Guide to the Human Genome
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Name: PCTP Sequence: fasta or formatted (142aa) NCBI GI: 156151417
Description:

phosphatidylcholine transfer protein isoform 2

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt prot [214aa] phosphatidylcholine transfer protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          6           2
 C cysteine            1.4          2           1
 D aspartate           6.3          9           1
 E glutamate           5.6          8           1
 F phenylalanine       2.8          4           1
 G glycine             6.3          9           2
 H histidine           0.7          1           1
 I isoleucine          4.2          6           1
 K lysine              9.2         13           2
 L leucine             6.3          9           1
 M methionine          4.2          6           1
 N asparagine          4.9          7           1
 P proline             4.2          6           1
 Q glutamine           6.3          9           1
 R arginine            7.0         10           2
 S serine              6.3          9           1
 T threonine           2.1          3           1
 V valine              7.0         10           2
 W tryptophan          2.8          4           1
 Y tyrosine            7.7         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphatidylcholine transfer protein isoform 2 [Hom... 
PCTP                  1.000   phosphatidylcholine transfer protein isoform 1 [Hom...
STARD7                0.218   START domain containing 7 
STARD10               0.138   START domain containing 10 
YTHDC2                0.018   YTH domain containing 2 
PEBP1                 0.007   prostatic binding protein 
KDM5A                 0.007   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.007   retinoblastoma binding protein 2 isoform 2 
RTN4IP1               0.007   reticulon 4 interacting protein 1 precursor 
FGD5                  0.007   FYVE, RhoGEF and PH domain containing 5 
TAF1                  0.004   TBP-associated factor 1 isoform 2 
TAF1                  0.004   TBP-associated factor 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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