+ L+LA YI +L VL
Sbjct: 74 RERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVL 121
>gi|153792190 neurogenic differentiation 4 [Homo sapiens]
Length = 331
Score = 52.4 bits (124), Expect = 1e-07
Identities = 37/97 (38%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 38 LEPVEEAEGDGKGGSRAALYPHPQQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAF 97
+E EE E DG+ R +R E+ R RR A RER R+ N A
Sbjct: 54 IEEEEEEEEDGEKPKRRGPKKKKMTKARLERFRARRVKAN------ARERTRMHGLNDAL 107
Query: 98 AELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLD 134
LR+++P +KLSKIE LRLA YI L+ VL+
Sbjct: 108 DNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLE 144
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 52.0 bits (123), Expect = 1e-07
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 13/113 (11%)
Query: 25 GGTDTKVLGSVSDLEPVEEAEG----DGKGGSRAALYPHPQQLSREEKRRRRRATAKYRS 80
G + +K G V E + + +G D G SR P +Q++ +K+RR A A
Sbjct: 112 GASSSKSPGPVKVREQLCKLKGGVVVDELGCSRQRA-PSSKQVNGVQKQRRLAANA---- 166
Query: 81 AHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
RER R+ N AF +LR ++P+ DKKLSK E L++A YI+ L+ +L
Sbjct: 167 ----RERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELL 215
>gi|21553337 atonal homolog 7 [Homo sapiens]
Length = 152
Score = 51.2 bits (121), Expect = 2e-07
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 71 RRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLN 130
R + A+ R A RER R++ N AF LR+++P DKKLSK E L++A+ YI L
Sbjct: 34 RLESAARRRLAANARERRRMQGLNTAFDRLRRVVPQWGQDKKLSKYETLQMALSYIMALT 93
Query: 131 HVL 133
+L
Sbjct: 94 RIL 96
>gi|75677394 transcription factor 23 [Homo sapiens]
Length = 214
Score = 51.2 bits (121), Expect = 2e-07
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 82 HATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
+A RER RV AF L+ LP +PPD KLSK+++L LA YI++L L
Sbjct: 81 NAARERSRVRTLRQAFLALQAALPAVPPDTKLSKLDVLVLAASYIAHLTRTL 132
>gi|38455396 neurogenin 1 [Homo sapiens]
Length = 237
Score = 49.7 bits (117), Expect = 7e-07
Identities = 38/95 (40%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 52 SRAALYPHPQQLSREEKRRRRRATAKYRSA---HATR----------ERIRVEAFNLAFA 98
SRA+ P Q E++RRRRR + RS H+ R ER R+ N A
Sbjct: 56 SRASEVPGAQD--DEQERRRRRGRTRVRSEALLHSLRRSRRVKANDRERNRMHNLNAALD 113
Query: 99 ELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
LR +LP+ P D KL+KIE LR A YI L L
Sbjct: 114 ALRSVLPSFPDDTKLTKIETLRFAYNYIWALAETL 148
>gi|121114306 neurogenic differentiation 1 [Homo sapiens]
Length = 356
Score = 49.7 bits (117), Expect = 7e-07
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 6 DQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHPQQLSR 65
D+ D +A D GG + + + E EE + D K R P ++++
Sbjct: 37 DKKEDDLEAMNAEEDSLRNGGEEEDEDEDLEEEEEEEEEDDDQKPKRRG---PKKKKMT- 92
Query: 66 EEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICY 125
K R R + A+A RER R+ N A LRK++P +KLSKIE LRLA Y
Sbjct: 93 --KARLERFKLRRMKANA-RERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNY 149
Query: 126 ISYLNHVL 133
I L+ +L
Sbjct: 150 IWALSEIL 157
>gi|27475985 neurogenic differentiation 6 [Homo sapiens]
Length = 337
Score = 48.1 bits (113), Expect = 2e-06
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 42 EEAEGDGKGGSRAALYPHPQQLSREEKRRRRRATAKYRSAHAT-RERIRVEAFNLAFAEL 100
EE E D + L P + L +++ + R K+R A RER R+ N A L
Sbjct: 59 EEEEEDREEEDENGL-PRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNL 117
Query: 101 RKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV 135
RK++P +KLSKIE LRLA YI L+ +L +
Sbjct: 118 RKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRI 152
>gi|68989258 neurogenin 3 [Homo sapiens]
Length = 214
Score = 47.8 bits (112), Expect = 3e-06
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 63 LSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLA 122
LS++ + RR++A RER R+ N A LR +LPT P D KL+KIE LR A
Sbjct: 77 LSKQRRSRRKKAN--------DRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFA 128
Query: 123 ICYISYLNHVLDV 135
YI L L +
Sbjct: 129 HNYIWALTQTLRI 141
>gi|4504573 inhibitor of DNA binding 4, dominant negative
helix-loop-helix protein [Homo sapiens]
Length = 161
Score = 47.4 bits (111), Expect = 4e-06
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 34 SVSDLEPVEEAEGDGKGGSRAALY---PHPQQLSREEKRRRRRATAKYRSAHATRERIRV 90
+VS + P G GG AL H L A A+ ++A A + +
Sbjct: 3 AVSPVRPSGRKAPSGCGGGELALRCLAEHGHSLGGSAAAAAAAAAARCKAAEAAADEPAL 62
Query: 91 EA---FNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLD 134
N ++ LR+L+PT+PP+KK+SK+EIL+ I YI L L+
Sbjct: 63 CLQCDMNDCYSRLRRLVPTIPPNKKVSKVEILQHVIDYILDLQLALE 109
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,488,073
Number of Sequences: 37866
Number of extensions: 234539
Number of successful extensions: 1040
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 156
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.