Guide to the Human Genome
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Name: TMX1 Sequence: fasta or formatted (280aa) NCBI GI: 151101292
Description:

thioredoxin domain containing 1

Referenced in:

Glutathione Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         18           1
 C cysteine            2.5          7           1
 D aspartate           4.6         13           1
 E glutamate           9.3         26           3
 F phenylalanine       4.6         13           1
 G glycine             6.1         17           1
 H histidine           1.1          3           1
 I isoleucine          4.6         13           2
 K lysine              5.0         14           2
 L leucine            10.4         29           3
 M methionine          2.1          6           1
 N asparagine          2.9          8           1
 P proline             7.1         20           1
 Q glutamine           3.6         10           1
 R arginine            5.0         14           3
 S serine              8.9         25           2
 T threonine           3.9         11           1
 V valine              5.4         15           1
 W tryptophan          3.9         11           1
 Y tyrosine            2.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thioredoxin domain containing 1 
TMX4                  0.352   thioredoxin-related transmembrane protein 4 
TMX3                  0.079   thioredoxin domain containing 10 
PDIA6                 0.075   protein disulfide isomerase A6 
PDIA4                 0.071   protein disulfide isomerase A4 
PDIA3                 0.068   protein disulfide-isomerase A3 precursor 
PDIA5                 0.066   protein disulfide isomerase A5 
P4HB                  0.062   prolyl 4-hydroxylase, beta subunit precursor 
DNAJC10               0.052   DnaJ (Hsp40) homolog, subfamily C, member 10 
PDIA2                 0.052   protein disulfide isomerase A2 
TXNDC5                0.050   thioredoxin domain containing 5 isoform 1 precursor ...
TXNDC5                0.050   thioredoxin domain containing 5 isoform 3 
ERP44                 0.037   thioredoxin domain containing 4 (endoplasmic reticul...
TXN2                  0.029   thioredoxin 2 precursor 
TMX2                  0.027   thioredoxin domain containing 14 isoform 1 
TXNDC11               0.025   thioredoxin domain containing 11 
TMX2                  0.023   thioredoxin domain containing 14 isoform 2 
GLRX3                 0.021   glutaredoxin 3 
C3orf44               0.020   hypothetical protein LOC131831 
CCDC108               0.020   coiled-coil domain containing 108 isoform 1 
QSOX2                 0.018   quiescin Q6 sulfhydryl oxidase 2 
QSOX1                 0.018   quiescin Q6 sulfhydryl oxidase 1 isoform b 
QSOX1                 0.018   quiescin Q6 sulfhydryl oxidase 1 isoform a 
CLSTN1                0.014   calsyntenin 1 isoform 1 
CLSTN1                0.014   calsyntenin 1 isoform 2 
SHROOM4               0.014   shroom family member 4 
HMGB1                 0.014   high-mobility group box 1 
SETD1A                0.014   SET domain containing 1A 
EHMT2                 0.014   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.014   euchromatic histone-lysine N-methyltransferase 2 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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