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Search of human proteins with 156151415
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156151415 phosphatidylcholine transfer protein isoform 1
[Homo sapiens]
(214 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156151415 phosphatidylcholine transfer protein isoform 1 [Hom... 444 e-125
gi|156151417 phosphatidylcholine transfer protein isoform 2 [Hom... 300 6e-82
gi|151301035 START domain containing 7 [Homo sapiens] 109 2e-24
gi|116812600 START domain containing 10 [Homo sapiens] 72 3e-13
gi|14165452 alpha 3 type IV collagen binding protein isoform 2 [... 43 2e-04
gi|194294543 alpha 3 type IV collagen binding protein isoform 3 ... 43 2e-04
gi|5031717 alpha 3 type IV collagen binding protein isoform 1 [H... 43 2e-04
gi|38505213 YTH domain containing 2 [Homo sapiens] 30 1.5
gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens] 30 2.0
gi|114155133 dynein, axonemal, heavy chain 9 isoform 2 [Homo sap... 30 2.0
gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens] 29 2.6
gi|21040247 StAR-related lipid transfer (START) domain containin... 29 2.6
gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens] 29 3.4
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 28 5.8
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 28 5.8
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 28 5.8
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 28 5.8
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 28 5.8
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 28 5.8
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 28 5.8
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 28 5.8
gi|169212973 PREDICTED: hypothetical protein [Homo sapiens] 28 7.6
gi|113427916 PREDICTED: hypothetical protein [Homo sapiens] 27 10.0
>gi|156151415 phosphatidylcholine transfer protein isoform 1 [Homo
sapiens]
Length = 214
Score = 444 bits (1142), Expect = e-125
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MELAAGSFSEEQFWEACAELQQPALAGADWQLLVETSGISIYRLLDKKTGLYEYKVFGVL 60
MELAAGSFSEEQFWEACAELQQPALAGADWQLLVETSGISIYRLLDKKTGLYEYKVFGVL
Sbjct: 1 MELAAGSFSEEQFWEACAELQQPALAGADWQLLVETSGISIYRLLDKKTGLYEYKVFGVL 60
Query: 61 EDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQR 120
EDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQR
Sbjct: 61 EDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQR 120
Query: 121 RDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG 180
RDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG
Sbjct: 121 RDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG 180
Query: 181 GQIPSWLINWAAKNGVPNFLKDMARACQNYLKKT 214
GQIPSWLINWAAKNGVPNFLKDMARACQNYLKKT
Sbjct: 181 GQIPSWLINWAAKNGVPNFLKDMARACQNYLKKT 214
>gi|156151417 phosphatidylcholine transfer protein isoform 2 [Homo
sapiens]
Length = 142
Score = 300 bits (768), Expect = 6e-82
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 73 MDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHV 132
MDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHV
Sbjct: 1 MDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHV 60
Query: 133 ILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAA 192
ILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAA
Sbjct: 61 ILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAA 120
Query: 193 KNGVPNFLKDMARACQNYLKKT 214
KNGVPNFLKDMARACQNYLKKT
Sbjct: 121 KNGVPNFLKDMARACQNYLKKT 142
>gi|151301035 START domain containing 7 [Homo sapiens]
Length = 370
Score = 109 bits (272), Expect = 2e-24
Identities = 56/183 (30%), Positives = 102/183 (55%), Gaps = 8/183 (4%)
Query: 30 WQLLVETSGISIYRLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELY 89
W+++++ ++R T LY+Y+VFG D +P ++ +D++YRK+WD V +L
Sbjct: 141 WEMVMDKKHFKLWRRPITGTHLYQYRVFGTYTDVTPRQFFNVQLDTEYRKKWDALVIKLE 200
Query: 90 EQE---CNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGER 146
E +G V++W +P+PM +RDYVY+R R +D E + V+++R+ P + E
Sbjct: 201 VIERDVVSGSEVLHWVTHFPYPMYSRDYVYVR-RYSVDQENNMM-VLVSRAVEHPSVPES 258
Query: 147 SGVIRVKQYKQSLAI---ESDGKKGSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDM 203
+RV+ Y+ + I +S + G + Y DNP P + ++W +G+P+FL+ +
Sbjct: 259 PEFVRVRSYESQMVIRPHKSFDENGFDYLLTYSDNPQTVFPRYCVSWMVSSGMPDFLEKL 318
Query: 204 ARA 206
A
Sbjct: 319 HMA 321
>gi|116812600 START domain containing 10 [Homo sapiens]
Length = 291
Score = 72.4 bits (176), Expect = 3e-13
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 7/188 (3%)
Query: 26 AGADWQLLVETSGISIY-RLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQY 84
A W L +G+S++ + ++ L++ K D L D+ D +YRK+WD
Sbjct: 39 AEVGWNLTYSRAGVSVWVQAVEMDRTLHKIKCRMECCDVPAETLYDVLHDIEYRKKWDSN 98
Query: 85 VKELYE--QECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQ 142
V E ++ + V Y+ + P P+ NRD + LR + + ++I+ S P+
Sbjct: 99 VIETFDIARLTVNADVGYYSWRCPKPLKNRDVITLRSWLPMGAD----YIIMNYSVKHPK 154
Query: 143 LGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKD 202
R ++R + I+S G K + +P G +P W++N +++ P +K
Sbjct: 155 YPPRKDLVRAVSIQTGYLIQSTGPKSCVITYLAQVDPKGSLPKWVVNKSSQFLAPKAMKK 214
Query: 203 MARACQNY 210
M +AC Y
Sbjct: 215 MYKACLKY 222
>gi|14165452 alpha 3 type IV collagen binding protein isoform 2
[Homo sapiens]
Length = 598
Score = 42.7 bits (99), Expect = 2e-04
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 20/193 (10%)
Query: 28 ADWQLLVETSGISIYRLLDKKTG--LYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV 85
A+WQL+VE + +YR ++ G L K ++ + + + + + D R W+ +
Sbjct: 390 ANWQLVVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTI 449
Query: 86 KELY--EQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDL------DMEGRKIHVILARS 137
+ + E + ++Y K +P S RD +YL R + D E +
Sbjct: 450 ENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDH 509
Query: 138 TSMPQLGER--SGVIRVKQYKQSLAIESDGKKG-------SKVFMYYFDNPGGQIPSWLI 188
S P L R I V Q+L +G + K+ NPGG P+ ++
Sbjct: 510 DSAP-LNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVL 568
Query: 189 NWAAKNGVPNFLK 201
AK P FLK
Sbjct: 569 RAVAKREYPKFLK 581
>gi|194294543 alpha 3 type IV collagen binding protein isoform 3
[Homo sapiens]
Length = 752
Score = 42.7 bits (99), Expect = 2e-04
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 20/193 (10%)
Query: 28 ADWQLLVETSGISIYRLLDKKTG--LYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV 85
A+WQL+VE + +YR ++ G L K ++ + + + + + D R W+ +
Sbjct: 544 ANWQLVVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTI 603
Query: 86 KELY--EQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDL------DMEGRKIHVILARS 137
+ + E + ++Y K +P S RD +YL R + D E +
Sbjct: 604 ENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDH 663
Query: 138 TSMPQLGER--SGVIRVKQYKQSLAIESDGKKG-------SKVFMYYFDNPGGQIPSWLI 188
S P L R I V Q+L +G + K+ NPGG P+ ++
Sbjct: 664 DSAP-LNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVL 722
Query: 189 NWAAKNGVPNFLK 201
AK P FLK
Sbjct: 723 RAVAKREYPKFLK 735
>gi|5031717 alpha 3 type IV collagen binding protein isoform 1 [Homo
sapiens]
Length = 624
Score = 42.7 bits (99), Expect = 2e-04
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 20/193 (10%)
Query: 28 ADWQLLVETSGISIYRLLDKKTG--LYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV 85
A+WQL+VE + +YR ++ G L K ++ + + + + + D R W+ +
Sbjct: 416 ANWQLVVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTI 475
Query: 86 KELY--EQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDL------DMEGRKIHVILARS 137
+ + E + ++Y K +P S RD +YL R + D E +
Sbjct: 476 ENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDH 535
Query: 138 TSMPQLGER--SGVIRVKQYKQSLAIESDGKKG-------SKVFMYYFDNPGGQIPSWLI 188
S P L R I V Q+L +G + K+ NPGG P+ ++
Sbjct: 536 DSAP-LNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVL 594
Query: 189 NWAAKNGVPNFLK 201
AK P FLK
Sbjct: 595 RAVAKREYPKFLK 607
>gi|38505213 YTH domain containing 2 [Homo sapiens]
Length = 1430
Score = 30.0 bits (66), Expect = 1.5
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 107 FPMSNRDYVYLRQRRD------LDMEGRKIHVILAR-STSMPQLGERSGVIRVKQYKQSL 159
FP++N++ L + + ++ E R++ R + +PQ+ + G ++QSL
Sbjct: 134 FPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKRGESEFDSFRQSL 193
Query: 160 AIESDGK------KGSKVFMYYFDNPGG---QIPSWLINWAAKNGVP 197
+ + K +KV + + G QIP +L++ KNG+P
Sbjct: 194 PVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIP 240
>gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens]
Length = 1462
Score = 29.6 bits (65), Expect = 2.0
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 64 SPTLLADIYMDSDYRKQWDQYVKEL-YEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRD 122
SP+LL + Y+K+ + + L + E ++ +V S+ + Y R
Sbjct: 633 SPSLLIESDSPDKYKKKKSSFKRFLALTFKKKTENKLHVDVNVSSSRSSSESSYHGPSRI 692
Query: 123 LDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKK 167
L+++ R + ++ PQL R+G +R + SL DGK+
Sbjct: 693 LEVDRRSL-------SNSPQLKSRTGKLRASESPSSLIFYRDGKR 730
>gi|114155133 dynein, axonemal, heavy chain 9 isoform 2 [Homo sapiens]
Length = 4486
Score = 29.6 bits (65), Expect = 2.0
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 16 ACAELQQPALAGADWQLLVETSGIS--------IYRLLDKKTGLYEYKVFGVLE 61
A AELQ PA+ W+ L++ +G+S + LL + YE +V G+++
Sbjct: 1372 AVAELQNPAIRERHWRQLMQATGVSFTMDQDTTLAHLLQLQLHHYEDEVRGIVD 1425
>gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens]
Length = 1321
Score = 29.3 bits (64), Expect = 2.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1 MELAAGSFSEEQFWEACAELQQPALAG 27
+E+ AGS E FWE A ++PAL G
Sbjct: 971 LEVLAGSPGVESFWEEVASGEEPALPG 997
>gi|21040247 StAR-related lipid transfer (START) domain containing
4 [Homo sapiens]
Length = 205
Score = 29.3 bits (64), Expect = 2.6
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 20 LQQPALAGADWQLLVETSGISIYRLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRK 79
+Q ++ W++ +T ++++R ++ Y YK GV++D +++ D R
Sbjct: 19 IQYHSIEEDKWRVAKKTKDVTVWRKPSEEFNGYLYKAQGVIDDLVYSII-DHIRPGPCRL 77
Query: 80 QWDQYVKEL-----YEQEC 93
WD + L +E+ C
Sbjct: 78 DWDSLMTSLDILENFEENC 96
>gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens]
Length = 400
Score = 28.9 bits (63), Expect = 3.4
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 19 ELQQPALAGADWQLLVET---SGISIYRLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDS 75
E +P + A+ L+ E I+IY L + KVFG +DC L I
Sbjct: 111 ESSRPLHSKAEQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTI---- 166
Query: 76 DYRKQWDQYVKELYEQECNGETVVYWEVKYP 106
Y++Q Q + L EC+G Y + P
Sbjct: 167 -YKRQKKQDLTLLPRLECSGTNTTYCSLDLP 196
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 28.1 bits (61), Expect = 5.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 71 IYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDL 123
+Y DS+ R +++ + G+TV WE+ N +Y QRRDL
Sbjct: 2895 VYTDSEARDVFEKATVSAPFGKFQGKTVTIWEI------INSEYFTAEQRRDL 2941
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 28.1 bits (61), Expect = 5.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 71 IYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDL 123
+Y DS+ R +++ + G+TV WE+ N +Y QRRDL
Sbjct: 2899 VYTDSEARDVFEKATVSAPFGKFQGKTVTIWEI------INSEYFTAEQRRDL 2945
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 28.1 bits (61), Expect = 5.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 71 IYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDL 123
+Y DS+ R +++ + G+TV WE+ N +Y QRRDL
Sbjct: 2895 VYTDSEARDVFEKATVSAPFGKFQGKTVTIWEI------INSEYFTAEQRRDL 2941
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 28.1 bits (61), Expect = 5.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 71 IYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDL 123
+Y DS+ R +++ + G+TV WE+ N +Y QRRDL
Sbjct: 2863 VYTDSEARDVFEKATVSAPFGKFQGKTVTIWEI------INSEYFTAEQRRDL 2909
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 28.1 bits (61), Expect = 5.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 71 IYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDL 123
+Y DS+ R +++ + G+TV WE+ N +Y QRRDL
Sbjct: 3032 VYTDSEARDVFEKATVSAPFGKFQGKTVTIWEI------INSEYFTAEQRRDL 3078
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 28.1 bits (61), Expect = 5.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 71 IYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDL 123
+Y DS+ R +++ + G+TV WE+ N +Y QRRDL
Sbjct: 2873 VYTDSEARDVFEKATVSAPFGKFQGKTVTIWEI------INSEYFTAEQRRDL 2919
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 28.1 bits (61), Expect = 5.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 71 IYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDL 123
+Y DS+ R +++ + G+TV WE+ N +Y QRRDL
Sbjct: 2881 VYTDSEARDVFEKATVSAPFGKFQGKTVTIWEI------INSEYFTAEQRRDL 2927
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 28.1 bits (61), Expect = 5.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 71 IYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDL 123
+Y DS+ R +++ + G+TV WE+ N +Y QRRDL
Sbjct: 2922 VYTDSEARDVFEKATVSAPFGKFQGKTVTIWEI------INSEYFTAEQRRDL 2968
>gi|169212973 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 27.7 bits (60), Expect = 7.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 25 LAGADWQLLVETSGISIYRLLDKKTGLYEYKVFGVLEDCS 64
L+ A + V T I+R+L ++ GLY+ +G L CS
Sbjct: 64 LSSAQHLIAVVTEDTLIFRILPQRLGLYKLLSWGSLSFCS 103
>gi|113427916 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 27.3 bits (59), Expect = 10.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 25 LAGADWQLLVETSGISIYRLLDKKTGLYEYKVFGVLEDCS 64
L+ A + V T I+R+L ++ GLY+ +G L CS
Sbjct: 64 LSSAQHLIAVVTEDTLIFRILPQRLGLYKLLSWGGLSFCS 103
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,470,239
Number of Sequences: 37866
Number of extensions: 363352
Number of successful extensions: 660
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 27
length of query: 214
length of database: 18,247,518
effective HSP length: 98
effective length of query: 116
effective length of database: 14,536,650
effective search space: 1686251400
effective search space used: 1686251400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.