Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 154816186
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154816186 transmembrane protein 55B isoform 1 [Homo sapiens]
(284 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154816186 transmembrane protein 55B isoform 1 [Homo sapiens] 618 e-177
gi|154816184 transmembrane protein 55B isoform 2 [Homo sapiens] 595 e-170
gi|24308165 transmembrane protein 55A [Homo sapiens] 292 3e-79
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 45 7e-05
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 45 7e-05
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 45 7e-05
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 45 7e-05
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 45 7e-05
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 45 7e-05
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 45 7e-05
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 45 7e-05
gi|91208420 bassoon protein [Homo sapiens] 42 6e-04
gi|115430223 galectin 3 [Homo sapiens] 42 6e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 42 6e-04
gi|56676337 transmembrane protein 28 [Homo sapiens] 41 0.001
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 41 0.001
gi|163965366 nascent polypeptide-associated complex alpha subuni... 41 0.001
gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens] 40 0.002
gi|7706501 WW domain binding protein 11 [Homo sapiens] 40 0.002
gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens] 40 0.002
gi|6912752 zinc finger protein 281 [Homo sapiens] 40 0.002
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 39 0.005
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 39 0.005
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 39 0.005
gi|6912446 potassium voltage-gated channel, subfamily H, member ... 39 0.007
gi|59806357 submaxillary gland androgen regulated protein 3 homo... 39 0.007
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 38 0.009
gi|17511255 poly(A) binding protein interacting protein 1 isofor... 38 0.009
gi|13129048 oligonucleotide/oligosaccharide-binding fold contain... 38 0.009
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 38 0.012
>gi|154816186 transmembrane protein 55B isoform 1 [Homo sapiens]
Length = 284
Score = 618 bits (1593), Expect = e-177
Identities = 284/284 (100%), Positives = 284/284 (100%)
Query: 1 MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFP 60
MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFP
Sbjct: 1 MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFP 60
Query: 61 EGHPAVLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPI 120
EGHPAVLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPI
Sbjct: 61 EGHPAVLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPI 120
Query: 121 KNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVI 180
KNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVI
Sbjct: 121 KNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVI 180
Query: 181 CGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGT 240
CGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGT
Sbjct: 181 CGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGT 240
Query: 241 WKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS 284
WKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS
Sbjct: 241 WKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS 284
>gi|154816184 transmembrane protein 55B isoform 2 [Homo sapiens]
Length = 277
Score = 595 bits (1533), Expect = e-170
Identities = 277/284 (97%), Positives = 277/284 (97%), Gaps = 7/284 (2%)
Query: 1 MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFP 60
MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGA AFPPFP
Sbjct: 1 MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGA-------AFPPFP 53
Query: 61 EGHPAVLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPI 120
EGHPAVLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPI
Sbjct: 54 EGHPAVLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPI 113
Query: 121 KNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVI 180
KNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVI
Sbjct: 114 KNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVI 173
Query: 181 CGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGT 240
CGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGT
Sbjct: 174 CGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGT 233
Query: 241 WKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS 284
WKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS
Sbjct: 234 WKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS 277
>gi|24308165 transmembrane protein 55A [Homo sapiens]
Length = 257
Score = 292 bits (747), Expect = 3e-79
Identities = 148/292 (50%), Positives = 181/292 (61%), Gaps = 43/292 (14%)
Query: 1 MAADG--ERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPP 58
MAADG ERSPLLS A G +TP+APPY + + P+A
Sbjct: 1 MAADGVDERSPLLS-------------------ASHSGNVTPTAPPYL--QESSPRA--- 36
Query: 59 FPEGHPAVLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEAT 118
E PPPY+ + SPD+ P+I CRVCQSLIN++GK+HQHVVKC VCNEAT
Sbjct: 37 -----------ELPPPYTAIASPDASGIPVINCRVCQSLINLDGKLHQHVVKCTVCNEAT 85
Query: 119 PIKNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPV------HPGPLSPEP 172
PIKN P GKKYVRCPCNCLLICK TS+RI CPRP C+RIINLGPV P +
Sbjct: 86 PIKNPPTGKKYVRCPCNCLLICKDTSRRIGCPRPNCRRIINLGPVMLISEEQPAQPALPI 145
Query: 173 QPMGVRVICGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVT 232
QP G RV+CGHC NTFLW E TLA+CPHC+K+SS+G PR+RC +G++
Sbjct: 146 QPEGTRVVCGHCGNTFLWMELRFNTLAKCPHCKKISSVGSALPRRRCCAYITIGMICIFI 205
Query: 233 ATGLAFGTWKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS 284
GL GT ARR+ Y +WA LL ++CL RA YW ++VS+P +F+
Sbjct: 206 GVGLTVGTPDFARRFRATYVSWAIAYLLGLICLIRACYWGAIRVSYPEHSFA 257
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 45.1 bits (105), Expect = 7e-05
Identities = 37/112 (33%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG-GGLTPSAPPY----------GAGKHAPP 53
G P S P G GG + PG SG PG G P PP A P
Sbjct: 243 GPAPPNYSRP--HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 54 QAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGS-------APMITCRVCQSLI 98
+ PP P G P+ P PP SP+ P + S APM+ QS I
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRI 352
Score = 38.5 bits (88), Expect = 0.007
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 26 GPG-GSGAGPGGGLTPSAP----PYGAGKHAPPQAFPPFPEGHPAVLPGEDP--PP 74
GPG G G GPG G P+ P P+G G P PP P G P +PG+ P PP
Sbjct: 229 GPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSGVPPGMPGQPPGGPP 281
Score = 29.3 bits (64), Expect = 4.1
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 16 DGGAGGNGLVGPG-GSGAGPGGGLTPSAPPYGAGKHA-------PPQAFPPFPEGHPAVL 67
D GG GP G G PG L PS P H+ PP A P P P
Sbjct: 5 DPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 68 PGED 71
P ++
Sbjct: 65 PQDN 68
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 45.1 bits (105), Expect = 7e-05
Identities = 37/112 (33%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG-GGLTPSAPPY----------GAGKHAPP 53
G P S P G GG + PG SG PG G P PP A P
Sbjct: 243 GPAPPNYSRP--HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 54 QAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGS-------APMITCRVCQSLI 98
+ PP P G P+ P PP SP+ P + S APM+ QS I
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRI 352
Score = 38.5 bits (88), Expect = 0.007
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 26 GPG-GSGAGPGGGLTPSAP----PYGAGKHAPPQAFPPFPEGHPAVLPGEDP--PP 74
GPG G G GPG G P+ P P+G G P PP P G P +PG+ P PP
Sbjct: 229 GPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSGVPPGMPGQPPGGPP 281
Score = 29.3 bits (64), Expect = 4.1
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 16 DGGAGGNGLVGPG-GSGAGPGGGLTPSAPPYGAGKHA-------PPQAFPPFPEGHPAVL 67
D GG GP G G PG L PS P H+ PP A P P P
Sbjct: 5 DPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 68 PGED 71
P ++
Sbjct: 65 PQDN 68
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 45.1 bits (105), Expect = 7e-05
Identities = 37/112 (33%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG-GGLTPSAPPY----------GAGKHAPP 53
G P S P G GG + PG SG PG G P PP A P
Sbjct: 243 GPAPPNYSRP--HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 54 QAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGS-------APMITCRVCQSLI 98
+ PP P G P+ P PP SP+ P + S APM+ QS I
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRI 352
Score = 38.5 bits (88), Expect = 0.007
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 26 GPG-GSGAGPGGGLTPSAP----PYGAGKHAPPQAFPPFPEGHPAVLPGEDP--PP 74
GPG G G GPG G P+ P P+G G P PP P G P +PG+ P PP
Sbjct: 229 GPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSGVPPGMPGQPPGGPP 281
Score = 29.3 bits (64), Expect = 4.1
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 16 DGGAGGNGLVGPG-GSGAGPGGGLTPSAPPYGAGKHA-------PPQAFPPFPEGHPAVL 67
D GG GP G G PG L PS P H+ PP A P P P
Sbjct: 5 DPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 68 PGED 71
P ++
Sbjct: 65 PQDN 68
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 45.1 bits (105), Expect = 7e-05
Identities = 37/112 (33%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG-GGLTPSAPPY----------GAGKHAPP 53
G P S P G GG + PG SG PG G P PP A P
Sbjct: 243 GPAPPNYSRP--HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 54 QAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGS-------APMITCRVCQSLI 98
+ PP P G P+ P PP SP+ P + S APM+ QS I
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRI 352
Score = 38.5 bits (88), Expect = 0.007
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 26 GPG-GSGAGPGGGLTPSAP----PYGAGKHAPPQAFPPFPEGHPAVLPGEDP--PP 74
GPG G G GPG G P+ P P+G G P PP P G P +PG+ P PP
Sbjct: 229 GPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSGVPPGMPGQPPGGPP 281
Score = 29.3 bits (64), Expect = 4.1
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 16 DGGAGGNGLVGPG-GSGAGPGGGLTPSAPPYGAGKHA-------PPQAFPPFPEGHPAVL 67
D GG GP G G PG L PS P H+ PP A P P P
Sbjct: 5 DPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 68 PGED 71
P ++
Sbjct: 65 PQDN 68
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 45.1 bits (105), Expect = 7e-05
Identities = 37/112 (33%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG-GGLTPSAPPY----------GAGKHAPP 53
G P S P G GG + PG SG PG G P PP A P
Sbjct: 243 GPAPPNYSRP--HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 54 QAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGS-------APMITCRVCQSLI 98
+ PP P G P+ P PP SP+ P + S APM+ QS I
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRI 352
Score = 38.5 bits (88), Expect = 0.007
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 26 GPG-GSGAGPGGGLTPSAP----PYGAGKHAPPQAFPPFPEGHPAVLPGEDP--PP 74
GPG G G GPG G P+ P P+G G P PP P G P +PG+ P PP
Sbjct: 229 GPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSGVPPGMPGQPPGGPP 281
Score = 29.3 bits (64), Expect = 4.1
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 16 DGGAGGNGLVGPG-GSGAGPGGGLTPSAPPYGAGKHA-------PPQAFPPFPEGHPAVL 67
D GG GP G G PG L PS P H+ PP A P P P
Sbjct: 5 DPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 68 PGED 71
P ++
Sbjct: 65 PQDN 68
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 45.1 bits (105), Expect = 7e-05
Identities = 37/112 (33%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG-GGLTPSAPPY----------GAGKHAPP 53
G P S P G GG + PG SG PG G P PP A P
Sbjct: 243 GPAPPNYSRP--HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 54 QAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGS-------APMITCRVCQSLI 98
+ PP P G P+ P PP SP+ P + S APM+ QS I
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRI 352
Score = 38.5 bits (88), Expect = 0.007
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 26 GPG-GSGAGPGGGLTPSAP----PYGAGKHAPPQAFPPFPEGHPAVLPGEDP--PP 74
GPG G G GPG G P+ P P+G G P PP P G P +PG+ P PP
Sbjct: 229 GPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSGVPPGMPGQPPGGPP 281
Score = 29.3 bits (64), Expect = 4.1
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 16 DGGAGGNGLVGPG-GSGAGPGGGLTPSAPPYGAGKHA-------PPQAFPPFPEGHPAVL 67
D GG GP G G PG L PS P H+ PP A P P P
Sbjct: 5 DPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 68 PGED 71
P ++
Sbjct: 65 PQDN 68
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 45.1 bits (105), Expect = 7e-05
Identities = 37/112 (33%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG-GGLTPSAPPY----------GAGKHAPP 53
G P S P G GG + PG SG PG G P PP A P
Sbjct: 243 GPAPPNYSRP--HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 54 QAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGS-------APMITCRVCQSLI 98
+ PP P G P+ P PP SP+ P + S APM+ QS I
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRI 352
Score = 38.5 bits (88), Expect = 0.007
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 26 GPG-GSGAGPGGGLTPSAP----PYGAGKHAPPQAFPPFPEGHPAVLPGEDP--PP 74
GPG G G GPG G P+ P P+G G P PP P G P +PG+ P PP
Sbjct: 229 GPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSGVPPGMPGQPPGGPP 281
Score = 29.3 bits (64), Expect = 4.1
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 16 DGGAGGNGLVGPG-GSGAGPGGGLTPSAPPYGAGKHA-------PPQAFPPFPEGHPAVL 67
D GG GP G G PG L PS P H+ PP A P P P
Sbjct: 5 DPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 68 PGED 71
P ++
Sbjct: 65 PQDN 68
>gi|165905613 ring finger and KH domain containing 1 [Homo
sapiens]
Length = 651
Score = 45.1 bits (105), Expect = 7e-05
Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 11 LSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVL 67
L +P GG GG G G G +G PG G P+ PP GA + AP PP P+ A L
Sbjct: 5 LGQPDGGGGGGGGGGGVGAAGEDPGPG--PAPPPEGAQEAAPAPRPPPEPDDAAAAL 59
Score = 37.4 bits (85), Expect = 0.015
Identities = 25/67 (37%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 17 GGAGGNGLVGPGGSGAGPGGGLTPSA-----PPYGAGKHAPPQAFPPFPEGH-PAVLPGE 70
GGAG G G GA GG A PP G APP P G P + P
Sbjct: 72 GGAGDTDEEGAAGDGAAAAGGADGGAAPEPVPPDGPEAGAPPTLAPAVAPGSLPLLDPNA 131
Query: 71 DPPPYSP 77
PPP P
Sbjct: 132 SPPPPPP 138
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 42.0 bits (97), Expect = 6e-04
Identities = 31/76 (40%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 15 IDGGAGGNGL----VGPG-GSGAGPGGGLTPSAPPYG----AGKHAPPQAFPPFPEGHPA 65
++GGAG L GPG G G GPG G PSAP G A A A PP P P
Sbjct: 7 LEGGAGDGPLPPGGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPG 66
Query: 66 VLPGEDPPPYSPLTSP 81
PG P S P
Sbjct: 67 PGPGPGPGSTSRRLDP 82
Score = 30.4 bits (67), Expect = 1.8
Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 4/93 (4%)
Query: 26 GPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLP----GEDPPPYSPLTSP 81
GP G+GPG G P A + P P+ P E P
Sbjct: 396 GPKPLGSGPGPGPAPGAKTEPGARMGPGSGPGALPKTGGTTSPKHGRAEHQAASKAAAKP 455
Query: 82 DSGSAPMITCRVCQSLINVEGKMHQHVVKCGVC 114
+ C +CQ+ +NV K + C C
Sbjct: 456 KTMPKERAICPLCQAELNVGSKSPANYNTCTTC 488
Score = 29.6 bits (65), Expect = 3.1
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
Query: 26 GPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFP---------PFPEGHPA 65
G GSG G G L P +G G AP P FPEGHP+
Sbjct: 2113 GRHGSGGG-GPDLVQYQPQHGPGLSAPQSLVPLRPGLLGNPTFPEGHPS 2160
>gi|115430223 galectin 3 [Homo sapiens]
Length = 250
Score = 42.0 bits (97), Expect = 6e-04
Identities = 30/70 (42%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 18 GAGGNGLVGPGG-SGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHP-AVLPGEDP-PP 74
GA GN G GG GA G APP APP A+P P +P A PG P PP
Sbjct: 24 GAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYPGAPGAYPGAPAPGVYPGPP 83
Query: 75 YSPLTSPDSG 84
P P SG
Sbjct: 84 SGPGAYPSSG 93
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 42.0 bits (97), Expect = 6e-04
Identities = 26/63 (41%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 27 PGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFP--EGHPAVLPGEDPPPYSPLTSPDSG 84
P SGA PG G P+ P A APP A PP P G P P PP P P G
Sbjct: 136 PPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPG 195
Query: 85 SAP 87
P
Sbjct: 196 PGP 198
Score = 36.2 bits (82), Expect = 0.034
Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 17 GGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYS 76
G A G G P S A P T APP G+G P P P P P
Sbjct: 116 GPAPGVGSAPPASSSAPPATPPTSGAPP-GSGPGPTPTPPPAVTSAPPGAPPPTPPSSGV 174
Query: 77 PLTSPDSGSAP 87
P T P +G P
Sbjct: 175 PTTPPQAGGPP 185
Score = 35.4 bits (80), Expect = 0.057
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 19/89 (21%)
Query: 18 GAGGNGLVGPGGSGAGPGGGL--TPSAPPYGAGKHAPPQAFPP------FPEGHPAVLPG 69
G G N GP G G G G P PP+ + PPQ PP P HP
Sbjct: 37 GMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQ 96
Query: 70 EDPPP-----------YSPLTSPDSGSAP 87
+ PPP P +P GSAP
Sbjct: 97 QQPPPPPQDSSKPVVAQGPGPAPGVGSAP 125
Score = 35.0 bits (79), Expect = 0.075
Identities = 25/59 (42%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 29 GSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGSAP 87
G G PG G SAPP A APP A PP P PG P P +TS G+ P
Sbjct: 114 GPGPAPGVG---SAPP--ASSSAPP-ATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPP 166
Score = 33.5 bits (75), Expect = 0.22
Identities = 23/66 (34%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 9 PLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLP 68
P P G G P + A PG P PP PPQA P P PA +P
Sbjct: 137 PTSGAPPGSGPGPTPTPPPAVTSAPPGA--PPPTPPSSGVPTTPPQAGGPPPP--PAAVP 192
Query: 69 GEDPPP 74
G P P
Sbjct: 193 GPGPGP 198
Score = 29.6 bits (65), Expect = 3.1
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 18 GAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYSP 77
G GG G GG G G GG +PP G G + P P P PPP+
Sbjct: 10 GGGGGGFHRRGGGG-GRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQ 68
Query: 78 LTSPDSGSAP 87
P P
Sbjct: 69 QQQPPPQQPP 78
>gi|56676337 transmembrane protein 28 [Homo sapiens]
Length = 472
Score = 41.2 bits (95), Expect = 0.001
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 30 SGAGPGGGLTPSA--PPYGAGKH---APPQA---FPPFPEGHPAVLPGEDPPPYSPLT-- 79
+GA P SA PP+GAG+ PP+A PP P G P+ PG P YS LT
Sbjct: 65 AGARPRARELSSAMRPPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKA 124
Query: 80 SPDSGSAPM 88
+P +GS P+
Sbjct: 125 APAAGSRPV 133
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 41.2 bits (95), Expect = 0.001
Identities = 24/61 (39%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 17 GGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYS 76
GG GG G GPGG G GPGGGL G H P HPA + P
Sbjct: 161 GGPGGGGGGGPGGGGGGPGGGL------LGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGL 214
Query: 77 P 77
P
Sbjct: 215 P 215
Score = 33.1 bits (74), Expect = 0.28
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 20 GGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAP 52
GG GPGG G GPGGG P P G G P
Sbjct: 140 GGGAHDGPGGGG-GPGGGGGPGGGPGGGGGGGP 171
Score = 33.1 bits (74), Expect = 0.28
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 16 DGGAGGNGLVGPGGSGAGPGGG 37
DG GG G G GG G GPGGG
Sbjct: 145 DGPGGGGGPGGGGGPGGGPGGG 166
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 39 TPSAPPYGAGKHAPPQAFPPFPEGHPAVLP---GEDPPPYSPLTSPDSGSA 86
+P+A P+ G PP A PP P+G PA P G P + L SP G A
Sbjct: 1022 SPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPA 1072
Score = 38.5 bits (88), Expect = 0.007
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 11 LSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGE 70
L+ P GA +V P GP ++PP GA PP A PP P+G P P +
Sbjct: 1278 LATPPHKGAPNPAVVTPPSPKGGPA-----TSPPKGAP--TPPAATPPSPKGSPGTPPPK 1330
Query: 71 DPPPYSPLTSPDSGSAPMI 89
P +T P P +
Sbjct: 1331 GAPTPPAVTPPSPKGTPTL 1349
Score = 35.4 bits (80), Expect = 0.057
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 20 GGNGLVGPGGSGAGPGGGLTPSAP------PYGAGKHAPPQAFPPFPEGHPAVLP---GE 70
GG P G+ P TP +P P G PP PP P+G PA P G
Sbjct: 975 GGPATPSPKGAPTPPAA--TPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGA 1032
Query: 71 DPPPYSPLTSPDSGSA 86
PP + SP A
Sbjct: 1033 STPPAATPPSPKGSPA 1048
Score = 35.0 bits (79), Expect = 0.075
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 27 PGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGSA 86
P + P GG A P G PP A PP P+G PA + P +T P +
Sbjct: 966 PAATPPSPKGG---PATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGS 1022
Query: 87 PMIT 90
P T
Sbjct: 1023 PAAT 1026
Score = 34.7 bits (78), Expect = 0.098
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 23 GLVGPGGSGAGPGGGLTPSAPPYGAGKHAP------PQAFPPFPEGHPAVLPGEDPPPYS 76
GL P GA TP +P G +P P A PP P+G PA P + P
Sbjct: 1208 GLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPP 1267
Query: 77 PLTSP 81
T P
Sbjct: 1268 AATPP 1272
Score = 33.5 bits (75), Expect = 0.22
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 35 GGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGSAPMIT 90
GG TPS G PP A PP P+G PA P P P +P S + T
Sbjct: 1069 GGPATPSLK----GAPTPPAATPPSPKGGPAT-PSPKGAPMPPAATPPSPKGGLAT 1119
Score = 33.5 bits (75), Expect = 0.22
Identities = 43/148 (29%), Positives = 57/148 (38%), Gaps = 22/148 (14%)
Query: 38 LTPSAPPYGAGKHAP--PQAFPPFPEGHPAV-LPGEDP--PPYSPLTSPDSGSAP-MITC 91
L P A + K AP P PP PE PA P P PP +P + DS ++P +TC
Sbjct: 1600 LIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTC 1659
Query: 92 RV-------CQSLINVEGKMHQHVVKCGVCNEATPIKNAP--PGKKYVRCPCNCLLICKV 142
++ + L +G V E+TPI AP G + + IC
Sbjct: 1660 KMGATVPQASKGLPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSPPICPD 1719
Query: 143 TSQRIACPRPYCKRIINLGPVHPGPLSP 170
S + P L V P PL P
Sbjct: 1720 PSAKNGSKGP-------LSTVAPAPLLP 1740
Score = 33.1 bits (74), Expect = 0.28
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 27 PGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAV--LPGEDPPPYSPLTSPDSG 84
P + P GG +P + PP A PP P+G PA G PP + SP G
Sbjct: 943 PAATPPSPKGGPATPSPKWAP---TPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGG 999
Query: 85 SA 86
A
Sbjct: 1000 PA 1001
Score = 32.7 bits (73), Expect = 0.37
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 27 PGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAV--LPGEDPPPYSPLTSPDSG 84
P + P G +P+A P G P A P P+G PA L G PP + SP G
Sbjct: 1036 PAATPPSPKG--SPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGG 1093
Query: 85 SA 86
A
Sbjct: 1094 PA 1095
Score = 31.2 bits (69), Expect = 1.1
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 27 PGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGSA 86
P + P GG A P G PP A PP P+G A P + P +P +P S
Sbjct: 1083 PAATPPSPKGG---PATPSPKGAPMPPAATPPSPKGGLATPPHKGAPT-TPAATPPSPKG 1138
Query: 87 PMIT 90
+ T
Sbjct: 1139 GLAT 1142
Score = 31.2 bits (69), Expect = 1.1
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 23 GLVGPGGSGAGPGGGLTPSAPPYGAGKHAP------PQAFPPFPEGHPAVLPGEDPPPYS 76
GL P GA TP +P G +P P A PP P+G A P P +
Sbjct: 1185 GLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLAT-PSPKGAPTT 1243
Query: 77 PLTSPDS 83
P +P S
Sbjct: 1244 PAATPPS 1250
Score = 31.2 bits (69), Expect = 1.1
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 23 GLVGPGGSGAGPGGGLTPSAP------PYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYS 76
GL P GA TP +P P G PP A PP +G A P + P +
Sbjct: 1231 GLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPA 1290
Query: 77 PLTSPDSGSAP 87
+T P P
Sbjct: 1291 VVTPPSPKGGP 1301
Score = 30.8 bits (68), Expect = 1.4
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 27 PGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGSA 86
P + P GGL + PP GA P A PP P+G A P + P +P +P S
Sbjct: 1129 PAATPPSPKGGLA-TPPPKGAP--TTPAATPPSPKGGLATPPPKGAPT-TPAATPPSPKG 1184
Query: 87 PMIT 90
+ T
Sbjct: 1185 GLAT 1188
Score = 30.4 bits (67), Expect = 1.8
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 42 APPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYSPLTSPDS 83
A P G PP A PP P+G PA P P P +P S
Sbjct: 932 ASPSPKGAPTPPAATPPSPKGGPAT-PSPKWAPTPPAATPPS 972
Score = 30.4 bits (67), Expect = 1.8
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 27 PGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGSA 86
P + P GGL + PP+ G P A PP P+G A P + P +P +P S
Sbjct: 1106 PAATPPSPKGGL--ATPPH-KGAPTTPAATPPSPKGGLATPPPKGAPT-TPAATPPSPKG 1161
Query: 87 PMIT 90
+ T
Sbjct: 1162 GLAT 1165
Score = 29.3 bits (64), Expect = 4.1
Identities = 25/80 (31%), Positives = 29/80 (36%), Gaps = 15/80 (18%)
Query: 23 GLVGPGGSGAGPGGGLTPSAPPYGAGKHAP------PQAFPPFPEGHPAV--------LP 68
GL P GA TP +P G +P P A PP P+G A P
Sbjct: 1162 GLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTP 1221
Query: 69 GEDPP-PYSPLTSPDSGSAP 87
PP P L +P AP
Sbjct: 1222 AATPPSPKGGLATPSPKGAP 1241
Score = 28.9 bits (63), Expect = 5.4
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 12/70 (17%)
Query: 27 PGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAV--------LPGEDPP-PYSP 77
P + P GGL + PP GA P A PP P+G A P PP P
Sbjct: 1152 PAATPPSPKGGLA-TPPPKGAP--TTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGG 1208
Query: 78 LTSPDSGSAP 87
L +P AP
Sbjct: 1209 LATPSPKGAP 1218
>gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens]
Length = 485
Score = 40.4 bits (93), Expect = 0.002
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 9 PLLSEPIDGGAGGNGLVGPG-----GSGAGPGGGLTP-SAPPYGAGKHAPPQAFP----- 57
P+L G G GPG GSG+GPG G P S P +G+G H P + P
Sbjct: 145 PVLGSSSGAGHGSGSGSGPGCGSVPGSGSGPGPGSGPGSGPGHGSGSHPGPASGPGPDTG 204
Query: 58 PFPEGHPAVLPG 69
P E P + PG
Sbjct: 205 PDSELSPCIPPG 216
Score = 35.0 bits (79), Expect = 0.075
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 14 PIDGGAGGNGLVGPGGSGAGPGGGLTP---SAPPYGAGKHAPPQAFPPFPEGHPAVLPGE 70
P+ G + G L G+G G G G P S P G+G P + P GH + G
Sbjct: 137 PVPGSSSGPVLGSSSGAGHGSGSGSGPGCGSVP--GSGSGPGPGSGPGSGPGHGS---GS 191
Query: 71 DPPPYS---PLTSPDSGSAPMI 89
P P S P T PDS +P I
Sbjct: 192 HPGPASGPGPDTGPDSELSPCI 213
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 40.4 bits (93), Expect = 0.002
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 27 PGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYSPLTSP 81
P G GP GL P PP G PP+ PP P G P PG PP P P
Sbjct: 467 PPGPPPGPPPGLPPGPPPRGP----PPRLPPPAPPGIPPPRPGMMRPPLVPPLGP 517
Score = 32.7 bits (73), Expect = 0.37
Identities = 27/73 (36%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 26 GPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPF--PEGHPA-------VLPGEDPP--P 74
GP G P L P PP G PP A PPF P G P +LP PP P
Sbjct: 409 GPPPLGPPPAPPLRPPGPPTGLPPGPPPGA-PPFLRPPGMPGLRGPLPRLLPPGPPPGRP 467
Query: 75 YSPLTSPDSGSAP 87
P P G P
Sbjct: 468 PGPPPGPPPGLPP 480
Score = 32.0 bits (71), Expect = 0.63
Identities = 24/63 (38%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 27 PGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGSA 86
PG PG P PP G APP FPP P +P VL PP D SA
Sbjct: 497 PGIPPPRPGMMRPPLVPPLGP---APPGLFPPAPLPNPGVLSA--PPNLIQRPKADDTSA 551
Query: 87 PMI 89
I
Sbjct: 552 ATI 554
Score = 30.0 bits (66), Expect = 2.4
Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 27 PGGSGA-GPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYSPLTSP 81
PG G GP L P PP G PP P P G P PPP P +P
Sbjct: 445 PGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPP----RGPPPRLPPPAP 496
Score = 29.3 bits (64), Expect = 4.1
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 40 PSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYSPLTSP 81
P PP G PP A P P G P LP PP P P
Sbjct: 408 PGPPPLG-----PPPAPPLRPPGPPTGLPPGPPPGAPPFLRP 444
>gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens]
Length = 501
Score = 40.4 bits (93), Expect = 0.002
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 9 PLLSEPIDGGAGGNGLVGPG-----GSGAGPGGGLTP-SAPPYGAGKHAPPQAFP----- 57
P+L G G GPG GSG+GPG G P S P +G+G H P + P
Sbjct: 145 PVLGSSSGAGHGSGSGSGPGCGSVPGSGSGPGPGSGPGSGPGHGSGSHPGPASGPGPDTG 204
Query: 58 PFPEGHPAVLPG 69
P E P + PG
Sbjct: 205 PDSELSPCIPPG 216
Score = 35.0 bits (79), Expect = 0.075
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 14 PIDGGAGGNGLVGPGGSGAGPGGGLTP---SAPPYGAGKHAPPQAFPPFPEGHPAVLPGE 70
P+ G + G L G+G G G G P S P G+G P + P GH + G
Sbjct: 137 PVPGSSSGPVLGSSSGAGHGSGSGSGPGCGSVP--GSGSGPGPGSGPGSGPGHGS---GS 191
Query: 71 DPPPYS---PLTSPDSGSAPMI 89
P P S P T PDS +P I
Sbjct: 192 HPGPASGPGPDTGPDSELSPCI 213
>gi|6912752 zinc finger protein 281 [Homo sapiens]
Length = 895
Score = 40.0 bits (92), Expect = 0.002
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 17 GGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYS 76
GG G +G G GG G+G GGG G + P FP+G V+ PP +
Sbjct: 12 GGTGSSGGSGSGGGGSGGGGG--------GGSSGRRAEMEPTFPQG--MVMFNHRLPPVT 61
Query: 77 PLTSPDSGSAPMITCRVCQS 96
T P +AP C + S
Sbjct: 62 SFTRPAGSAAPPPQCVLSSS 81
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 38.9 bits (89), Expect = 0.005
Identities = 26/68 (38%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 23 GLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEG---------HPAVLPGEDPP 73
G + PG PG G P PP G PP FPP P G P LPG PP
Sbjct: 290 GPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPG--PP 347
Query: 74 PYSPLTSP 81
P +P +P
Sbjct: 348 PGAPPPAP 355
Score = 38.1 bits (87), Expect = 0.009
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 15/74 (20%)
Query: 27 PGGSGAGPGGGLTP---SAPPYGAGKHAPPQAFP----------PFPEGHPAVLPGEDPP 73
PG G P G + P + PP + PP FP P P G P +PG PP
Sbjct: 247 PGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPP 306
Query: 74 PYSPLTSPDSGSAP 87
P P P G P
Sbjct: 307 PGPP--PPQQGPPP 318
Score = 35.4 bits (80), Expect = 0.057
Identities = 27/65 (41%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 20 GGNGLVGPGGSGAGPG---GGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYS 76
GG+ GP G G P G TP PP G PP PP P G P PG+ PP
Sbjct: 213 GGDRFPGPAGPGGPPPPFPAGQTPPRPPLG-----PPG--PPGPPGPPP--PGQVLPP-- 261
Query: 77 PLTSP 81
PL P
Sbjct: 262 PLAGP 266
Score = 33.1 bits (74), Expect = 0.28
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 9 PLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLP 68
PL P G ++ PG P G P PP + PP PP P+ P P
Sbjct: 262 PLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPP-PQQGPPPPP 320
Query: 69 GEDPP-PYSPLTSP 81
G PP P PL P
Sbjct: 321 GPFPPRPPGPLGPP 334
Score = 32.3 bits (72), Expect = 0.48
Identities = 28/84 (33%), Positives = 29/84 (34%), Gaps = 24/84 (28%)
Query: 17 GGAGGNGLVGPGGSGA-------GPGGGLTPSAPPYG------AGKHAPPQAFPPFPEGH 63
G G G GP G + G G G P A P G AG PP PPFP G
Sbjct: 178 GQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPP---PPFPAGQ 234
Query: 64 PAVLPGEDPPPYSPLTSPDSGSAP 87
PP PL P P
Sbjct: 235 T--------PPRPPLGPPGPPGPP 250
Score = 32.3 bits (72), Expect = 0.48
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 33 GP-GGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGSAP 87
GP G LT + PP+ G PP A PP P +PA P PP S + + DS P
Sbjct: 329 GPLGPPLTLAPPPHLPGP--PPGAPPPAPHVNPAFFP---PPTNSGMPTSDSRGPP 379
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 38.9 bits (89), Expect = 0.005
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 14 PIDGGAGGNGLVGP-GGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDP 72
P+ G GG G GP G GP P APP+ G PP +P P+G P P
Sbjct: 501 PVGPGPGGPGPAGPMGPFNPGPFNQGPPGAPPHAGG--PPPHQYP--PQGWGNTYPQWQP 556
Query: 73 P-PYSPLTSPDSGSAP 87
P P+ P + + + P
Sbjct: 557 PAPHDPSKAAAAAADP 572
Score = 37.0 bits (84), Expect = 0.020
Identities = 19/39 (48%), Positives = 19/39 (48%)
Query: 18 GAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAF 56
GAG G GPGG G G G PS PP G G AF
Sbjct: 36 GAGDRGGGGPGGGGPGGGSAGGPSQPPGGGGPGIRKDAF 74
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 38.9 bits (89), Expect = 0.005
Identities = 51/181 (28%), Positives = 67/181 (37%), Gaps = 42/181 (23%)
Query: 19 AGGNGLVGPGGSGAGP-------GGGLTPSAPP--------YGAGKHAPPQAFPPFPEGH 63
AGG GPG P G L P A P +GA + APP+ P P
Sbjct: 118 AGGKTGQGPGSRAPSPRLPNKTISGPLIPPASPRLGNTSEAHGAARTAPPRPNVPAPP-- 175
Query: 64 PAVLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNA 123
P PPP PL P S+P+ T L++ G + K + A P+ A
Sbjct: 176 ----PPTPPPPPPPLPPPLPSSSPIKT-----PLVSPPGPL----TKGNLPVVAPPVPCA 222
Query: 124 PPGKKYVRCPC-NCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVICG 182
PP P L V S + P+ L P+H L P P P+ + CG
Sbjct: 223 PPPPPPPPPPTPPPLPPASVLSDKAVKPQ--------LAPLH---LPPIPPPLPLLPPCG 271
Query: 183 H 183
+
Sbjct: 272 Y 272
>gi|6912446 potassium voltage-gated channel, subfamily H, member 4
[Homo sapiens]
Length = 1017
Score = 38.5 bits (88), Expect = 0.007
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 7 RSPLLSEPIDGGAGGNG-----LVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPE 61
RSP LS+P G + + SGA PGGG P P P P P
Sbjct: 702 RSPRLSQPRSESLGSSSDKTLPSITEAESGAEPGGGPRPRRPLL------LPNLSPARPR 755
Query: 62 GHPAVLPGEDPPPYSPLTSPDS 83
G L GE+ PP+S L S S
Sbjct: 756 GSLVSLLGEELPPFSALVSSPS 777
>gi|59806357 submaxillary gland androgen regulated protein 3
homolog A precursor [Homo sapiens]
Length = 134
Score = 38.5 bits (88), Expect = 0.007
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 27 PGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYSP 77
P G+G P P PPYG G+ PP + PP+ G +P PPPY P
Sbjct: 44 PFGTGFVP----PPHPPPYGPGRFPPPLS-PPYGPGR---IPPSPPPPYGP 86
Score = 34.3 bits (77), Expect = 0.13
Identities = 25/61 (40%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 27 PGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGSA 86
PG S GP G PY G APP P FP G +P PPPY P P S
Sbjct: 19 PGESQRGPRG-------PYPPGPLAPPPP-PCFPFG-TGFVPPPHPPPYGPGRFPPPLSP 69
Query: 87 P 87
P
Sbjct: 70 P 70
Score = 33.5 bits (75), Expect = 0.22
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHP 64
G P LS P G P G G L P PYG G PP P+P G
Sbjct: 61 GRFPPPLSPPYGPGRIPPSPPPPYGPGRIQSHSLPP---PYGPGYPQPPSQPRPYPPG-- 115
Query: 65 AVLPGEDPPPYSPLTSPDSGSAP 87
PP+ P+ SP + P
Sbjct: 116 --------PPFFPVNSPTDPALP 130
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 38.1 bits (87), Expect = 0.009
Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 17 GGAGGNGLVG-PGGSGA----GPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGED 71
G AG G G PG +G GP G P PP AGK P E PA PGE
Sbjct: 866 GSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKG---PRGETGPAGRPGEV 922
Query: 72 PPPYSPLTSPDSGS 85
PP P + + GS
Sbjct: 923 GPPGPPGPAGEKGS 936
Score = 32.0 bits (71), Expect = 0.63
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 16 DGGAGGNGLVGPGGSGAGPG--GGLTPSAPPYGAGKHAPP----QAFPPFPEGHPAVLPG 69
DG G G +GP G PG G PS P G P + PP P G A PG
Sbjct: 760 DGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGF-AGPPG 818
Query: 70 EDPPPYSPLTSPDSGS 85
D P + D+G+
Sbjct: 819 ADGQPGAKGEPGDAGA 834
Score = 31.2 bits (69), Expect = 1.1
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 4 DGERSPLLSEP--IDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPE 61
DG SP E ++G G G GP G PG P P G PP PP P
Sbjct: 97 DGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQP----GLPGPPG--PPGPP 150
Query: 62 GHPAV 66
G P +
Sbjct: 151 GPPGL 155
Score = 31.2 bits (69), Expect = 1.1
Identities = 26/81 (32%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 16 DGGAGGNGLVGPGGS--GAGPGGGLTPSAPPYGAG-------KHAPPQAFPPFPEGHPAV 66
DG G G G G+ AGP G P+ PP G K A A PP G P
Sbjct: 820 DGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGA 879
Query: 67 LPGEDPPPYSPLTSPDSGSAP 87
PP S P P
Sbjct: 880 AGRVGPPGPSGNAGPPGPPGP 900
Score = 31.2 bits (69), Expect = 1.1
Identities = 29/93 (31%), Positives = 30/93 (32%), Gaps = 20/93 (21%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG--------GGLTPSAPPYGAG-------K 49
GE I G G +GL GP G PG G P PP AG
Sbjct: 1097 GETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLN 1156
Query: 50 HAPPQAFPPFPEGH-----PAVLPGEDPPPYSP 77
P PP P G P PG PP P
Sbjct: 1157 GLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPP 1189
Score = 30.4 bits (67), Expect = 1.8
Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGG-----SGAGPGGGLTPSAPPYGAGKHAPPQA 55
G R P S G G NGL GP G G G + P PP G PP A
Sbjct: 1139 GPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSA 1194
Score = 30.0 bits (66), Expect = 2.4
Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 17 GGAGGNGLVGPGGSGAGPGGGLTPSA-----PPYGAGKHAPPQAFPPFPEGHP--AVLPG 69
G G GL GP G GPG P A P AG+ P P P+G P A PG
Sbjct: 473 GEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPG--PAGPKGSPGEAGRPG 530
Query: 70 E 70
E
Sbjct: 531 E 531
Score = 29.6 bits (65), Expect = 3.1
Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 17 GGAGGNGLVGPGGSGAGPGGGLTPSAPP-----YGAGKHAPPQAFPPFPEGHPAVLPGED 71
G AG G G G+ AGP G P+ PP GA A PQ P EG P + GE
Sbjct: 317 GPAGARGNDGATGA-AGPPGPTGPAGPPGFPGAVGAKGEAGPQG-PRGSEG-PQGVRGEP 373
Query: 72 PPP 74
PP
Sbjct: 374 GPP 376
Score = 29.3 bits (64), Expect = 4.1
Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 3 ADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAP-PYGA--GKHAPPQAFPPF 59
A G+ P + G G NG G G PG P AP P GA A A PP
Sbjct: 276 AKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPG 335
Query: 60 PEGHPAVLPG 69
P G PA PG
Sbjct: 336 PTG-PAGPPG 344
Score = 29.3 bits (64), Expect = 4.1
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 17 GGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQA-FPPFPEGHP--AVLPGEDPP 73
G +G +G GP G+ PG P PP AG PP A P +G P A G+ P
Sbjct: 782 GESGPSGPAGPTGARGAPGDRGEP-GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGP 840
Query: 74 P 74
P
Sbjct: 841 P 841
Score = 28.9 bits (63), Expect = 5.4
Identities = 28/81 (34%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 4 DGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAP-------PYGAGKHAPPQAF 56
DG P G AG G GP G+ PG P P G A Q
Sbjct: 562 DGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQG- 620
Query: 57 PPFPEGHPAVLPGEDPPPYSP 77
PP P G PA GE P SP
Sbjct: 621 PPGPAG-PAGERGEQGPAGSP 640
Score = 28.9 bits (63), Expect = 5.4
Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHP 64
G P + G G G GP G PG P A A A PP P G P
Sbjct: 788 GPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAG-P 846
Query: 65 AVLPG 69
A PG
Sbjct: 847 AGPPG 851
Score = 28.9 bits (63), Expect = 5.4
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 16 DGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGEDPP 73
+GG G G GP AG G + P PP AG+ P A PA PG P
Sbjct: 904 EGGKGPRGETGP----AGRPGEVGPPGPPGPAGEKGSPGA------DGPAGAPGTPGP 951
Score = 28.1 bits (61), Expect = 9.1
Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 14/99 (14%)
Query: 1 MAADGERSPLLSEPIDGGAGGNGLVGPGG--SGAGPGGGLTPSAPPYGAGKHAPP--QAF 56
+ A GE P +G G G GP G AGP G P G + P
Sbjct: 349 VGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGA 408
Query: 57 PPFP----------EGHPAVLPGEDPPPYSPLTSPDSGS 85
P FP G P G P +P + D+G+
Sbjct: 409 PGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGA 447
>gi|17511255 poly(A) binding protein interacting protein 1 isoform
1 [Homo sapiens]
Length = 479
Score = 38.1 bits (87), Expect = 0.009
Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 18 GAGGNGLVGPGGSGAGPGGGLTPS-APPYGAGKHAPPQ-AFPPFPEGHPAVLPGEDPPPY 75
GAG G G G GP GG P+ A P +H PPQ P F + P P PPP
Sbjct: 10 GAGRGRSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPG 69
Query: 76 SPLTSPDSGSAP 87
+ P S P
Sbjct: 70 AQCEVPASPQRP 81
>gi|13129048 oligonucleotide/oligosaccharide-binding fold containing
2B [Homo sapiens]
Length = 211
Score = 38.1 bits (87), Expect = 0.009
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 2 AADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQ---AFPP 58
A+ P + P GNGL P G G GP TPS PP + P A PP
Sbjct: 133 ASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPP 192
Query: 59 FPEGHP 64
P +P
Sbjct: 193 GPSSNP 198
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 37.7 bits (86), Expect = 0.012
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 17 GGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQ 54
GG GG G G GG G G GGG + PYG + PPQ
Sbjct: 453 GGGGGGGGGGGGGGGGGGGGGEAGAVAPYGYTR--PPQ 488
Score = 30.0 bits (66), Expect = 2.4
Identities = 39/147 (26%), Positives = 50/147 (34%), Gaps = 41/147 (27%)
Query: 17 GGAGGNGLVGPGGSGAGPGGGLTP---SAPPYG-AGKH----APPQAFP-------PFPE 61
GG GG G GG G G G + P + PP G AG+ AP +P P+P
Sbjct: 460 GGGGGG---GGGGGGGGEAGAVAPYGYTRPPQGLAGQESDFTAPDVWYPGGMVSRVPYPS 516
Query: 62 GHPAVLPGEDPPPYSPLTSP----------------DSGSAPMITCRVCQSLINVEGKMH 105
P + E P + P D P TC +C + H
Sbjct: 517 --PTCVKSEMGPWMDSYSGPYGDMRLETARDHVLPIDYYFPPQKTCLICG---DEASGCH 571
Query: 106 QHVVKCGVCNEATPIKNAPPGKKYVRC 132
+ CG C K A GK+ C
Sbjct: 572 YGALTCGSCK--VFFKRAAEGKQKYLC 596
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.142 0.489
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,229,513
Number of Sequences: 37866
Number of extensions: 1093540
Number of successful extensions: 13279
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 686
Number of HSP's that attempted gapping in prelim test: 7790
Number of HSP's gapped (non-prelim): 4705
length of query: 284
length of database: 18,247,518
effective HSP length: 101
effective length of query: 183
effective length of database: 14,423,052
effective search space: 2639418516
effective search space used: 2639418516
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.