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Search of human proteins with 157951718
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157951718 GSG1-like isoform 1 [Homo sapiens]
(331 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157951718 GSG1-like isoform 1 [Homo sapiens] 695 0.0
gi|21389571 GSG1-like isoform 2 [Homo sapiens] 381 e-106
gi|123317861 germ cell associated 1 isoform 2 [Homo sapiens] 256 1e-68
gi|123317881 germ cell associated 1 isoform 4 [Homo sapiens] 245 5e-65
gi|169211272 PREDICTED: germ cell-specific gene 1-like protein 2... 243 2e-64
gi|169211660 PREDICTED: germ cell-specific gene 1-like protein 2... 243 2e-64
gi|169210878 PREDICTED: germ cell-specific gene 1-like protein 2... 243 2e-64
gi|123317847 germ cell associated 1 isoform 1 [Homo sapiens] 102 4e-22
gi|123317872 germ cell associated 1 isoform 3 [Homo sapiens] 91 1e-18
gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Ho... 41 0.002
gi|21361975 voltage-dependent calcium channel gamma-7 subunit [H... 39 0.005
gi|50345279 claudin 18 isoform 2 [Homo sapiens] 38 0.011
gi|10863887 claudin 1 [Homo sapiens] 38 0.014
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 38 0.014
gi|12707580 paired-like homeobox 2b [Homo sapiens] 36 0.042
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens] 36 0.042
gi|4505907 peripheral myelin protein 22 [Homo sapiens] 36 0.054
gi|24430165 peripheral myelin protein 22 [Homo sapiens] 36 0.054
gi|24430163 peripheral myelin protein 22 [Homo sapiens] 36 0.054
gi|7705961 claudin 18 isoform 1 [Homo sapiens] 36 0.054
gi|22027551 voltage-dependent calcium channel gamma-5 subunit is... 36 0.054
gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Ho... 35 0.071
gi|66730481 neuregulin 3 [Homo sapiens] 35 0.093
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 35 0.12
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 35 0.12
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 35 0.12
gi|24497554 homeobox A13 [Homo sapiens] 34 0.21
gi|32479521 dishevelled 1 [Homo sapiens] 33 0.35
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ... 33 0.35
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ... 33 0.35
>gi|157951718 GSG1-like isoform 1 [Homo sapiens]
Length = 331
Score = 695 bits (1794), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MKTSRRGRALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGCGQGGRANCPNSGANAT 60
MKTSRRGRALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGCGQGGRANCPNSGANAT
Sbjct: 1 MKTSRRGRALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGCGQGGRANCPNSGANAT 60
Query: 61 ANGTAAPAAAAAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEELSGLGEKC 120
ANGTAAPAAAAAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEELSGLGEKC
Sbjct: 61 ANGTAAPAAAAAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEELSGLGEKC 120
Query: 121 RSFIDLAPASEKGVLWLSVVSEVLYILLLVVGFSLMCLELFHSSNVIDGLKLNAFAAVFT 180
RSFIDLAPASEKGVLWLSVVSEVLYILLLVVGFSLMCLELFHSSNVIDGLKLNAFAAVFT
Sbjct: 121 RSFIDLAPASEKGVLWLSVVSEVLYILLLVVGFSLMCLELFHSSNVIDGLKLNAFAAVFT 180
Query: 181 VLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAWGSFTCCMAASVTTLNS 240
VLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAWGSFTCCMAASVTTLNS
Sbjct: 181 VLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAWGSFTCCMAASVTTLNS 240
Query: 241 YTKTVIEFRHKRKVFEQGYREEPTFIDPEAIKYFRERMEKRDGSEEDFHLDCRHERYPAR 300
YTKTVIEFRHKRKVFEQGYREEPTFIDPEAIKYFRERMEKRDGSEEDFHLDCRHERYPAR
Sbjct: 241 YTKTVIEFRHKRKVFEQGYREEPTFIDPEAIKYFRERMEKRDGSEEDFHLDCRHERYPAR 300
Query: 301 HQPHMADSWPRSSAQEAPELNRQCWVLGHWV 331
HQPHMADSWPRSSAQEAPELNRQCWVLGHWV
Sbjct: 301 HQPHMADSWPRSSAQEAPELNRQCWVLGHWV 331
>gi|21389571 GSG1-like isoform 2 [Homo sapiens]
Length = 176
Score = 381 bits (979), Expect = e-106
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 156 MCLELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWD 215
MCLELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWD
Sbjct: 1 MCLELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWD 60
Query: 216 YGWSFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDPEAIKYFR 275
YGWSFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDPEAIKYFR
Sbjct: 61 YGWSFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDPEAIKYFR 120
Query: 276 ERMEKRDGSEEDFHLDCRHERYPARHQPHMADSWPRSSAQEAPELNRQCWVLGHWV 331
ERMEKRDGSEEDFHLDCRHERYPARHQPHMADSWPRSSAQEAPELNRQCWVLGHWV
Sbjct: 121 ERMEKRDGSEEDFHLDCRHERYPARHQPHMADSWPRSSAQEAPELNRQCWVLGHWV 176
>gi|123317861 germ cell associated 1 isoform 2 [Homo sapiens]
Length = 326
Score = 256 bits (655), Expect = 1e-68
Identities = 124/256 (48%), Positives = 173/256 (67%), Gaps = 17/256 (6%)
Query: 8 RALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGCGQGGRANCPNSGANATANGTAAP 67
R LL+ L++L+L F+TT+ L+ +W GTQ+VPKP C +G A C + + + +
Sbjct: 14 RTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMPVSLDGDTNTST 73
Query: 68 AAAAAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEELSGLGEKCRSFIDLA 127
Y+WETGDDRF FR+F +G+W SCEE + GE+CRSFI+L
Sbjct: 74 QEVVQ--------------YNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELT 119
Query: 128 PASEKGVLWLSVVSEVLYILLLVVGFSLMCLELFHSSNVIDGLKLNAFAAVFTVLSGLLG 187
P +++ +LWLS+ +++ YI L + F L+ +L + N GLKL+AFAAV +VLSGLLG
Sbjct: 120 PPAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTGNPACGLKLSAFAAVSSVLSGLLG 179
Query: 188 MVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAWGSFTCCMAASVTTLNSYTKTVIE 247
MVAHMMY+QVFQ TV+LGPEDWRPH W+YGW+F +AW SFTCCMA++VTT N+YT+ V+E
Sbjct: 180 MVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAWLSFTCCMASAVTTFNTYTRMVLE 239
Query: 248 FRHKRKVFEQGYREEP 263
F+ K + ++E P
Sbjct: 240 FKCKH---SKSFKENP 252
>gi|123317881 germ cell associated 1 isoform 4 [Homo sapiens]
Length = 362
Score = 245 bits (625), Expect = 5e-65
Identities = 124/279 (44%), Positives = 174/279 (62%), Gaps = 40/279 (14%)
Query: 8 RALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGCGQGGRANCPNSGANATANGTAAP 67
R LL+ L++L+L F+TT+ L+ +W GTQ+VPKP C +G A C + + + +
Sbjct: 27 RTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMPVSLDGDTNTST 86
Query: 68 AAAAAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEEL-------------- 113
Y+WETGDDRF FR+F +G+W SCEE +
Sbjct: 87 QEVVQ--------------YNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQF 132
Query: 114 ---------SGLGEKCRSFIDLAPASEKGVLWLSVVSEVLYILLLVVGFSLMCLELFHSS 164
+ GE+CRSFI+L P +++ +LWLS+ +++ YI L + F L+ +L +
Sbjct: 133 RALRSSGTAAAKGERCRSFIELTPPAKREILWLSLGTQITYIGLQFISFLLLLTDLLLTG 192
Query: 165 NVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAW 224
N GLKL+AFAAV +VLSGLLGMVAHMMY+QVFQ TV+LGPEDWRPH W+YGW+F +AW
Sbjct: 193 NPACGLKLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGWAFYMAW 252
Query: 225 GSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEP 263
SFTCCMA++VTT N+YT+ V+EF+ K + ++E P
Sbjct: 253 LSFTCCMASAVTTFNTYTRMVLEFKCKH---SKSFKENP 288
>gi|169211272 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 243 bits (619), Expect = 2e-64
Identities = 121/271 (44%), Positives = 174/271 (64%), Gaps = 15/271 (5%)
Query: 1 MKTSRRGRALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGC-GQGGRANCPNSGANA 59
M +++ +ALL + + LAL F+ TA +++HWC+GT+RV KP C Q G +C + +
Sbjct: 1 MDRAKQQQALLLLPV-CLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDN 59
Query: 60 TANGTAAPAAAAAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEELSGLGEK 119
++NG + A LY WE GDD+F+ R FH G+W SCEE L+G EK
Sbjct: 60 SSNGRMDNNSQAV-------------LYIWELGDDKFIQRGFHVGLWQSCEESLNGEDEK 106
Query: 120 CRSFIDLAPASEKGVLWLSVVSEVLYILLLVVGFSLMCLELFHSSNVIDGLKLNAFAAVF 179
CRSF + PA E+GVLWLS+ EVL I+L++ L+ + S L+++A A+F
Sbjct: 107 CRSFRSVVPAEEQGVLWLSIGGEVLDIVLILTSAILLGSRVSCRSPGFHWLRVDALVAIF 166
Query: 180 TVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAWGSFTCCMAASVTTLN 239
VL+GLLGMVAHMMYT +FQ+TV+LGPEDW+P +WDYGWS+CLAWGSF C+A SV+ ++
Sbjct: 167 MVLAGLLGMVAHMMYTTIFQITVNLGPEDWKPQTWDYGWSYCLAWGSFALCLAVSVSAMS 226
Query: 240 SYTKTVIEFRHKRKVFEQGYREEPTFIDPEA 270
+T +EF K++ + +F++PEA
Sbjct: 227 RFTAARLEFTEKQQAQNGSRHSQHSFLEPEA 257
>gi|169211660 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 243 bits (619), Expect = 2e-64
Identities = 121/271 (44%), Positives = 174/271 (64%), Gaps = 15/271 (5%)
Query: 1 MKTSRRGRALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGC-GQGGRANCPNSGANA 59
M +++ +ALL + + LAL F+ TA +++HWC+GT+RV KP C Q G +C + +
Sbjct: 1 MDRAKQQQALLLLPV-CLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDN 59
Query: 60 TANGTAAPAAAAAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEELSGLGEK 119
++NG + A LY WE GDD+F+ R FH G+W SCEE L+G EK
Sbjct: 60 SSNGRMDNNSQAV-------------LYIWELGDDKFIQRGFHVGLWQSCEESLNGEDEK 106
Query: 120 CRSFIDLAPASEKGVLWLSVVSEVLYILLLVVGFSLMCLELFHSSNVIDGLKLNAFAAVF 179
CRSF + PA E+GVLWLS+ EVL I+L++ L+ + S L+++A A+F
Sbjct: 107 CRSFRSVVPAEEQGVLWLSIGGEVLDIVLILTSAILLGSRVSCRSPGFHWLRVDALVAIF 166
Query: 180 TVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAWGSFTCCMAASVTTLN 239
VL+GLLGMVAHMMYT +FQ+TV+LGPEDW+P +WDYGWS+CLAWGSF C+A SV+ ++
Sbjct: 167 MVLAGLLGMVAHMMYTTIFQITVNLGPEDWKPQTWDYGWSYCLAWGSFALCLAVSVSAMS 226
Query: 240 SYTKTVIEFRHKRKVFEQGYREEPTFIDPEA 270
+T +EF K++ + +F++PEA
Sbjct: 227 RFTAARLEFTEKQQAQNGSRHSQHSFLEPEA 257
>gi|169210878 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 243 bits (619), Expect = 2e-64
Identities = 121/271 (44%), Positives = 174/271 (64%), Gaps = 15/271 (5%)
Query: 1 MKTSRRGRALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGC-GQGGRANCPNSGANA 59
M +++ +ALL + + LAL F+ TA +++HWC+GT+RV KP C Q G +C + +
Sbjct: 1 MDRAKQQQALLLLPV-CLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDN 59
Query: 60 TANGTAAPAAAAAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEELSGLGEK 119
++NG + A LY WE GDD+F+ R FH G+W SCEE L+G EK
Sbjct: 60 SSNGRMDNNSQAV-------------LYIWELGDDKFIQRGFHVGLWQSCEESLNGEDEK 106
Query: 120 CRSFIDLAPASEKGVLWLSVVSEVLYILLLVVGFSLMCLELFHSSNVIDGLKLNAFAAVF 179
CRSF + PA E+GVLWLS+ EVL I+L++ L+ + S L+++A A+F
Sbjct: 107 CRSFRSVVPAEEQGVLWLSIGGEVLDIVLILTSAILLGSRVSCRSPGFHWLRVDALVAIF 166
Query: 180 TVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAWGSFTCCMAASVTTLN 239
VL+GLLGMVAHMMYT +FQ+TV+LGPEDW+P +WDYGWS+CLAWGSF C+A SV+ ++
Sbjct: 167 MVLAGLLGMVAHMMYTTIFQITVNLGPEDWKPQTWDYGWSYCLAWGSFALCLAVSVSAMS 226
Query: 240 SYTKTVIEFRHKRKVFEQGYREEPTFIDPEA 270
+T +EF K++ + +F++PEA
Sbjct: 227 RFTAARLEFTEKQQAQNGSRHSQHSFLEPEA 257
>gi|123317847 germ cell associated 1 isoform 1 [Homo sapiens]
Length = 285
Score = 102 bits (255), Expect = 4e-22
Identities = 50/126 (39%), Positives = 74/126 (58%), Gaps = 14/126 (11%)
Query: 8 RALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGCGQGGRANCPNSGANATANGTAAP 67
R LL+ L++L+L F+TT+ L+ +W GTQ+VPKP C +G A C + + + +
Sbjct: 14 RTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMPVSLDGDTNTST 73
Query: 68 AAAAAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEELSGLGEKCRSFIDLA 127
Y+WETGDDRF FR+F +G+W SCEE + GE+CRSFI+L
Sbjct: 74 QEVVQ--------------YNWETGDDRFSFRSFRSGMWLSCEETVEEPGERCRSFIELT 119
Query: 128 PASEKG 133
P +++G
Sbjct: 120 PPAKRG 125
>gi|123317872 germ cell associated 1 isoform 3 [Homo sapiens]
Length = 321
Score = 91.3 bits (225), Expect = 1e-18
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 37/149 (24%)
Query: 8 RALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGCGQGGRANCPNSGANATANGTAAP 67
R LL+ L++L+L F+TT+ L+ +W GTQ+VPKP C +G A C + + + +
Sbjct: 27 RTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMPVSLDGDTNTST 86
Query: 68 AAAAAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEEL-------------- 113
Y+WETGDDRF FR+F +G+W SCEE +
Sbjct: 87 QEVVQ--------------YNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQF 132
Query: 114 ---------SGLGEKCRSFIDLAPASEKG 133
+ GE+CRSFI+L P +++G
Sbjct: 133 RALRSSGTAAAKGERCRSFIELTPPAKRG 161
>gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Homo
sapiens]
Length = 315
Score = 40.8 bits (94), Expect = 0.002
Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 27/193 (13%)
Query: 102 HTGIWYSC--EEELSGLGEKCRSFIDLAPASEKGVLWL------SVVSEVLYILLLVVGF 153
H+G+W +C E G+ +K F + A + +L S V +L + LL G
Sbjct: 60 HSGLWRTCCLEGAFRGVCKKIDHFPEDADYEQDTAEYLLRAVRASSVFPILSVTLLFFGG 119
Query: 154 SLMCLELFHSS--NVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRP 211
+ FH S NVI A +F V +GL ++ ++Y ++ + G R
Sbjct: 120 LCVAASEFHRSRHNVI------LSAGIFFVSAGLSNIIGIIVY-----ISANAGDPGQRD 168
Query: 212 H--SWDYGWSFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDPE 269
S+ YGWSF SF V ++ Y + + R K + ++ TF
Sbjct: 169 SKKSYSYGWSFYFGAFSFIIAEIVGVVAVHIYIEKHQQLRAKS---HSEFLKKSTFARLP 225
Query: 270 AIKY-FRERMEKR 281
+Y FR R R
Sbjct: 226 PYRYRFRRRSSSR 238
>gi|21361975 voltage-dependent calcium channel gamma-7 subunit [Homo
sapiens]
Length = 275
Score = 39.3 bits (90), Expect = 0.005
Identities = 44/176 (25%), Positives = 64/176 (36%), Gaps = 20/176 (11%)
Query: 102 HTGIWYSCEEELSGLGEKCRSFIDLAPASEKGVLWLSVVSEVLYILLLVVGFSLMCLELF 161
H G+W C G S L P L +L + F ++ L L
Sbjct: 55 HAGLWRVCFFAGREKGRCVASEYFLEPEIN---LVTENTENILKTVRTATPFPMVSLFLV 111
Query: 162 HSSNVIDGLK--------LNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPH- 212
++ VI + L + +F +LSGL +V ++Y V P +
Sbjct: 112 FTAFVISNIGHIRPQRTILAFVSGIFFILSGLSLVVGLVLYISSINDEVMNRPSSSEQYF 171
Query: 213 SWDYGWSFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDP 268
+ YGWSF A SF A V ++ +TK E E+ YR P F P
Sbjct: 172 HYRYGWSFAFAASSFLLKEGAGVMSVYLFTKRYAE--------EEMYRPHPAFYRP 219
>gi|50345279 claudin 18 isoform 2 [Homo sapiens]
Length = 261
Score = 38.1 bits (87), Expect = 0.011
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 102 HTGIWYSCEEELSGLGEKCRSFIDL--APASEKGVLWLSVVSEVL-YILLLVVGFSLMCL 158
+ G+W SC E SG E CR + L PA + V L +V VL I LLV F+L C+
Sbjct: 46 YQGLWRSCVRESSGFTE-CRGYFTLLGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCI 104
Query: 159 ELFHSSNVIDGLKLN--AFAAVFTVLSGL-----LGMVAHMMYTQVFQVTVSL 204
+ ++ D K N + + ++SGL + + A+M+ T + T ++
Sbjct: 105 RI---GSMEDSAKANMTLTSGIMFIVSGLCAIAGVSVFANMLVTNFWMSTANM 154
>gi|10863887 claudin 1 [Homo sapiens]
Length = 211
Score = 37.7 bits (86), Expect = 0.014
Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 20/170 (11%)
Query: 82 PGGALYSWETGDDRFLFRNFHTGIWYSCEEELSGLGEKCRSFIDLAPASE-----KGVLW 136
P +YS+ GD+ + + G+W SC + +G + C+ F L S + ++
Sbjct: 28 PQWRIYSY-AGDNIVTAQAMYEGLWMSCVSQSTGQIQ-CKVFDSLLNLSSTLQATRALMV 85
Query: 137 LSVVSEVLYILLLVVGFSLM-CLELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYT 195
+ ++ V+ I + VG M CLE + + +++ +L+GL +VA Y
Sbjct: 86 VGILLGVIAIFVATVGMKCMKCLE----DDEVQKMRMAVIGGAIFLLAGLAILVATAWYG 141
Query: 196 Q--VFQVTVSLGPEDWR---PHSWDYGW---SFCLAWGSFTCCMAASVTT 237
V + + P + R + GW S CL G+ CC TT
Sbjct: 142 NRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTT 191
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 37.7 bits (86), Expect = 0.014
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 43 GCGQGGRANCPNS-GANATANGTAAPAAAAAAATASGNGPPG-GALYSWETGDD-RFLFR 99
G G GG ++ P + A AT+ AA AAAAAAA A+G G P GA + + GD+ R FR
Sbjct: 149 GGGGGGSSSSPAATSAAATSAAAAAAAAAAAAAAAAGAGAPSVGAAGAADGGDETRLPFR 208
Score = 29.3 bits (64), Expect = 5.1
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 43 GCGQGGRANCPNSGANATANGTAAPAAAAAAATASGNGPPGGA 85
G G GG +S + A + A AAAAAAA A+ GA
Sbjct: 144 GGGAGGGGGGGSSSSPAATSAAATSAAAAAAAAAAAAAAAAGA 186
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 36.2 bits (82), Expect = 0.042
Identities = 25/53 (47%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 42 PGC-GQGGRANCPNSG-ANATANGTAAPAAAAAAATASGNGPPGGALYSWETG 92
PG G GG P G A A A AA AAAAAAA A G GG W G
Sbjct: 224 PGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPG 276
Score = 28.5 bits (62), Expect = 8.7
Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 40 PKPGCGQGGRANCPNSGANATANGTAAPAAAAAAATASGNGPPGGAL 86
P P G G A G G AA AAAAAAA A+ G L
Sbjct: 218 PSPA-GAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGL 263
>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
Length = 525
Score = 36.2 bits (82), Expect = 0.042
Identities = 24/47 (51%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 42 PGCGQG-GRANCPNSGANATA-----NGTAAPAAAAAAATASGNGPP 82
PG G G G P ANA A N AA AAAAAAA A G PP
Sbjct: 14 PGVGVGPGTGGSPGPSANAAATPAPGNAAAAAAAAAAAAAAPGPTPP 60
Score = 35.0 bits (79), Expect = 0.093
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 13/52 (25%)
Query: 45 GQGGRANCP-----------NSGANATANGTAAP--AAAAAAATASGNGPPG 83
G GGRA+CP + G +A A T AP AAAAAAA A+ PG
Sbjct: 5 GSGGRASCPPGVGVGPGTGGSPGPSANAAATPAPGNAAAAAAAAAAAAAAPG 56
>gi|4505907 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 35.8 bits (81), Expect = 0.054
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 103 TGIWYSCEEELSGLGEKCRSFIDLAPASEKGVLWLSVVSEVLYILLLVVGFSLMCLELFH 162
T +W +C SG C S + +E WL V + + ++ FS++ L LF
Sbjct: 36 TDLWQNCSTSSSGNVHHCFS----SSPNE----WLQSVQATMILSII---FSILSLFLFF 84
Query: 163 SSNVIDGLKLNAF--AAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHS-WDYGWS 219
+ K F +F +L+GL M A +YT + +W +S + YG++
Sbjct: 85 CQ-LFTLTKGGRFYITGIFQILAGLCVMSAAAIYT--------VRHPEWHLNSDYSYGFA 135
Query: 220 FCLAWGSFTCCMAASV 235
+ LAW +F + + V
Sbjct: 136 YILAWVAFPLALLSGV 151
>gi|24430165 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 35.8 bits (81), Expect = 0.054
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 103 TGIWYSCEEELSGLGEKCRSFIDLAPASEKGVLWLSVVSEVLYILLLVVGFSLMCLELFH 162
T +W +C SG C S + +E WL V + + ++ FS++ L LF
Sbjct: 36 TDLWQNCSTSSSGNVHHCFS----SSPNE----WLQSVQATMILSII---FSILSLFLFF 84
Query: 163 SSNVIDGLKLNAF--AAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHS-WDYGWS 219
+ K F +F +L+GL M A +YT + +W +S + YG++
Sbjct: 85 CQ-LFTLTKGGRFYITGIFQILAGLCVMSAAAIYT--------VRHPEWHLNSDYSYGFA 135
Query: 220 FCLAWGSFTCCMAASV 235
+ LAW +F + + V
Sbjct: 136 YILAWVAFPLALLSGV 151
>gi|24430163 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 35.8 bits (81), Expect = 0.054
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 103 TGIWYSCEEELSGLGEKCRSFIDLAPASEKGVLWLSVVSEVLYILLLVVGFSLMCLELFH 162
T +W +C SG C S + +E WL V + + ++ FS++ L LF
Sbjct: 36 TDLWQNCSTSSSGNVHHCFS----SSPNE----WLQSVQATMILSII---FSILSLFLFF 84
Query: 163 SSNVIDGLKLNAF--AAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHS-WDYGWS 219
+ K F +F +L+GL M A +YT + +W +S + YG++
Sbjct: 85 CQ-LFTLTKGGRFYITGIFQILAGLCVMSAAAIYT--------VRHPEWHLNSDYSYGFA 135
Query: 220 FCLAWGSFTCCMAASV 235
+ LAW +F + + V
Sbjct: 136 YILAWVAFPLALLSGV 151
>gi|7705961 claudin 18 isoform 1 [Homo sapiens]
Length = 261
Score = 35.8 bits (81), Expect = 0.054
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 102 HTGIWYSCEEELSGLGEKCRSFIDL--APASEKGVLWLSVVSEVL-YILLLVVGFSLMCL 158
+ G+W SC + SG E CR + + PA + V L +V VL I LLV F+L C+
Sbjct: 46 YEGLWRSCVRQSSGFTE-CRPYFTILGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCI 104
Query: 159 ELFHSSNVIDGLKLN--AFAAVFTVLSGL-----LGMVAHMMYTQVFQVTVSL 204
+ ++ D K N + + ++SGL + + A+M+ T + T ++
Sbjct: 105 RI---GSMEDSAKANMTLTSGIMFIVSGLCAIAGVSVFANMLVTNFWMSTANM 154
>gi|22027551 voltage-dependent calcium channel gamma-5 subunit
isoform a [Homo sapiens]
Length = 275
Score = 35.8 bits (81), Expect = 0.054
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 20/178 (11%)
Query: 100 NFHTGIWYSCEEELSGLGEKCRSF-------IDLAPASEKGVLWLSVVSEVLYILLLVVG 152
+ H+G+W C L+G E+ R F ++ SE V L ++ L+ +
Sbjct: 53 SLHSGLWRVCF--LAG-EERGRCFTIEYVMPMNTQLTSESTVNVLKMIRSATPFPLVSLF 109
Query: 153 FSLMCLELFHSSNVIDGLKLNAFAA-VFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRP 211
F + L + ++ + AF + +F +LSGL +V ++Y + +D
Sbjct: 110 FMFIGFILNNIGHIRPHRTILAFVSGIFFILSGLSLVVGLVLYISSINDEMLNRTKDAET 169
Query: 212 H-SWDYGWSFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDP 268
+ ++ YGWSF A SF +A V ++ + KR E YR P F P
Sbjct: 170 YFNYKYGWSFAFAAISFLLTESAGVMSVYLFM--------KRYTAEDMYRPHPGFYRP 219
>gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Homo
sapiens]
Length = 323
Score = 35.4 bits (80), Expect = 0.071
Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 21/160 (13%)
Query: 102 HTGIWYSC--EEELSGLGEKCRSF-------IDLAPASEKGVLWLSVVSEVLYILLLVVG 152
H+G+W +C E GL ++ F D A + V S+ + ILL + G
Sbjct: 60 HSGLWRTCCLEGNFKGLCKQIDHFPEDADYEADTAEYFLRAVRASSIFPILSVILLFMGG 119
Query: 153 FSLMCLELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPH 212
+ E + + + + A +F V +GL ++ ++Y S D + +
Sbjct: 120 LCIAASEFYKTRH-----NIILSAGIFFVSAGLSNIIGIIVYISANAGDPS--KSDSKKN 172
Query: 213 SWDYGWSFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKR 252
S+ YGWSF SF V ++ + RHK+
Sbjct: 173 SYSYGWSFYFGALSFIIAEMVGVLAVHMFID-----RHKQ 207
>gi|66730481 neuregulin 3 [Homo sapiens]
Length = 696
Score = 35.0 bits (79), Expect = 0.093
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 46 QGGRANCPNSGANATANGTAAPAAAAAAATASGNGPPGG 84
+G A P A+A A AAAAAA A+G GP GG
Sbjct: 3 EGAAAASPPGAASAAAASAEEGTAAAAAAAAAGGGPDGG 41
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 34.7 bits (78), Expect = 0.12
Identities = 19/41 (46%), Positives = 20/41 (48%)
Query: 43 GCGQGGRANCPNSGANATANGTAAPAAAAAAATASGNGPPG 83
G G GG +GA G A AAAAAAA A G G G
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGG 299
Score = 34.3 bits (77), Expect = 0.16
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 43 GCGQGGRANCPNSGANATANGTAAPAAAAAAATASGNGPPGGA 85
G G GG A +GA A A AA AAAAAAA G G GG+
Sbjct: 264 GGGGGGGAGAGGAGAGAVA---AAAAAAAAAAGGGGGGGYGGS 303
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 43 GCGQGGRANCPNSGANATANGTAAPA-AAAAAATASGNGPPGGALY 87
G G GG + G A A G A A AAAAAA A+ G GG Y
Sbjct: 255 GGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGY 300
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 34.7 bits (78), Expect = 0.12
Identities = 19/41 (46%), Positives = 20/41 (48%)
Query: 43 GCGQGGRANCPNSGANATANGTAAPAAAAAAATASGNGPPG 83
G G GG +GA G A AAAAAAA A G G G
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGG 299
Score = 34.3 bits (77), Expect = 0.16
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 43 GCGQGGRANCPNSGANATANGTAAPAAAAAAATASGNGPPGGA 85
G G GG A +GA A A AA AAAAAAA G G GG+
Sbjct: 264 GGGGGGGAGAGGAGAGAVA---AAAAAAAAAAGGGGGGGYGGS 303
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 43 GCGQGGRANCPNSGANATANGTAAPA-AAAAAATASGNGPPGGALY 87
G G GG + G A A G A A AAAAAA A+ G GG Y
Sbjct: 255 GGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGY 300
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 34.7 bits (78), Expect = 0.12
Identities = 19/41 (46%), Positives = 20/41 (48%)
Query: 43 GCGQGGRANCPNSGANATANGTAAPAAAAAAATASGNGPPG 83
G G GG +GA G A AAAAAAA A G G G
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGG 299
Score = 34.3 bits (77), Expect = 0.16
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 43 GCGQGGRANCPNSGANATANGTAAPAAAAAAATASGNGPPGGA 85
G G GG A +GA A A AA AAAAAAA G G GG+
Sbjct: 264 GGGGGGGAGAGGAGAGAVA---AAAAAAAAAAGGGGGGGYGGS 303
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 43 GCGQGGRANCPNSGANATANGTAAPA-AAAAAATASGNGPPGGALY 87
G G GG + G A A G A A AAAAAA A+ G GG Y
Sbjct: 255 GGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGY 300
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 33.9 bits (76), Expect = 0.21
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 18 LALLFATTAFLTTHWCQGTQRVPKPGCGQGGRA------NCPNSGANATANGTAAPAAAA 71
+A A A + C+ P P A P S A A A AA AAAA
Sbjct: 72 VAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAA 131
Query: 72 AAATASGNGPPGGA 85
AA+++ G GP G A
Sbjct: 132 AASSSGGPGPAGPA 145
Score = 28.5 bits (62), Expect = 8.7
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 58 NATANGTAAPAAAAAAATASGNGPPG 83
N G AA AAAAAAA A+G G G
Sbjct: 32 NKNMEGAAAAAAAAAAAAAAGAGGGG 57
>gi|32479521 dishevelled 1 [Homo sapiens]
Length = 670
Score = 33.1 bits (74), Expect = 0.35
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 45 GQGGRANCPNSGANATANGTAAPAAAAAAATASGNGPPGG 84
GQ R + P S A+ATA G P A T G GPPGG
Sbjct: 597 GQLSRGSSPRSQASATAPGLPPPHPTTKAYTVVG-GPPGG 635
>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
sapiens]
Length = 307
Score = 33.1 bits (74), Expect = 0.35
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 43 GCGQGGRANCPNSGANATANGTAAPAAAAAAATASGNGPPGGA 85
G G+GGR NA A+ +AA AAAA T G G A
Sbjct: 262 GGGRGGREAAATVHGNAAASSSAAARGAAAATTIDGGGKEDAA 304
>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
sapiens]
Length = 325
Score = 33.1 bits (74), Expect = 0.35
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 43 GCGQGGRANCPNSGANATANGTAAPAAAAAAATASGNGPPGGA 85
G G+GGR NA A+ +AA AAAA T G G A
Sbjct: 280 GGGRGGREAAATVHGNAAASSSAAARGAAAATTIDGGGKEDAA 322
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,804,330
Number of Sequences: 37866
Number of extensions: 657386
Number of successful extensions: 4931
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 4445
Number of HSP's gapped (non-prelim): 403
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.