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Search of human proteins with 153251916
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153251916 hypothetical protein LOC57604 isoform 2 [Homo
sapiens]
(328 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153251916 hypothetical protein LOC57604 isoform 2 [Homo sapiens] 686 0.0
gi|153251913 hypothetical protein LOC57604 isoform 1 [Homo sapiens] 686 0.0
gi|195927056 alkB, alkylation repair homolog 8 [Homo sapiens] 55 9e-08
gi|221139728 pleckstrin homology domain containing, family M (wi... 33 0.35
gi|153791870 zinc finger protein 578 [Homo sapiens] 33 0.45
gi|168229156 NFKB activating protein [Homo sapiens] 32 0.77
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo... 32 1.0
gi|116268101 leucine rich repeat containing 62 [Homo sapiens] 32 1.0
gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens] 31 1.3
gi|223718196 perilipin [Homo sapiens] 31 1.7
gi|223718203 perilipin [Homo sapiens] 31 1.7
gi|8923582 zinc finger protein 446 [Homo sapiens] 30 2.3
gi|221136914 ArfGAP with GTPase domain, ankyrin repeat and PH do... 30 2.9
gi|116256451 amine oxidase (flavin containing) domain 1 [Homo sa... 30 2.9
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 30 3.8
gi|194294554 SET binding protein 1 isoform a [Homo sapiens] 30 3.8
gi|31563521 zinc finger protein 343 [Homo sapiens] 30 3.8
gi|45827809 mitogen-activated protein kinase kinase kinase 6 [Ho... 29 6.6
gi|38488720 DiGeorge syndrome critical region gene 8 [Homo sapiens] 29 6.6
gi|28557798 family with sequence similarity 84, member B [Homo s... 29 6.6
gi|160420295 hypothetical protein LOC85459 [Homo sapiens] 28 8.6
>gi|153251916 hypothetical protein LOC57604 isoform 2 [Homo sapiens]
Length = 328
Score = 686 bits (1770), Expect = 0.0
Identities = 328/328 (100%), Positives = 328/328 (100%)
Query: 1 MARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGRKRQCGYPER 60
MARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGRKRQCGYPER
Sbjct: 1 MARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGRKRQCGYPER 60
Query: 61 GHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEYGFYSTLGKS 120
GHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEYGFYSTLGKS
Sbjct: 61 GHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEYGFYSTLGKS 120
Query: 121 FRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQEPFSTKGQS 180
FRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQEPFSTKGQS
Sbjct: 121 FRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQEPFSTKGQS 180
Query: 181 LDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGVNCVDAGNIE 240
LDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGVNCVDAGNIE
Sbjct: 181 LDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGVNCVDAGNIE 240
Query: 241 DDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFREGELCSLLKE 300
DDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFREGELCSLLKE
Sbjct: 241 DDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFREGELCSLLKE 300
Query: 301 NVSELRILSSGNDHGNWCIIAEKKRGCD 328
NVSELRILSSGNDHGNWCIIAEKKRGCD
Sbjct: 301 NVSELRILSSGNDHGNWCIIAEKKRGCD 328
>gi|153251913 hypothetical protein LOC57604 isoform 1 [Homo sapiens]
Length = 454
Score = 686 bits (1770), Expect = 0.0
Identities = 328/328 (100%), Positives = 328/328 (100%)
Query: 1 MARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGRKRQCGYPER 60
MARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGRKRQCGYPER
Sbjct: 127 MARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGRKRQCGYPER 186
Query: 61 GHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEYGFYSTLGKS 120
GHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEYGFYSTLGKS
Sbjct: 187 GHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEYGFYSTLGKS 246
Query: 121 FRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQEPFSTKGQS 180
FRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQEPFSTKGQS
Sbjct: 247 FRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQEPFSTKGQS 306
Query: 181 LDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGVNCVDAGNIE 240
LDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGVNCVDAGNIE
Sbjct: 307 LDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGVNCVDAGNIE 366
Query: 241 DDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFREGELCSLLKE 300
DDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFREGELCSLLKE
Sbjct: 367 DDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFREGELCSLLKE 426
Query: 301 NVSELRILSSGNDHGNWCIIAEKKRGCD 328
NVSELRILSSGNDHGNWCIIAEKKRGCD
Sbjct: 427 NVSELRILSSGNDHGNWCIIAEKKRGCD 454
>gi|195927056 alkB, alkylation repair homolog 8 [Homo sapiens]
Length = 664
Score = 55.1 bits (131), Expect = 9e-08
Identities = 32/64 (50%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 262 NPDDTMSVED--PQTDVLDSTAFMRYYHVFREGELCSLLKENVSELRILSSGNDHGNWCI 319
NPD VE P S F RYYHVFREGEL + VS++RIL S D GNWC+
Sbjct: 601 NPDKGKPVEPFGPIGSQDPSPVFHRYYHVFREGELEGACR-TVSDVRILQSYYDQGNWCV 659
Query: 320 IAEK 323
I +K
Sbjct: 660 ILQK 663
Score = 33.5 bits (75), Expect = 0.27
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 1 MARVLVPGGQLMIYVWAMEQK 21
+ R+L PGG+ +IYVWAMEQ+
Sbjct: 489 IVRLLRPGGKALIYVWAMEQE 509
>gi|221139728 pleckstrin homology domain containing, family M (with
RUN domain) member 2 [Homo sapiens]
Length = 1019
Score = 33.1 bits (74), Expect = 0.35
Identities = 63/320 (19%), Positives = 111/320 (34%), Gaps = 60/320 (18%)
Query: 44 SESSQSGRKRQCGYPERGHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANI 103
++ + G+K++ E P HP CS+ C+ K+ G R+ S T A+
Sbjct: 316 TKKKKIGKKKKSRSDEEASPLHPACSQKKCA---KQGDGDSRNGSPSLGRDSPDTMLASP 372
Query: 104 SKEGEEEYGFYSTLGKSFRSWFFSRSLDES------TLRKQIERVRPLKNTEVWASSTVT 157
+EGE + +S D S L K I+++ + W S
Sbjct: 373 QEEGEGPSSTTESSERSEPGLLIPEMKDTSMERLGQPLSKVIDQLNGQLDPSTWCSRAEP 432
Query: 158 VQ-----------PSRHSSLDFDH--QEPFSTKGQSLDEEVFVESSSGKHLEWLRAPGTL 204
P R DF P +++ V S G H G
Sbjct: 433 PDQSFRTGSPGDAPERPPLCDFSEGLSAPMDFYRFTVESPSTVTSGGGHHDP--AGLGQP 490
Query: 205 KHL--NGDHQGEMRRNGGGN------FLDSTNTG------VNCVDAGNIEDDNPSASKIL 250
H+ + + G+ GGG D+T ++ V G + + P ++L
Sbjct: 491 LHVPSSPEAAGQEEEGGGGEGQTPRPLEDTTREAQELEAQLSLVREGPVSEPEPGTQEVL 550
Query: 251 RRI--------------SAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFREGELCS 296
++ S VD +P + + + + D ++ + HVFRE E
Sbjct: 551 CQLKRDQPSPCLSSAEDSGVDEGQGSPSEMVHSSEFRVD--NNHLLLLMIHVFRENE--- 605
Query: 297 LLKENVSELRILSSGNDHGN 316
E + ++ +S+G+ GN
Sbjct: 606 ---EQLFKMIRMSTGHMEGN 622
>gi|153791870 zinc finger protein 578 [Homo sapiens]
Length = 590
Score = 32.7 bits (73), Expect = 0.45
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 38 LCSQLFSESSQSGRKRQCGYPERGHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMAR 97
+C ++F+E R R+C E+ PY C+EC S +K R G +P
Sbjct: 263 ICGKVFNEKRYLARHRRCHTSEK--PY--KCNECGKSFSYKSSLTCHRRCHTGEKPYKCN 318
Query: 98 TCFANIS 104
C + S
Sbjct: 319 ECGKSFS 325
>gi|168229156 NFKB activating protein [Homo sapiens]
Length = 415
Score = 32.0 bits (71), Expect = 0.77
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Query: 78 KEQCGSKRSHSVGYEPAMARTCFANISKEGEEEYGFYSTLGKSFRSW--FFSRSLDESTL 135
+ Q RS S E A S YG YS S + W + +ES
Sbjct: 68 RNQSYRSRSRSRSRERPSAPRGIPFASASSSVYYGSYSRPYGSDKPWPSLLDKEREESLR 127
Query: 136 RKQI---ERVRPLKNTEVWASSTVTVQP--SRHSSLDFDHQEPFSTKGQSLDEEVFVESS 190
+K++ ER+ L EVW S +P H+ ++ + + +T + +EE +SS
Sbjct: 128 QKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKKSTTSASTSEEEKKKKSS 187
Query: 191 SGK 193
K
Sbjct: 188 RSK 190
>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
sapiens]
Length = 1242
Score = 31.6 bits (70), Expect = 1.0
Identities = 42/140 (30%), Positives = 53/140 (37%), Gaps = 28/140 (20%)
Query: 46 SSQSGRKRQCGYPERGHPYHPPCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISK 105
SS+S + G PE P PP S+ C RS + G EPA +R+C
Sbjct: 683 SSESPGSQGPGSPEGSAPLEPP-SQQGC-----------RSLAWG-EPAGSRSCPLPAPT 729
Query: 106 EGEEEYGFYST--LGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRH 163
+ G ST LG+ R+ RSL R RP K PS
Sbjct: 730 PAPFKVGALSTEVLGRQHRAALAGRSLSSPPGRANQVPGRPRK-------------PSLG 776
Query: 164 SSLDFDHQEPFSTKGQSLDE 183
+ LD EP GQ LD+
Sbjct: 777 AILDGPSPEPGQQLGQGLDD 796
>gi|116268101 leucine rich repeat containing 62 [Homo sapiens]
Length = 820
Score = 31.6 bits (70), Expect = 1.0
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 257 DSTDFNPDDTMSVEDPQTDVLDSTA--FMRYYHV-FREGELCSLLKENVSELRILSSGND 313
+++ FNPD+ +SVE P + D++A ++ +HV F L ++ S++ IL N+
Sbjct: 271 ENSGFNPDEILSVEPPASSTTDASAGPAIKLHHVTFTSATLVVIIPHPYSKMYILVQYNN 330
>gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens]
Length = 712
Score = 31.2 bits (69), Expect = 1.3
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 246 ASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFREGELCSLLKENVS-- 303
A + R+ + VDST EDP+ S A R YH+ E +LC +V+
Sbjct: 70 ARLVARQWAGVDST----------EDPEEPPDVSWAVARLYHLLAEEKLCPASLRDVAYQ 119
Query: 304 -ELRILSSGNDH 314
+R LSS +DH
Sbjct: 120 EAVRTLSSRDDH 131
>gi|223718196 perilipin [Homo sapiens]
Length = 522
Score = 30.8 bits (68), Expect = 1.7
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 127 SRSLDES-TLRKQIERVRPLKNTEVWASSTVTVQPSRHSS-------------LDFDHQE 172
+R+L++ T+ I V PL + W +S SR S + DH++
Sbjct: 238 ARALEQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHED 297
Query: 173 PFSTKGQSLDEEVFVESSSGKHLEWLRAPGTLKHLNG 209
T+G+ +EE +E+ K E PG L G
Sbjct: 298 QTDTEGEDTEEEEELETEENKFSEVAALPGPRGLLGG 334
>gi|223718203 perilipin [Homo sapiens]
Length = 522
Score = 30.8 bits (68), Expect = 1.7
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 127 SRSLDES-TLRKQIERVRPLKNTEVWASSTVTVQPSRHSS-------------LDFDHQE 172
+R+L++ T+ I V PL + W +S SR S + DH++
Sbjct: 238 ARALEQGHTVAMWIPGVVPLSSLAQWGASVAMQAVSRRRSEVRVPWLHSLAAAQEEDHED 297
Query: 173 PFSTKGQSLDEEVFVESSSGKHLEWLRAPGTLKHLNG 209
T+G+ +EE +E+ K E PG L G
Sbjct: 298 QTDTEGEDTEEEEELETEENKFSEVAALPGPRGLLGG 334
>gi|8923582 zinc finger protein 446 [Homo sapiens]
Length = 450
Score = 30.4 bits (67), Expect = 2.3
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 13/97 (13%)
Query: 16 WAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGRKRQCGYPERGH---PYHP------ 66
+ EQ R F+ + V V +R S +S P +G P+HP
Sbjct: 332 YTCEQCGRGFDWKSVFVIHHRTHTSGPGVQSPGLATGESTEKPPQGEVAFPHHPRRSLTG 391
Query: 67 ----PCSECSCSVCFKEQCGSKRSHSVGYEPAMARTC 99
PC EC CS +K Q R G C
Sbjct: 392 PRSYPCEECGCSFSWKSQLVIHRKSHTGQRRHFCSDC 428
>gi|221136914 ArfGAP with GTPase domain, ankyrin repeat and PH
domain 5 [Homo sapiens]
Length = 686
Score = 30.0 bits (66), Expect = 2.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 243 NPSASKILRRISAVDSTDFNPD-----DTMSVEDPQTDVLD 278
NP AS I +R S D+ +FNP T+ + QTDV++
Sbjct: 83 NPEASTIFQRNSQTDALEFNPSANPEASTIFQRNSQTDVVE 123
>gi|116256451 amine oxidase (flavin containing) domain 1 [Homo
sapiens]
Length = 590
Score = 30.0 bits (66), Expect = 2.9
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 19 EQKNRHFEKQDVLVPWNRALCSQLFSESSQSGRKRQCGYPERGHPYHPPCSECSCSVCFK 78
E+K R EK A C F+ +S+ K GY R YH C E C+ CF
Sbjct: 47 EKKYRKCEKAGCT-----ATCPVCFASASERCAKN--GYTSRW--YHLSCGEHFCNECFD 97
Query: 79 EQCGSKRSHSVGYE 92
RSH GY+
Sbjct: 98 HY---YRSHKDGYD 108
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 29.6 bits (65), Expect = 3.8
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 160 PSRHSSLDFDHQEPFSTKGQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRN- 218
PS + + P +GQ+LD V + W + G+L + H +R +
Sbjct: 2626 PSVSPPIRIESSSPTVVEGQTLDLNCVVARQPQAIITWYKRGGSLPSRHQTHGSHLRLHQ 2685
Query: 219 ----GGGNFLDSTNTGVNCVDAGNIEDDNPSA 246
G ++ N ++ ++A + +PSA
Sbjct: 2686 MSVADSGEYVCRANNNIDALEASIVISVSPSA 2717
>gi|194294554 SET binding protein 1 isoform a [Homo sapiens]
Length = 1596
Score = 29.6 bits (65), Expect = 3.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 159 QPSRHSSLDFDHQEPFSTKGQSLDEEVFVESSSGKHLEW 197
+P +HS+L +D P G +L + +SSS H++W
Sbjct: 184 RPQKHSTLHYDTGLPQDFTGDTLKPKHQQKSSSQNHMDW 222
>gi|31563521 zinc finger protein 343 [Homo sapiens]
Length = 599
Score = 29.6 bits (65), Expect = 3.8
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 22 NRHFEKQDVLVPWNRALCSQLFSESSQSGRKRQCGYPERGHPYHPPCSECSCSVCFKEQC 81
NRH P+ + C + FSE S R ++ E+ PY C EC S C K
Sbjct: 341 NRHQWTHSEEKPYVCSECGRGFSEKSSFIRHQRTHSGEK--PY--VCLECGRSFCDKSTL 396
Query: 82 GSKRSHSVGYEPAMARTCFANISKEGE 108
+ G +P + R C S+ +
Sbjct: 397 RKHQRIHSGEKPYVCRECGRGFSQNSD 423
>gi|45827809 mitogen-activated protein kinase kinase kinase 6 [Homo
sapiens]
Length = 1288
Score = 28.9 bits (63), Expect = 6.6
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 74 SVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEYGFYSTLGKSFRSWFFSRSLDES 133
+VCF R + G + EG Y G+ ++ FFS ++
Sbjct: 313 NVCFHYTFALNRRNRPGDRAKALSVLLPLVQLEGSVAPDLYCMCGRIYKDMFFSSGFQDA 372
Query: 134 TLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLD 167
R+Q W V+PS HS ++
Sbjct: 373 GHREQAYH---------WYRKAFDVEPSLHSGIN 397
>gi|38488720 DiGeorge syndrome critical region gene 8 [Homo sapiens]
Length = 773
Score = 28.9 bits (63), Expect = 6.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 108 EEEYGFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPL 145
E+ + F K FR+W R + RKQ E RP+
Sbjct: 445 EKRFDFEQVTVKKFRTWAERRQFNREMKRKQAESERPI 482
>gi|28557798 family with sequence similarity 84, member B [Homo
sapiens]
Length = 310
Score = 28.9 bits (63), Expect = 6.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 58 PERGHPYHPPCSECSCSVCFKEQCGSKRSHSVG 90
P + PY P E CSV ++++C ++S + G
Sbjct: 68 PPQPQPYDPRLHEVECSVFYRDECIYQKSFAPG 100
>gi|160420295 hypothetical protein LOC85459 [Homo sapiens]
Length = 2601
Score = 28.5 bits (62), Expect = 8.6
Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 24/219 (10%)
Query: 67 PCSECSCSVCFKEQCGSKRSHSVGYEPAMARTCFANISKEGEEEYGFYSTLGKSFRSWFF 126
PC S K Q S R S+G+E R + +G E ++ R
Sbjct: 2258 PCGSNSSECSTKHQLES-RKESMGFEELSKRGVVTMLQSQGLIE----DNKNETCRVLDI 2312
Query: 127 SRSLDESTLRKQIERVRPLKNTEVWASSTVTVQPSRHSSLDFDHQEPFSTK--GQSLDEE 184
+ ++E+ R + V T + A ++T Q ++ + P TK Q + E
Sbjct: 2313 NPQVEETDSRLCVRTVE--MGTSIQAPYSLTTQNEKYFENSAETDIPKITKKLSQLGESE 2370
Query: 185 VFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFLDSTNTGVNCVDAGNIEDDNP 244
+F S S + T + E+ + +T+T + +D N+ +
Sbjct: 2371 LFASSGSFSLQSSIPVWETETGHGIMEEPEL------TLISTTDTSIAEMDFANLTLEEK 2424
Query: 245 S---------ASKILRRISAVDSTDFNPDDTMSVEDPQT 274
S S+ L +SA +++D+ +S+E P+T
Sbjct: 2425 SENEAKCFFQVSEFLPLVSATEASDYPAVSELSIEKPRT 2463
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,132,451
Number of Sequences: 37866
Number of extensions: 657427
Number of successful extensions: 1701
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1684
Number of HSP's gapped (non-prelim): 28
length of query: 328
length of database: 18,247,518
effective HSP length: 103
effective length of query: 225
effective length of database: 14,347,320
effective search space: 3228147000
effective search space used: 3228147000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.