Search of human proteins with 157502193

Search of human proteins with 157502193

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|157502193 proteasome 26S non-ATPase subunit 13 isoform 1
[Homo sapiens]
         (376 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|157502193 proteasome 26S non-ATPase subunit 13 isoform 1 [Hom...   753   0.0  
gi|157502195 proteasome 26S non-ATPase subunit 13 isoform 2 [Hom...   661   0.0  
gi|7705330 COP9 complex subunit 7a [Homo sapiens]                      39   0.006
gi|23397429 eukaryotic translation initiation factor 3, subunit ...    37   0.029
gi|110346438 FERM and PDZ domain containing 2 isoform 1 [Homo sa...    37   0.029
gi|38373690 COP9 signalosome subunit 4 [Homo sapiens]                  31   2.1  
gi|110346436 FERM and PDZ domain containing 2 isoform 3 [Homo sa...    31   2.1  
gi|46358428 selective LIM binding factor homolog [Homo sapiens]        30   2.7  
gi|219842262 COP9 constitutive photomorphogenic homolog subunit ...    30   3.5  
gi|4759264 COP9 constitutive photomorphogenic homolog subunit 2 ...    30   3.5  
gi|82880656 coiled-coil domain containing 46 isoform a [Homo sap...    30   4.6  
gi|239740963 PREDICTED: similar to N-ethylmaleimide-sensitive fa...    29   6.0  
gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens]          29   6.0  
gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens]         29   7.9  
gi|40548372 tetratricopeptide repeat domain 15 [Homo sapiens]          29   7.9  
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]    29   7.9  
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]    29   7.9  
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]    29   7.9  
gi|40255119 RAS and EF-hand domain containing [Homo sapiens]           29   7.9  
gi|6679189 transmembrane emp24 domain containing 3 [Homo sapiens]      29   7.9  

>gi|157502193 proteasome 26S non-ATPase subunit 13 isoform 1 [Homo
           sapiens]
          Length = 376

 Score =  753 bits (1944), Expect = 0.0
 Identities = 376/376 (100%), Positives = 376/376 (100%)

Query: 1   MKDVPGFLQQSQNSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 60
           MKDVPGFLQQSQNSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY
Sbjct: 1   MKDVPGFLQQSQNSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 60

Query: 61  ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 120
           ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA
Sbjct: 61  ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA 120

Query: 121 LKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180
           LKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL
Sbjct: 121 LKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180

Query: 181 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAF 240
           GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAF
Sbjct: 181 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAF 240

Query: 241 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA 300
           NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA
Sbjct: 241 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA 300

Query: 301 KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDV 360
           KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDV
Sbjct: 301 KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDV 360

Query: 361 KSMEMLVEHQAHDILT 376
           KSMEMLVEHQAHDILT
Sbjct: 361 KSMEMLVEHQAHDILT 376


>gi|157502195 proteasome 26S non-ATPase subunit 13 isoform 2 [Homo
           sapiens]
          Length = 378

 Score =  661 bits (1706), Expect = 0.0
 Identities = 344/388 (88%), Positives = 351/388 (90%), Gaps = 22/388 (5%)

Query: 1   MKDVPGFLQQSQNSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY 60
           MKDVPGFLQQSQNSGPGQPAVWHRLEELYTK     L++ +           G  L  ++
Sbjct: 1   MKDVPGFLQQSQNSGPGQPAVWHRLEELYTKNFMKTLSVNL---------NTGKSLSSVF 51

Query: 61  ENFISE------------FEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSD 108
            +F +E            F  RVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSD
Sbjct: 52  -HFENECIDARRCSKAGGFYFRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSD 110

Query: 109 EAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGN 168
           EAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGN
Sbjct: 111 EAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGN 170

Query: 169 HASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNT 228
           HASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNT
Sbjct: 171 HASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNT 230

Query: 229 DRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANH 288
           DRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANH
Sbjct: 231 DRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANH 290

Query: 289 RQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKG 348
           RQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKG
Sbjct: 291 RQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKG 350

Query: 349 MKDRLEFWCTDVKSMEMLVEHQAHDILT 376
           MKDRLEFWCTDVKSMEMLVEHQAHDILT
Sbjct: 351 MKDRLEFWCTDVKSMEMLVEHQAHDILT 378


>gi|7705330 COP9 complex subunit 7a [Homo sapiens]
          Length = 275

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 9/162 (5%)

Query: 209 GVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQL 268
           GV+ FGELL  P +  L  +D       L  F  G    +          P L   +   
Sbjct: 39  GVYVFGELLDMPNVRELAESDFASTFRLLTVFAYGTYADYLAEAR---NLPPLTEAQKNK 95

Query: 269 LRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVD 328
           LR + ++ L       P     +  E +A      V ++E LV++A+   +++GS+D+ +
Sbjct: 96  LRHLSVVTLAAKVKCIPY---AVLLEALALR---NVRQLEDLVIEAVYADVLRGSLDQRN 149

Query: 329 KRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQ 370
           +R+ + +   R +  Q +  +   L+ WC   + +   +E Q
Sbjct: 150 QRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQ 191


>gi|23397429 eukaryotic translation initiation factor 3, subunit M
           [Homo sapiens]
          Length = 374

 Score = 37.0 bits (84), Expect = 0.029
 Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 267 QLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDE 326
           Q + K++LL  M M       +++++F+ + +  +I  ++VE  V+ A+   +V   ID+
Sbjct: 272 QNMAKMRLLTFMGMA----VENKEISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQ 327

Query: 327 VDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356
             ++V ++    R    QQ + + D L  W
Sbjct: 328 TQRKVVVSHSTHRTFGKQQWQQLYDTLNAW 357


>gi|110346438 FERM and PDZ domain containing 2 isoform 1 [Homo
           sapiens]
          Length = 1287

 Score = 37.0 bits (84), Expect = 0.029
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 18/142 (12%)

Query: 208 EGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNS--------GNVER-----FQTLKTA 254
           E +++   L    +LE LRN    +++    A  S        G V       F+  +  
Sbjct: 31  EEIWSLLFLAAEQLLEDLRNDSSDYVVCPWSALLSAAGSLSFQGRVSHIEAAPFKAPELL 90

Query: 255 WGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKA 314
            GQ  D   + +Q L+  + L  + +T      HR+ T + + ++ ++   EV +    A
Sbjct: 91  QGQSEDEQPDASQPLQLCEPLHSILLTMCEDQPHRRCTLQSVLEACRVHEKEVSVYPAPA 150

Query: 315 -----LSVGLVKGSIDEVDKRV 331
                  VGLV G+I EV+KRV
Sbjct: 151 GLHIRRLVGLVLGTISEVEKRV 172


>gi|38373690 COP9 signalosome subunit 4 [Homo sapiens]
          Length = 406

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 288 HRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVH 332
           +  +TFEE+    +I   + E +  + ++ G + G ID++D  VH
Sbjct: 316 YNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVH 360


>gi|110346436 FERM and PDZ domain containing 2 isoform 3 [Homo
           sapiens]
          Length = 1309

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 280 MTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKA-----LSVGLVKGSIDEVDKRV 331
           +T      HR+ T + + ++ ++   EV +    A       VGLV G+I EV+KRV
Sbjct: 138 LTMCEDQPHRRCTLQSVLEACRVHEKEVSVYPAPAGLHIRRLVGLVLGTISEVEKRV 194


>gi|46358428 selective LIM binding factor homolog [Homo sapiens]
          Length = 1749

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 219 HPVLESLRNTDRQWLIDTLYAFNSGNVERFQ 249
           HP LE LR +  QWL+DT     +G ++  Q
Sbjct: 733 HPALEKLRRSYYQWLMDTQQEERAGELQESQ 763


>gi|219842262 COP9 constitutive photomorphogenic homolog subunit 2
           isoform 2 [Homo sapiens]
          Length = 450

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 17/134 (12%)

Query: 239 AFNSGNVERFQT-LKTAWGQ---QPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFE 294
           A+ + ++  F+  LKT        P +  +  +LLR I+   L+++   +P     + F 
Sbjct: 324 AYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLI--KPYTRIHIPF- 380

Query: 295 EIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMK-DRL 353
            I+K   I V +VE L+++ +    + G ID+V++ +         LD Q+  G +   L
Sbjct: 381 -ISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLE--------LDHQKRGGARYTAL 431

Query: 354 EFWCTDVKSMEMLV 367
           + W   + S+   V
Sbjct: 432 DKWTNQLNSLNQAV 445


>gi|4759264 COP9 constitutive photomorphogenic homolog subunit 2
           isoform 1 [Homo sapiens]
          Length = 443

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 17/134 (12%)

Query: 239 AFNSGNVERFQT-LKTAWGQ---QPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFE 294
           A+ + ++  F+  LKT        P +  +  +LLR I+   L+++   +P     + F 
Sbjct: 317 AYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLI--KPYTRIHIPF- 373

Query: 295 EIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMK-DRL 353
            I+K   I V +VE L+++ +    + G ID+V++ +         LD Q+  G +   L
Sbjct: 374 -ISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLE--------LDHQKRGGARYTAL 424

Query: 354 EFWCTDVKSMEMLV 367
           + W   + S+   V
Sbjct: 425 DKWTNQLNSLNQAV 438


>gi|82880656 coiled-coil domain containing 46 isoform a [Homo
           sapiens]
          Length = 955

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 9/127 (7%)

Query: 257 QQPDLAANEAQLLRKIQLLC--LMEMTFTRPANHRQLTF--EEIAKSAKI--TVNEVELL 310
           Q+  L   +A+L R  Q+ C  L E+   R   H++      +  ++ K+  T  + ++ 
Sbjct: 430 QRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADIN 489

Query: 311 VMK---ALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLV 367
           ++K   ALS       I+E+++ V     Q +  +LQ+ + ++D+   +  +   ++ + 
Sbjct: 490 LLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIY 549

Query: 368 EHQAHDI 374
           E +AHD+
Sbjct: 550 EKKAHDL 556


>gi|239740963 PREDICTED: similar to N-ethylmaleimide-sensitive
           factor [Homo sapiens]
          Length = 405

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 218 MHPVLESLRNTDRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQL 274
           + P LE+ RN   +W+ + +    S  +++  + K  WG  P L   E+   RK+ L
Sbjct: 339 LDPALEATRNVSMRWVDNAVTVEFSPCLKQLSSPKPKWG-SPSLEGYESNERRKLNL 394


>gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens]
          Length = 4646

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 25/137 (18%)

Query: 245  VERFQTLKTAWGQ-------------QPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQL 291
            +E  Q LK  W +             QP ++    +L + +  L     +F  PA  RQ 
Sbjct: 1323 LEELQDLKGVWSELSKVWEQIDQMKEQPWVSVQPRKLRQNLDALLNQLKSF--PARLRQY 1380

Query: 292  TFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKD 351
               E  +       ++ +LV++  S  L      ++ KR+H+ WV    L L QI     
Sbjct: 1381 ASYEFVQRLLKGYMKINMLVIELKSEALKDRHWKQLMKRLHVNWVVSE-LTLGQI----- 1434

Query: 352  RLEFWCTDVKSMEMLVE 368
                W  D++  E +V+
Sbjct: 1435 ----WDVDLQKNEAIVK 1447


>gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens]
          Length = 2481

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 17   GQPAVWHRLEELYTKKLWHQLTLQVLDFVQDP-CFAQGDGLIKLYENFISEFEHRVNPLS 75
            G   V+ ++ E  T   +HQL LQ+ +   +P C  +  G + L    +  FE  V    
Sbjct: 1002 GLGGVYQQMGEYDTALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAV---V 1058

Query: 76   LVEIILHVVRQMTD---PNVALTFLEKTREKVKSSDEAVI 112
              E  L +  QM D     V+ + L +T   +++  +AV+
Sbjct: 1059 YQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVM 1098


>gi|40548372 tetratricopeptide repeat domain 15 [Homo sapiens]
          Length = 735

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 116 TAIGALKLNIGDLQVTKETIEDVEEMLNNLPGV 148
           + IG + L IGD++  ++  +DVE++   L G+
Sbjct: 584 SGIGRISLQIGDIKTAEKYFQDVEKVTQKLDGL 616


>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 7/117 (5%)

Query: 99  KTREKVKSSDEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYD- 157
           K + ++K+ +  ++  K    +      +L   K+TIE+ EE L N   +       Y+ 
Sbjct: 716 KQQWEMKTEEADLLQTKLQQSSYHKQQEELDALKKTIEESEETLKNTKEIQRKAEEKYEV 775

Query: 158 LSSKYYQTIGNHASYYKDALRFLGC------VDIKDLPVSEQQERAFTLGLAGLLGE 208
           L +K            KDA + L C         K +   +Q+  A TL L  L  E
Sbjct: 776 LENKMKNAEAERERELKDAQKKLDCAKTKADASSKKMKEKQQEVEAITLELEELKRE 832


>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 7/117 (5%)

Query: 99  KTREKVKSSDEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYD- 157
           K + ++K+ +  ++  K    +      +L   K+TIE+ EE L N   +       Y+ 
Sbjct: 716 KQQWEMKTEEADLLQTKLQQSSYHKQQEELDALKKTIEESEETLKNTKEIQRKAEEKYEV 775

Query: 158 LSSKYYQTIGNHASYYKDALRFLGC------VDIKDLPVSEQQERAFTLGLAGLLGE 208
           L +K            KDA + L C         K +   +Q+  A TL L  L  E
Sbjct: 776 LENKMKNAEAERERELKDAQKKLDCAKTKADASSKKMKEKQQEVEAITLELEELKRE 832


>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 7/117 (5%)

Query: 99  KTREKVKSSDEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYD- 157
           K + ++K+ +  ++  K    +      +L   K+TIE+ EE L N   +       Y+ 
Sbjct: 716 KQQWEMKTEEADLLQTKLQQSSYHKQQEELDALKKTIEESEETLKNTKEIQRKAEEKYEV 775

Query: 158 LSSKYYQTIGNHASYYKDALRFLGC------VDIKDLPVSEQQERAFTLGLAGLLGE 208
           L +K            KDA + L C         K +   +Q+  A TL L  L  E
Sbjct: 776 LENKMKNAEAERERELKDAQKKLDCAKTKADASSKKMKEKQQEVEAITLELEELKRE 832


>gi|40255119 RAS and EF-hand domain containing [Homo sapiens]
          Length = 740

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 19/121 (15%)

Query: 56  LIKLYENFISEF--EHRVNPLSLVEIILHVVRQMTDPNVALTFLE------------KTR 101
           LI+ YE+ I  F  E R+    +  + + V R      + L+ LE            KTR
Sbjct: 162 LIQPYEHVIKNFIREIRLQSTEMENLAIAVKRAQDKAAMQLSELEEEMDQRIQAAEHKTR 221

Query: 102 EKVKSSDEAVILCKTAIGALKLNIGDLQVTKETIEDVEEM---LNNLPGVTSVHSRFYDL 158
           +  K   E  +         +  +GDLQVT + +  +EE    ++    V ++  + YDL
Sbjct: 222 KDEKRKAEEAL--SDLRRQYETEVGDLQVTIKKLRKLEEQSKRVSQKEDVAALKKQIYDL 279

Query: 159 S 159
           S
Sbjct: 280 S 280


>gi|6679189 transmembrane emp24 domain containing 3 [Homo sapiens]
          Length = 217

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 268 LLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVN 305
           LLR+ +  C  E+TF  P N +Q   EE+ +  K +++
Sbjct: 17  LLRRAEQPCGAELTFELPDNAKQCFHEEVEQGVKFSLD 54


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,947,611
Number of Sequences: 37866
Number of extensions: 516270
Number of successful extensions: 1343
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1331
Number of HSP's gapped (non-prelim): 21
length of query: 376
length of database: 18,247,518
effective HSP length: 104
effective length of query: 272
effective length of database: 14,309,454
effective search space: 3892171488
effective search space used: 3892171488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.