Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: OR52A1 Sequence: fasta or formatted (312aa) NCBI GI: 116642873
Description:

olfactory receptor, family 52, subfamily A, member 1

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         23           3
 C cysteine            3.2         10           1
 D aspartate           1.3          4           1
 E glutamate           2.2          7           1
 F phenylalanine       8.7         27           2
 G glycine             4.5         14           1
 H histidine           3.8         12           1
 I isoleucine         12.5         39           2
 K lysine              2.9          9           1
 L leucine            11.9         37           3
 M methionine          3.5         11           1
 N asparagine          2.6          8           1
 P proline             4.2         13           2
 Q glutamine           3.5         11           1
 R arginine            2.9          9           1
 S serine              6.7         21           2
 T threonine           5.1         16           2
 V valine              7.7         24           2
 W tryptophan          1.0          3           1
 Y tyrosine            4.5         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory receptor, family 52, subfamily A, member ... 
OR52A5                0.752   olfactory receptor, family 52, subfamily A, member 5...
OR52A4                0.583   olfactory receptor, family 52, subfamily A, member 4...
OR52R1                0.500   olfactory receptor, family 52, subfamily R, member ...
OR52N4                0.498   olfactory receptor, family 52, subfamily N, member ...
OR52E2                0.482   olfactory receptor, family 52, subfamily E, member 2...
OR52E4                0.478   olfactory receptor, family 52, subfamily E, member 4...
OR52E8                0.478   olfactory receptor, family 52, subfamily E, member 8...
OR51E2                0.470   olfactory receptor, family 51, subfamily E, member 2...
OR52K2                0.470   olfactory receptor, family 52, subfamily K, member 2...
OR52N1                0.467   olfactory receptor, family 52, subfamily N, member 1...
OR52N2                0.465   olfactory receptor, family 52, subfamily N, member 2...
OR52J3                0.462   olfactory receptor, family 52, subfamily J, member ...
OR52D1                0.460   olfactory receptor, family 52, subfamily D, member 1...
OR52K1                0.458   olfactory receptor, family 52, subfamily K, member 1...
OR52M1                0.455   olfactory receptor, family 52, subfamily M, member 1...
OR52L1                0.450   olfactory receptor, family 52, subfamily L, member ...
OR52B2                0.449   olfactory receptor, family 52, subfamily B, member 2...
OR51E1                0.447   olfactory receptor, family 51, subfamily E, member ...
OR52N5                0.445   olfactory receptor, family 52, subfamily N, member 5...
OR52E6                0.444   olfactory receptor, family 52, subfamily E, member 6...
OR52H1                0.444   olfactory receptor, family 52, subfamily H, member 1...
OR51G1                0.434   olfactory receptor, family 51, subfamily G, member 1...
OR51F2                0.432   olfactory receptor, family 51, subfamily F, member 2...
OR51I2                0.424   olfactory receptor, family 51, subfamily I, member 2...
OR51G2                0.410   olfactory receptor, family 51, subfamily G, member 2...
OR51L1                0.409   olfactory receptor, family 51, subfamily L, member 1...
OR52B6                0.407   olfactory receptor, family 52, subfamily B, member ...
OR51I1                0.402   olfactory receptor, family 51, subfamily I, member 1...
OR52W1                0.399   olfactory receptor, family 52, subfamily W, member 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press