Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KCNIP2 Sequence: fasta or formatted (285aa) NCBI GI: 21361460
Description:

Kv channel interacting protein 2 isoform 1

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [270aa] Kv channel interacting protein 2 isoform 2
alt prot [252aa] Kv channel interacting protein 2 isoform 3
alt prot [227aa] Kv channel interacting protein 2 isoform 4
alt prot [225aa] Kv channel interacting protein 2 isoform 5
alt prot [220aa] Kv channel interacting protein 2 isoform 6
alt prot [184aa] Kv channel interacting protein 2 isoform 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         12           2
 C cysteine            2.1          6           2
 D aspartate           8.1         23           2
 E glutamate           7.7         22           2
 F phenylalanine       6.7         19           2
 G glycine             6.3         18           1
 H histidine           1.8          5           1
 I isoleucine          3.9         11           1
 K lysine              5.6         16           2
 L leucine             9.8         28           2
 M methionine          2.8          8           2
 N asparagine          3.9         11           1
 P proline             5.6         16           2
 Q glutamine           4.9         14           1
 R arginine            6.3         18           1
 S serine              8.1         23           2
 T threonine           4.2         12           1
 V valine              4.9         14           2
 W tryptophan          0.4          1           1
 Y tyrosine            2.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Kv channel interacting protein 2 isoform 1 
KCNIP2                0.928   Kv channel interacting protein 2 isoform 2 
KCNIP2                0.851   Kv channel interacting protein 2 isoform 3 
KCNIP2                0.686   Kv channel interacting protein 2 isoform 5 
KCNIP2                0.677   Kv channel interacting protein 2 isoform 6 
KCNIP2                0.664   Kv channel interacting protein 2 isoform 4 
KCNIP4                0.569   Kv channel interacting protein 4 isoform 1 
KCNIP4                0.566   Kv channel interacting protein 4 isoform 5 
KCNIP4                0.566   Kv channel interacting protein 4 isoform 4 
KCNIP4                0.566   Kv channel interacting protein 4 isoform 2 
KCNIP4                0.542   Kv channel interacting protein 4 isoform 3 
KCNIP4                0.542   Kv channel interacting protein 4 isoform 3 
KCNIP1                0.526   Kv channel interacting protein 1 isoform 3 
KCNIP1                0.524   Kv channel interacting protein 1 isoform 1 
KCNIP1                0.524   Kv channel interacting protein 1 isoform 2 
KCNIP3                0.522   Kv channel interacting protein 3 isoform 2 
KCNIP3                0.522   Kv channel interacting protein 3 isoform 1 
KCNIP2                0.460   Kv channel interacting protein 2 isoform 7 
FREQ                  0.284   frequenin homolog isoform 1 
HPCA                  0.266   hippocalcin 
FREQ                  0.262   frequenin homolog isoform 2 
HPCAL4                0.259   hippocalcin-like protein 4 
VSNL1                 0.257   visinin-like 1 
NCALD                 0.255   neurocalcin delta 
NCALD                 0.255   neurocalcin delta 
NCALD                 0.255   neurocalcin delta 
NCALD                 0.255   neurocalcin delta 
NCALD                 0.255   neurocalcin delta 
NCALD                 0.255   neurocalcin delta 
NCALD                 0.255   neurocalcin delta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press