Search of human proteins with 11056010

Search of human proteins with 11056010

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11056010 prostate and breast cancer overexpressed 1 [Homo
sapiens]
         (135 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|11056010 prostate and breast cancer overexpressed 1 [Homo sap...   271   9e-74
gi|91208435 elongation protein 4 homolog [Homo sapiens]                30   0.78 
gi|215599570 hypothetical protein LOC51250 isoform b [Homo sapiens]    29   1.0  
gi|215599508 hypothetical protein LOC51250 isoform a [Homo sapiens]    29   1.0  
gi|7706029 hypothetical protein LOC51250 isoform a [Homo sapiens]      29   1.0  
gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens]             29   1.3  
gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens]             29   1.3  
gi|150378539 piccolo isoform 1 [Homo sapiens]                          28   1.7  
gi|144953876 signal-regulatory protein beta 1 isoform 1 precurso...    27   5.0  
gi|94538335 signal-regulatory protein gamma isoform 1 precursor ...    27   5.0  
gi|13129108 melanophilin isoform 1 [Homo sapiens]                      27   5.0  
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa...    27   6.6  
gi|194239688 chemokine (C-C motif) ligand 20 isoform 2 [Homo sap...    26   8.6  
gi|108389176 tRNA splicing endonuclease 54 homolog [Homo sapiens]      26   8.6  
gi|155030242 WD repeat domain 60 [Homo sapiens]                        26   8.6  
gi|45827701 pad-1-like [Homo sapiens]                                  26   8.6  

>gi|11056010 prostate and breast cancer overexpressed 1 [Homo
           sapiens]
          Length = 135

 Score =  271 bits (694), Expect = 9e-74
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MRAFLRNQKYEDMHNIIHILQIRKLRHRLSNFPRLPGILAPETVLLPFCYKVFRKKEKVK 60
           MRAFLRNQKYEDMHNIIHILQIRKLRHRLSNFPRLPGILAPETVLLPFCYKVFRKKEKVK
Sbjct: 1   MRAFLRNQKYEDMHNIIHILQIRKLRHRLSNFPRLPGILAPETVLLPFCYKVFRKKEKVK 60

Query: 61  RSQKATEFIDYSIEQSHHAILTPLQTHLTMKGSSMKCSSLSSEAILFTLTLQLTQTLGLE 120
           RSQKATEFIDYSIEQSHHAILTPLQTHLTMKGSSMKCSSLSSEAILFTLTLQLTQTLGLE
Sbjct: 61  RSQKATEFIDYSIEQSHHAILTPLQTHLTMKGSSMKCSSLSSEAILFTLTLQLTQTLGLE 120

Query: 121 CCLLYLSKTIHPQII 135
           CCLLYLSKTIHPQII
Sbjct: 121 CCLLYLSKTIHPQII 135


>gi|91208435 elongation protein 4 homolog [Homo sapiens]
          Length = 424

 Score = 29.6 bits (65), Expect = 0.78
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 10/55 (18%)

Query: 7   NQKYEDMHNIIHILQIRKLRHRLSNFPRLPGILAPETVLLPFCYKVFRKKEKVKR 61
           N  Y+D H +IHI QI          PRL  ++  E+ +    +K+ RK   ++R
Sbjct: 338 NPLYKDYHGLIHIRQI----------PRLNNLICDESDVKDLAFKLKRKLFTIER 382


>gi|215599570 hypothetical protein LOC51250 isoform b [Homo sapiens]
          Length = 245

 Score = 29.3 bits (64), Expect = 1.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 34  RLPGILAPETVLLPFCYKVFRKKEKVKRSQKATEFIDY--SIEQSHH 78
           RLPG+L     + PF  ++       K ++K+ + +D   S E+SHH
Sbjct: 71  RLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHH 117


>gi|215599508 hypothetical protein LOC51250 isoform a [Homo sapiens]
          Length = 240

 Score = 29.3 bits (64), Expect = 1.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 34  RLPGILAPETVLLPFCYKVFRKKEKVKRSQKATEFIDY--SIEQSHH 78
           RLPG+L     + PF  ++       K ++K+ + +D   S E+SHH
Sbjct: 66  RLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHH 112


>gi|7706029 hypothetical protein LOC51250 isoform a [Homo sapiens]
          Length = 240

 Score = 29.3 bits (64), Expect = 1.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 34  RLPGILAPETVLLPFCYKVFRKKEKVKRSQKATEFIDY--SIEQSHH 78
           RLPG+L     + PF  ++       K ++K+ + +D   S E+SHH
Sbjct: 66  RLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHH 112


>gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens]
          Length = 1807

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 57   EKVKRSQKATEFIDYSIEQSHHAILTPLQTHLTMK--GSSMKCSSLSSEAILFTLTLQLT 114
            ++ K S  A  F   SI  S H + + +QT LT    GS+ + S   ++  L  L L+LT
Sbjct: 964  KEFKESSAAEAFRCRSISVSEHVVRSRIQTSLTSASLGSADENSVAQADDSLKNLHLELT 1023

Query: 115  QT 116
            +T
Sbjct: 1024 ET 1025


>gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens]
          Length = 1784

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 57   EKVKRSQKATEFIDYSIEQSHHAILTPLQTHLTMK--GSSMKCSSLSSEAILFTLTLQLT 114
            ++ K S  A  F   SI  S H + + +QT LT    GS+ + S   ++  L  L L+LT
Sbjct: 964  KEFKESSAAEAFRCRSISVSEHVVRSRIQTSLTSASLGSADENSVAQADDSLKNLHLELT 1023

Query: 115  QT 116
            +T
Sbjct: 1024 ET 1025


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 28.5 bits (62), Expect = 1.7
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 3    AFLRNQKYEDMHNIIHILQIRKLRHRLSNFPRLPGILAPETVL-LPFCYKVFRKKEKVKR 61
            A  +  K +    I+ ILQ R + ++  +   LP +     V+ +    KV +KK +V R
Sbjct: 5014 ALKKEMKTDGEQLIVEILQCRNITYKFKSPDHLPDLYVKIYVMNISTQKKVIKKKTRVCR 5073

Query: 62   SQKATEFID---YSIEQSHHAILTPLQTHLTMKGSSMKCSSLSSEAILF 107
              +   F +   +S+  + H+    LQ  L   G      +L  EA ++
Sbjct: 5074 HDREPSFNETFRFSLSPAGHS----LQILLFSNGGKFMKKTLIGEACIW 5118


>gi|144953876 signal-regulatory protein beta 1 isoform 1 precursor
           [Homo sapiens]
          Length = 398

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 9/60 (15%)

Query: 65  ATEFIDYSIEQSHHAILTPLQTH---------LTMKGSSMKCSSLSSEAILFTLTLQLTQ 115
           A + + YSI  +   +LT    H         +T++G  ++ ++  SEAI    TL++TQ
Sbjct: 200 AGDSVSYSIHSTARVVLTRGDVHSQVICEIAHITLQGDPLRGTANLSEAIRVPPTLEVTQ 259


>gi|94538335 signal-regulatory protein gamma isoform 1 precursor
           [Homo sapiens]
          Length = 387

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 9/56 (16%)

Query: 69  IDYSIEQSHHAILTPLQT---------HLTMKGSSMKCSSLSSEAILFTLTLQLTQ 115
           + YSI  +   +L P            H+T++G  ++ ++  SEAI    TL++TQ
Sbjct: 203 VAYSIRSTARVVLDPWDVRSQVICEVAHVTLQGDPLRGTANLSEAIRVPPTLEVTQ 258


>gi|13129108 melanophilin isoform 1 [Homo sapiens]
          Length = 600

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 69  IDYSIEQSHHAILTPLQTHLTMKGSSMKCSSLSSEAILFTLTLQLTQTLGLECCLLYLSK 128
           +D S E+S       ++ H+     S +    SSE+ +F L   ++    +EC L YL  
Sbjct: 311 VDTSDEES-------IRAHVMASHHSKRRGRASSESQIFELNKHIS---AVECLLTYLEN 360

Query: 129 TIHPQI 134
           T+ P +
Sbjct: 361 TVVPPL 366


>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
            sapiens]
          Length = 2113

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 36   PGILAPETVLLPFCYKVFRKKEKVKRSQKATEFIDYSIEQSHHAILTPLQ 85
            P ILA   V L F  +  RK++++KR + A    +  I +++ +  TP++
Sbjct: 1658 PVILATLGVALLFIVRKKRKEKRLKRLRDAKSLAEMLISKNNRSFDTPVK 1707


>gi|194239688 chemokine (C-C motif) ligand 20 isoform 2 [Homo
           sapiens]
          Length = 95

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 99  SLSSEAILFTLTLQL---TQTLGLECCLLYLSKTIHPQII 135
           SL   A++  L L L   ++    +CCL Y  + +HP+ I
Sbjct: 6   SLLLAALMSVLLLHLCGESEASNFDCCLGYTDRILHPKFI 45


>gi|108389176 tRNA splicing endonuclease 54 homolog [Homo sapiens]
          Length = 526

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 15/78 (19%)

Query: 26  RHRLSNFPR---LPGILAP-ETVLLPFCYKVFRKKEKVKRSQKATEFIDYSIEQSHHAIL 81
           RH L   P    LP  +A  ET    +C K+ ++KEK+ R            E+ HHA  
Sbjct: 311 RHTLLRAPAPELLPANVAGRETDAESWCQKLNQRKEKLSRR-----------EREHHAEA 359

Query: 82  TPLQTHLTMKGSSMKCSS 99
              Q  +       +CSS
Sbjct: 360 AQFQEDVNADPEVQRCSS 377


>gi|155030242 WD repeat domain 60 [Homo sapiens]
          Length = 1066

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 64  KATEFIDYSIEQSHHAILTPLQTHLTMKGSSMKCSSLSSEAIL 106
           +A E I  S+ +    +L+P  T   M G S   +SL    +L
Sbjct: 766 QAVEPISTSVHKKQSFVLSPFSTQEEMSGLSFHIASLDESGVL 808


>gi|45827701 pad-1-like [Homo sapiens]
          Length = 2298

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 67  EFIDYSIEQSHHAILTPLQTHLTM 90
           +FID  +E+ HHA L P +  +++
Sbjct: 347 KFIDADVEERHHAYLKPFRVLISL 370


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,630,168
Number of Sequences: 37866
Number of extensions: 164368
Number of successful extensions: 571
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 17
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.