Guide to the Human Genome
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Name: OR52J3 Sequence: fasta or formatted (311aa) NCBI GI: 157041222
Description:

olfactory receptor, family 52, subfamily J, member 3

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         22           1
 C cysteine            2.9          9           1
 D aspartate           1.6          5           1
 E glutamate           2.6          8           1
 F phenylalanine       7.4         23           2
 G glycine             5.8         18           1
 H histidine           4.5         14           1
 I isoleucine         11.3         35           2
 K lysine              2.3          7           2
 L leucine            12.5         39           2
 M methionine          3.2         10           1
 N asparagine          2.6          8           1
 P proline             4.8         15           2
 Q glutamine           2.3          7           1
 R arginine            3.9         12           1
 S serine              5.5         17           1
 T threonine           4.5         14           2
 V valine              9.3         29           2
 W tryptophan          0.6          2           1
 Y tyrosine            5.5         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory receptor, family 52, subfamily J, member ... 
OR52E8                0.613   olfactory receptor, family 52, subfamily E, member 8...
OR52E4                0.606   olfactory receptor, family 52, subfamily E, member 4...
OR52E2                0.586   olfactory receptor, family 52, subfamily E, member 2...
OR52E6                0.579   olfactory receptor, family 52, subfamily E, member 6...
OR52D1                0.555   olfactory receptor, family 52, subfamily D, member 1...
OR52B2                0.541   olfactory receptor, family 52, subfamily B, member 2...
OR52R1                0.522   olfactory receptor, family 52, subfamily R, member ...
OR52H1                0.517   olfactory receptor, family 52, subfamily H, member 1...
OR52K2                0.515   olfactory receptor, family 52, subfamily K, member 2...
OR52N2                0.507   olfactory receptor, family 52, subfamily N, member 2...
OR52K1                0.507   olfactory receptor, family 52, subfamily K, member 1...
OR52N4                0.505   olfactory receptor, family 52, subfamily N, member ...
OR52L1                0.500   olfactory receptor, family 52, subfamily L, member ...
OR52N5                0.493   olfactory receptor, family 52, subfamily N, member 5...
OR52N1                0.490   olfactory receptor, family 52, subfamily N, member 1...
OR52A5                0.485   olfactory receptor, family 52, subfamily A, member 5...
OR52M1                0.483   olfactory receptor, family 52, subfamily M, member 1...
OR51I2                0.470   olfactory receptor, family 51, subfamily I, member 2...
OR51G1                0.469   olfactory receptor, family 51, subfamily G, member 1...
OR51F2                0.467   olfactory receptor, family 51, subfamily F, member 2...
OR51E1                0.462   olfactory receptor, family 51, subfamily E, member ...
OR52A1                0.460   olfactory receptor, family 52, subfamily A, member ...
OR52B6                0.457   olfactory receptor, family 52, subfamily B, member ...
OR51G2                0.454   olfactory receptor, family 51, subfamily G, member 2...
OR52B4                0.449   olfactory receptor, family 52, subfamily B, member 4...
OR51E2                0.444   olfactory receptor, family 51, subfamily E, member 2...
OR51L1                0.439   olfactory receptor, family 51, subfamily L, member 1...
OR52I2                0.437   olfactory receptor, family 52, subfamily I, member 2...
OR51A4                0.427   olfactory receptor, family 51, subfamily A, member 4...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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