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Search of human proteins with 151101335
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|151101335 coiled-coil domain containing 43 isoform 2 [Homo
sapiens]
(154 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|151101335 coiled-coil domain containing 43 isoform 2 [Homo sa... 305 1e-83
gi|151101337 coiled-coil domain containing 43 isoform 1 [Homo sa... 278 1e-75
gi|94538370 DnaJ (Hsp40) homolog, subfamily C, member 2 isoform ... 34 0.043
gi|193788632 DnaJ (Hsp40) homolog, subfamily C, member 2 isoform... 34 0.043
gi|134152708 arginine and glutamate rich 1 [Homo sapiens] 34 0.043
gi|154689866 hypothetical protein LOC9778 [Homo sapiens] 33 0.097
gi|154689751 hypothetical protein LOC9778 [Homo sapiens] 33 0.097
gi|153792633 hypothetical protein LOC26049 [Homo sapiens] 33 0.097
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 32 0.22
gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Ho... 32 0.28
gi|239746652 PREDICTED: hypothetical protein [Homo sapiens] 32 0.28
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 32 0.28
gi|153791839 sodium channel associated protein 1 [Homo sapiens] 31 0.48
gi|109134347 NY-REN-58 antigen [Homo sapiens] 30 0.63
gi|109134355 NY-REN-58 antigen [Homo sapiens] 30 0.63
gi|5360210 poliovirus receptor related 2 isoform alpha precursor... 30 0.82
gi|21735548 centrosomal protein 2 [Homo sapiens] 30 0.82
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 30 1.1
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 30 1.1
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 30 1.1
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 30 1.1
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 30 1.1
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|154354979 myosin X [Homo sapiens] 30 1.1
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 30 1.1
gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens] 30 1.1
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 30 1.1
gi|110611184 chromodomain helicase DNA binding protein 2 isoform... 30 1.1
gi|221219020 NYD-SP11 protein [Homo sapiens] 29 1.4
gi|32528306 replication factor C large subunit [Homo sapiens] 29 1.4
>gi|151101335 coiled-coil domain containing 43 isoform 2 [Homo
sapiens]
Length = 154
Score = 305 bits (780), Expect = 1e-83
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MAAPSEVAAIAPGEGDGGGGGFGSWLDGRLEALGVDRAVYGAYILGILQEEEEEEKLDAL 60
MAAPSEVAAIAPGEGDGGGGGFGSWLDGRLEALGVDRAVYGAYILGILQEEEEEEKLDAL
Sbjct: 1 MAAPSEVAAIAPGEGDGGGGGFGSWLDGRLEALGVDRAVYGAYILGILQEEEEEEKLDAL 60
Query: 61 QGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQAQIVVKPRMV 120
QGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQAQIVVKPRMV
Sbjct: 61 QGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQAQIVVKPRMV 120
Query: 121 SEEEKQRKAALLAQYADVTDEEDSVPKHQCGRCP 154
SEEEKQRKAALLAQYADVTDEEDSVPKHQCGRCP
Sbjct: 121 SEEEKQRKAALLAQYADVTDEEDSVPKHQCGRCP 154
>gi|151101337 coiled-coil domain containing 43 isoform 1 [Homo
sapiens]
Length = 224
Score = 278 bits (711), Expect = 1e-75
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MAAPSEVAAIAPGEGDGGGGGFGSWLDGRLEALGVDRAVYGAYILGILQEEEEEEKLDAL 60
MAAPSEVAAIAPGEGDGGGGGFGSWLDGRLEALGVDRAVYGAYILGILQEEEEEEKLDAL
Sbjct: 1 MAAPSEVAAIAPGEGDGGGGGFGSWLDGRLEALGVDRAVYGAYILGILQEEEEEEKLDAL 60
Query: 61 QGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQAQIVVKPRMV 120
QGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQAQIVVKPRMV
Sbjct: 61 QGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQAQIVVKPRMV 120
Query: 121 SEEEKQRKAALLAQYADVTDEED 143
SEEEKQRKAALLAQYADVTDEED
Sbjct: 121 SEEEKQRKAALLAQYADVTDEED 143
>gi|94538370 DnaJ (Hsp40) homolog, subfamily C, member 2 isoform 1
[Homo sapiens]
Length = 621
Score = 34.3 bits (77), Expect = 0.043
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 69 EEDSLLNICKEIVERWSETQNVVTKV-KKEDEVQAIATLIEKQAQIVVKPRMVSEEEKQR 127
EE+ C++ RW E QN T+ +K++E+ I TL++ + + EEEK +
Sbjct: 232 EEEKEKAECRD-ERRWIEKQNRATRAQRKKEEMNRIRTLVDNAYSCDPRIKKFKEEEKAK 290
Query: 128 KAALLAQYADVTDEEDSVPKHQ 149
K A A+ +E + Q
Sbjct: 291 KEAEKKAKAEAKRKEQEAKEKQ 312
>gi|193788632 DnaJ (Hsp40) homolog, subfamily C, member 2 isoform 2
[Homo sapiens]
Length = 568
Score = 34.3 bits (77), Expect = 0.043
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 69 EEDSLLNICKEIVERWSETQNVVTKV-KKEDEVQAIATLIEKQAQIVVKPRMVSEEEKQR 127
EE+ C++ RW E QN T+ +K++E+ I TL++ + + EEEK +
Sbjct: 232 EEEKEKAECRD-ERRWIEKQNRATRAQRKKEEMNRIRTLVDNAYSCDPRIKKFKEEEKAK 290
Query: 128 KAALLAQYADVTDEEDSVPKHQ 149
K A A+ +E + Q
Sbjct: 291 KEAEKKAKAEAKRKEQEAKEKQ 312
>gi|134152708 arginine and glutamate rich 1 [Homo sapiens]
Length = 273
Score = 34.3 bits (77), Expect = 0.043
Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 49 QEEEEEEKLD-------ALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQ 101
+ EEEE+K + Q I +EE++ + + + +R E K++DE++
Sbjct: 100 KREEEEKKAEFERQRKIRQQEIEEKLIEEETARRVEELVAKRVEEELE-----KRKDEIE 154
Query: 102 AIATLIEKQAQIVVKPRMVSEEEKQRKAALLAQYADVTDEEDSVPKHQCGR 152
++A+ +++ +++ E E+QR+A L AQ A +EE+ + + R
Sbjct: 155 REVLRRVEEAKRIMEKQLLEELERQRQAELAAQKA--REEEERAKREELER 203
>gi|154689866 hypothetical protein LOC9778 [Homo sapiens]
Length = 1395
Score = 33.1 bits (74), Expect = 0.097
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 24/124 (19%)
Query: 20 GGFGSWLDGRLEALGVDRAVYGAYILGILQEEEEEEKLDALQGILSAFLEEDSLLNICKE 79
G +WL LE G+D +Y Y+L +L + + L E D L K
Sbjct: 37 GPVQTWLGQELEKCGIDAMIYTRYVLSLLLHDSYDYDLQE--------QENDIFLGWEKG 88
Query: 80 IVERWSETQN-----VVTKVKKE----------DEVQAIATLIEKQAQIVVKPRMVSEEE 124
++W +++ + ++KK+ DE I TL+E+ +K +EE
Sbjct: 89 AYKKWGKSKKKCSDLTLEEMKKQAAVQCLRSASDESSGIETLVEELCS-RLKDLQSKQEE 147
Query: 125 KQRK 128
K K
Sbjct: 148 KIHK 151
>gi|154689751 hypothetical protein LOC9778 [Homo sapiens]
Length = 1395
Score = 33.1 bits (74), Expect = 0.097
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 24/124 (19%)
Query: 20 GGFGSWLDGRLEALGVDRAVYGAYILGILQEEEEEEKLDALQGILSAFLEEDSLLNICKE 79
G +WL LE G+D +Y Y+L +L + + L E D L K
Sbjct: 37 GPVQTWLGQELEKCGIDAMIYTRYVLSLLLHDSYDYDLQE--------QENDIFLGWEKG 88
Query: 80 IVERWSETQN-----VVTKVKKE----------DEVQAIATLIEKQAQIVVKPRMVSEEE 124
++W +++ + ++KK+ DE I TL+E+ +K +EE
Sbjct: 89 AYKKWGKSKKKCSDLTLEEMKKQAAVQCLRSASDESSGIETLVEELCS-RLKDLQSKQEE 147
Query: 125 KQRK 128
K K
Sbjct: 148 KIHK 151
>gi|153792633 hypothetical protein LOC26049 [Homo sapiens]
Length = 670
Score = 33.1 bits (74), Expect = 0.097
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 58 DALQGILSAFLEEDSLLNICKEIVERWSETQNVV-TKVKKEDEVQAIATLIEKQAQIVVK 116
D Q IL+ F EDSL + + ++W ++V T V + ++ ++TL E+ V+
Sbjct: 61 DQTQKILALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVSTLGERVVLYVLN 120
Query: 117 PRMVSEEEKQR 127
+ ++E +R
Sbjct: 121 RIIYRKQEMER 131
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 32.0 bits (71), Expect = 0.22
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 16/108 (14%)
Query: 49 QEEEEEEKLDALQGILSAFLEEDSLLNIC--------KEIVERWSETQNVVTKVKKEDEV 100
Q+ EEEE++ L+ + + EE+ L KE ER + ++TK ++E
Sbjct: 358 QKREEEERIKRLEELEAKRKEEERLEQEKRERKKQKEKERKERLKKEGKLLTKSQREARA 417
Query: 101 QAIATLIEKQAQIVVKP--------RMVSEEEKQRKAALLAQYADVTD 140
+A ATL QAQ V P R + E++K++K + +V++
Sbjct: 418 RAEATLKLLQAQGVEVPSKDSLPKKRPIYEDKKRKKIPQQLESKEVSE 465
>gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Homo
sapiens]
Length = 2378
Score = 31.6 bits (70), Expect = 0.28
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 58 DALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQ 110
DA+QGI + ED++ + KE+ ++ V V ED VQ +A +E Q
Sbjct: 1087 DAVQGIAN----EDAVHGVAKEVAAHGVANEDPVQGVANEDAVQGVANEVEVQ 1135
Score = 31.6 bits (70), Expect = 0.28
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 58 DALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQ 110
DA+QGI + ED++ + KE+ ++ V V ED VQ +A +E Q
Sbjct: 1673 DAVQGIAN----EDAVHGVAKEVAAHGVANEDPVQGVANEDAVQGVANEVEVQ 1721
Score = 31.2 bits (69), Expect = 0.37
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 58 DALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQ 110
DA+QGI + ED++ + KE+ ++ V V ED VQ +A +E Q
Sbjct: 731 DAVQGIAN----EDAVHGVAKEVAAHGVANEDPVQGVANEDVVQGVANEVEVQ 779
Score = 29.3 bits (64), Expect = 1.4
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 56 KLDALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQ 110
K DA+QGI + ED+ I KE + ++ V V ED VQ +A +E Q
Sbjct: 196 KEDAVQGIAN----EDAAQGIAKEDPVQGVANEDPVQGVANEDAVQGVANEVEVQ 246
Score = 28.1 bits (61), Expect = 3.1
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 58 DALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQAQIVVK 116
DA QGI + ED+ +I KE + ++ + KED VQ IA E AQ + K
Sbjct: 162 DAAQGIAN----EDAAQDIAKEDAAQDIANEDAAQGISKEDAVQGIAN--EDAAQGIAK 214
Score = 28.1 bits (61), Expect = 3.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 56 KLDALQGILS-----AFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQ 110
K DA+QGI + +ED++ I E + ++ V V ED +Q +A +E Q
Sbjct: 1265 KEDAVQGIANEDAAQGIAKEDAVQGIANEDAAQGIAKEDPVQGVANEDPIQGVANEVEVQ 1324
Score = 27.7 bits (60), Expect = 4.1
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 58 DALQGILS-----AFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQ 110
DA QG+ + ED+ + E+ + ++ V V ED VQ +A +E Q
Sbjct: 943 DAAQGVANEDAAHGVANEDAAQGVANEVAAQGVANEDAVHGVANEDAVQGVANEVEVQ 1000
Score = 27.7 bits (60), Expect = 4.1
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 46 GILQEEEEEE--KLDALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAI 103
GI E+ ++ DA QGI +ED++ I E + ++ V V ED VQ +
Sbjct: 1352 GIANEDAAQDIANEDAAQGIS----KEDAVQGIANEDAAQGIAKEDPVQGVANEDAVQGV 1407
Query: 104 ATLIEKQ 110
A +E Q
Sbjct: 1408 ANEVEVQ 1414
>gi|239746652 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1513
Score = 31.6 bits (70), Expect = 0.28
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 58 DALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQ 110
DA+QGI + ED++ + KE+ ++ V V ED VQ +A +E Q
Sbjct: 429 DAVQGIAN----EDAVHGVAKEVAAHGVANEDPVQGVANEDAVQGVANEVEVQ 477
Score = 31.6 bits (70), Expect = 0.28
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 58 DALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQ 110
DA+QGI + ED++ + KE+ ++ V V ED VQ +A +E Q
Sbjct: 736 DAVQGIAN----EDAVHGVAKEVAAHGVANEDPVQGVANEDAVQGVANEVEVQ 784
Score = 26.6 bits (57), Expect = 9.1
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 58 DALQGILSA-----FLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQ 110
DA QGI + ED+ I KE + ++ V V ED VQ +A +E Q
Sbjct: 970 DAAQGIANEDAAQDIANEDAAQGIAKEDPVQGVANEDPVQGVANEDAVQGVANEVEVQ 1027
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 31.6 bits (70), Expect = 0.28
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 1/116 (0%)
Query: 11 APGEGDGGGGGFGSWLDGRLEALGVDRAVYGAYILGILQEEEEEEKLDALQGILSAFLEE 70
+P G G G G L G+ AV A + + Q +E+E+ + Q + EE
Sbjct: 636 SPNHGSGSDGSSTRTGHGPLPVPGLLPAVQRALFVRLTQRYQEDEEQTSTQPHRAPSKEE 695
Query: 71 DSLLN-ICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQAQIVVKPRMVSEEEK 125
D +N E S ++++ ++K+ E + PR+ E+ K
Sbjct: 696 DDTVNWYSSSEEEEGSSVKSILKTLQKQTETLRNQQQPSTELSTPTDPRLAKEKSK 751
>gi|153791839 sodium channel associated protein 1 [Homo sapiens]
Length = 688
Score = 30.8 bits (68), Expect = 0.48
Identities = 21/84 (25%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 47 ILQEEEEEEKLDALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAI-AT 105
+L+E+++EE ++ ++ +S F+ +D+ + KE+ + ++++ +E+ A+
Sbjct: 351 LLEEKQKEEDIEKMKETVSRFV-QDATIRTKKEVANTKKQCNIQISRL--TEELSALQME 407
Query: 106 LIEKQAQI--VVKPRMVSEEEKQR 127
EKQ QI V+K + EEE ++
Sbjct: 408 CAEKQGQIERVIKEKKAVEEELEK 431
>gi|109134347 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 30.4 bits (67), Expect = 0.63
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 15/108 (13%)
Query: 50 EEEEEEKLDALQGILSAFLE-------EDSLLN---ICKEIVERWSETQNVVTKVKKEDE 99
E+E+ E D Q I S ++ E+ LLN + KE+VER + ++ +
Sbjct: 462 EKEKNENSDLKQQISSLQIQVTSLAQSENDLLNSNQMLKEMVERLKQECRNFRSQAEKAQ 521
Query: 100 VQAIATLIEKQAQIV-----VKPRMVSEEEKQRKAALLAQYADVTDEE 142
++A TL EKQ Q + + R+ EEK +A Q A + ++
Sbjct: 522 LEAEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAAIAQKK 569
>gi|109134355 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 30.4 bits (67), Expect = 0.63
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 15/108 (13%)
Query: 50 EEEEEEKLDALQGILSAFLE-------EDSLLN---ICKEIVERWSETQNVVTKVKKEDE 99
E+E+ E D Q I S ++ E+ LLN + KE+VER + ++ +
Sbjct: 462 EKEKNENSDLKQQISSLQIQVTSLAQSENDLLNSNQMLKEMVERLKQECRNFRSQAEKAQ 521
Query: 100 VQAIATLIEKQAQIV-----VKPRMVSEEEKQRKAALLAQYADVTDEE 142
++A TL EKQ Q + + R+ EEK +A Q A + ++
Sbjct: 522 LEAEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAAIAQKK 569
>gi|5360210 poliovirus receptor related 2 isoform alpha precursor
[Homo sapiens]
Length = 479
Score = 30.0 bits (66), Expect = 0.82
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 11 APGEGDGGGGGFGSWLDGRLEALGVDRAVYGAYIL-GILQ-----EEEEEEKLDALQGIL 64
+PG GG G G + D + + LG V+ ++ G ++ EEEEEE+ A +G++
Sbjct: 393 SPGGAGGGASGDGGFYDPKAQVLGNGDPVFWTPVVPGPMEPDGKDEEEEEEEEKAEKGLM 452
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 30.0 bits (66), Expect = 0.82
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 49 QEEEEEEKLDALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKK-EDEVQAIATLI 107
QEE +EK DALQG L + ER E Q+ + ++ E+E+ +
Sbjct: 1832 QEERVKEKADALQGALE---------QAHMTLKERHGELQDHKEQARRLEEELAVEGRRV 1882
Query: 108 EKQAQIVVKPRMVSEEEKQRKAALLAQYADVTDEED 143
+ +++ R S E+++ AL Q A+ E +
Sbjct: 1883 QALEEVLGDLRAESREQEKALLALQQQCAEQAQEHE 1918
Score = 28.1 bits (61), Expect = 3.1
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 47 ILQEEEEEEKLDALQGILSAFLEE-DSLLNICKEIVERWSETQNVVTKVKKEDEVQAIAT 105
+ + E+ E+L + L+ LE D L + KE ++ + + TK+ +ED Q +
Sbjct: 1632 VKSQREQIEELQRQKEHLTQDLERRDQELMLQKERIQVLEDQRTRQTKILEEDLEQIKLS 1691
Query: 106 LIEKQAQIVVKPRMVSEEEKQRKAALLAQ 134
L E+ ++ + +++ E ++ K AQ
Sbjct: 1692 LRERGRELTTQRQLMQERAEEGKGPSKAQ 1720
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 29.6 bits (65), Expect = 1.1
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 42 AYILGILQ-----EEEEEEKLDALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKK 96
A++ IL+ EEE+E D + A EE+ L + ++ R E +N K +
Sbjct: 1245 AFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRL 1304
Query: 97 EDEVQAIATLIEKQAQIVVKPRMVSEEEKQRKAALLAQYADVTDEEDSVPKHQ 149
+E + + +I+ A++ R+ EEE+++ +++ D DS+ + Q
Sbjct: 1305 MEEDELPSWIIKDDAEV---ERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQ 1354
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 29.6 bits (65), Expect = 1.1
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 42 AYILGILQ-----EEEEEEKLDALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKK 96
A++ IL+ EEE+E D + A EE+ L + ++ R E +N K +
Sbjct: 1245 AFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRL 1304
Query: 97 EDEVQAIATLIEKQAQIVVKPRMVSEEEKQRKAALLAQYADVTDEEDSVPKHQ 149
+E + + +I+ A++ R+ EEE+++ +++ D DS+ + Q
Sbjct: 1305 MEEDELPSWIIKDDAEV---ERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQ 1354
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 29.6 bits (65), Expect = 1.1
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 42 AYILGILQ-----EEEEEEKLDALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKK 96
A++ IL+ EEE+E D + A EE+ L + ++ R E +N K +
Sbjct: 1245 AFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRL 1304
Query: 97 EDEVQAIATLIEKQAQIVVKPRMVSEEEKQRKAALLAQYADVTDEEDSVPKHQ 149
+E + + +I+ A++ R+ EEE+++ +++ D DS+ + Q
Sbjct: 1305 MEEDELPSWIIKDDAEV---ERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQ 1354
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 29.6 bits (65), Expect = 1.1
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 42 AYILGILQ-----EEEEEEKLDALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKK 96
A++ IL+ EEE+E D + A EE+ L + ++ R E +N K +
Sbjct: 1245 AFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRL 1304
Query: 97 EDEVQAIATLIEKQAQIVVKPRMVSEEEKQRKAALLAQYADVTDEEDSVPKHQ 149
+E + + +I+ A++ R+ EEE+++ +++ D DS+ + Q
Sbjct: 1305 MEEDELPSWIIKDDAEV---ERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQ 1354
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 29.6 bits (65), Expect = 1.1
Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 4 PSEVA-AIAPGEGDGGGGGFGS--WLDGR 29
P E A AIAPG GGGGG G+ W GR
Sbjct: 73 PEEPAPAIAPGGSGGGGGGCGAQHWAAGR 101
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 29.6 bits (65), Expect = 1.1
Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 4 PSEVA-AIAPGEGDGGGGGFGS--WLDGR 29
P E A AIAPG GGGGG G+ W GR
Sbjct: 73 PEEPAPAIAPGGSGGGGGGCGAQHWAAGR 101
>gi|154354979 myosin X [Homo sapiens]
Length = 2058
Score = 29.6 bits (65), Expect = 1.1
Identities = 19/94 (20%), Positives = 45/94 (47%)
Query: 49 QEEEEEEKLDALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIE 108
+EEE E + + + L A EE++ E +++ + + +++K+ E + + ++
Sbjct: 833 EEEERERERERREAELRAQQEEETRKQQELEALQKSQKEAELTRELEKQKENKQVEEILR 892
Query: 109 KQAQIVVKPRMVSEEEKQRKAALLAQYADVTDEE 142
+ +I RM ++E A L + + D+E
Sbjct: 893 LEKEIEDLQRMKEQQELSLTEASLQKLQERRDQE 926
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 29.6 bits (65), Expect = 1.1
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 45 LGILQEEEEEEKLDALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIA 104
L IL +E +L G+L A E LL +E V+RW + +K+ + +
Sbjct: 1302 LDILPLQEANAELSEKSGMLQA---EKKLL---EEDVKRWKARNQHLVSQQKDPDTEEYR 1355
Query: 105 TLIEKQAQIVVKPRMVSEEEKQRKAALLAQYADVTDEEDSV 145
L+ ++ + + ++EE + KA + A +T+ ++ +
Sbjct: 1356 KLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLI 1396
>gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens]
Length = 2115
Score = 29.6 bits (65), Expect = 1.1
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 54 EEKLDALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQAQI 113
EEK + LQG LS E+ L + + E V ++ E Q ATL Q+
Sbjct: 377 EEKNEILQGKLSQL--EEHLSQLQDNPPQEKGEVLGDVLQL--ETLKQEAATLAANNTQL 432
Query: 114 VVKPRMVSEEEKQRKAALLAQYADVTDEEDSV 145
+ M+ E Q++A LLA+ +E+ +
Sbjct: 433 QARVEMLETERGQQEAKLLAERGHFEEEKQQL 464
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 29.6 bits (65), Expect = 1.1
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 82 ERWSET-----QNVVTKVKKEDEVQAIATLIEKQAQIVVKPRMVSEEEKQRKAALLAQYA 136
E+W + Q T + E E + + + V KPR+ + + QR +
Sbjct: 149 EKWKQEPSEDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSS 208
Query: 137 DVTDEEDSVPKHQCGR 152
D D++D PK Q R
Sbjct: 209 DEDDDDDEAPKRQTRR 224
>gi|110611184 chromodomain helicase DNA binding protein 2 isoform 2
[Homo sapiens]
Length = 501
Score = 29.6 bits (65), Expect = 1.1
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 82 ERWSET-----QNVVTKVKKEDEVQAIATLIEKQAQIVVKPRMVSEEEKQRKAALLAQYA 136
E+W + Q T + E E + + + V KPR+ + + QR +
Sbjct: 149 EKWKQEPSEDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSS 208
Query: 137 DVTDEEDSVPKHQCGR 152
D D++D PK Q R
Sbjct: 209 DEDDDDDEAPKRQTRR 224
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 29.3 bits (64), Expect = 1.4
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 48 LQEEEEEEKLDALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLI 107
L EEEEE+ + EE + +E ER E + +V+KE+E +
Sbjct: 2243 LSSEEEEEREEE---------EEREEEEVREEEEERKEEEEGEEKQVEKEEEEKKKKKKE 2293
Query: 108 EKQAQIVVKPRMVSEEEKQRKAALLAQYADVTDEEDS 144
+K+ ++ K + E+E+ +D +EE+S
Sbjct: 2294 KKKEEVQEKEEVFEEKEEIMSEEETESLSDEEEEEES 2330
Score = 29.3 bits (64), Expect = 1.4
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 49 QEEEEEEKLDALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIE 108
+EEEE E+ + + EE+ ++ VE+ E + K KK++EVQ + E
Sbjct: 2252 EEEEEREEEEVREEEEERKEEEEGE----EKQVEKEEEEKKKKKKEKKKEEVQEKEEVFE 2307
Query: 109 KQAQIV--VKPRMVSEEEKQRKAALLAQYAD 137
++ +I+ + +S+EE++ ++ L + D
Sbjct: 2308 EKEEIMSEEETESLSDEEEEEESCSLEEEVD 2338
Score = 27.3 bits (59), Expect = 5.3
Identities = 17/82 (20%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 48 LQEEEEEEKLDALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLI 107
+++EEEE+K + E++ + +EI+ ET+++ + ++E+E ++ +
Sbjct: 2280 VEKEEEEKKKKKKEKKKEEVQEKEEVFEEKEEIMSE-EETESLSDE-EEEEESCSLEEEV 2337
Query: 108 EKQAQIVVKPRMVSEEEKQRKA 129
+++ +I+ K + +E++RK+
Sbjct: 2338 DREKEILKKEKQFKLQEQRRKS 2359
>gi|32528306 replication factor C large subunit [Homo sapiens]
Length = 1147
Score = 29.3 bits (64), Expect = 1.4
Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 26 LDGRLEALGVDRAV-----YGAYILG---------ILQEEEEEEKLDALQGILSAFLEED 71
+ G LE++ D A YG + G ++ + + K D + + ++ED
Sbjct: 414 ITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDED 473
Query: 72 SLLNICKEIVERWSETQNVV-TKVKKEDEVQAIATLIEKQAQIVVKPRMVSEEEKQRKAA 130
LLN+ + + + S+ + V T++KKE +++ + + + + SE +K R +
Sbjct: 474 GLLNLIRTMPGKKSKYEIAVETEMKKESKLERTPQKNVQGKRKISPSKKESESKKSRPTS 533
Query: 131 LLAQYADVTDEEDSV 145
A +E V
Sbjct: 534 KRDSLAKTIKKETDV 548
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.132 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,268,114
Number of Sequences: 37866
Number of extensions: 283482
Number of successful extensions: 2057
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1918
Number of HSP's gapped (non-prelim): 201
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.