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Search of human proteins with 150170696
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|150170696 hypothetical protein LOC389073 [Homo sapiens]
(193 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|150170696 hypothetical protein LOC389073 [Homo sapiens] 384 e-107
gi|167614502 protein phosphatase 1, regulatory (inhibitor) subun... 29 2.8
gi|48255933 high-mobility group nucleosome binding domain 1 [Hom... 28 3.7
gi|223646113 Sp9 transcription factor homolog [Homo sapiens] 28 4.8
gi|27477134 nucleoporin 210 [Homo sapiens] 28 4.8
gi|66363697 pirin [Homo sapiens] 28 4.8
gi|4505823 pirin [Homo sapiens] 28 4.8
gi|5453894 catalytic phosphatidylinositol 3-kinase beta [Homo sa... 28 6.3
gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Ho... 28 6.3
gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Hom... 28 6.3
gi|110735404 protein tyrosine phosphatase, receptor type, U isof... 28 6.3
gi|110735406 protein tyrosine phosphatase, receptor type, U isof... 28 6.3
gi|110735402 protein tyrosine phosphatase, receptor type, U isof... 28 6.3
gi|224451082 cytospin A [Homo sapiens] 27 8.3
gi|224451080 cytospin A [Homo sapiens] 27 8.3
>gi|150170696 hypothetical protein LOC389073 [Homo sapiens]
Length = 193
Score = 384 bits (987), Expect = e-107
Identities = 193/193 (100%), Positives = 193/193 (100%)
Query: 1 MERRLIKKEMKKLLGDYIGIRLRENEFDPKGRRQLTFLDDMAHYDLAISVALQWLDPSED 60
MERRLIKKEMKKLLGDYIGIRLRENEFDPKGRRQLTFLDDMAHYDLAISVALQWLDPSED
Sbjct: 1 MERRLIKKEMKKLLGDYIGIRLRENEFDPKGRRQLTFLDDMAHYDLAISVALQWLDPSED 60
Query: 61 LTWLEWEELKIPLHGRPIYPNRREREAMILSSYAGILMNSIPIEEVFKIYGADSSADSGT 120
LTWLEWEELKIPLHGRPIYPNRREREAMILSSYAGILMNSIPIEEVFKIYGADSSADSGT
Sbjct: 61 LTWLEWEELKIPLHGRPIYPNRREREAMILSSYAGILMNSIPIEEVFKIYGADSSADSGT 120
Query: 121 IKVPRVSSLRLSLHPFAMLTAPKAAAYARKQSVKSRKVTTNKNATSISAKEANATEWKSS 180
IKVPRVSSLRLSLHPFAMLTAPKAAAYARKQSVKSRKVTTNKNATSISAKEANATEWKSS
Sbjct: 121 IKVPRVSSLRLSLHPFAMLTAPKAAAYARKQSVKSRKVTTNKNATSISAKEANATEWKSS 180
Query: 181 QRFSDTQPKHKVT 193
QRFSDTQPKHKVT
Sbjct: 181 QRFSDTQPKHKVT 193
>gi|167614502 protein phosphatase 1, regulatory (inhibitor) subunit 3A
[Homo sapiens]
Length = 1122
Score = 28.9 bits (63), Expect = 2.8
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 35 LTFLDDMAHYDLAISVALQWLDPSEDLTWLEWEE 68
L FL + HYDL I + L L+WL WEE
Sbjct: 1083 LIFLITVYHYDLMIGLTFYVLS----LSWLSWEE 1112
>gi|48255933 high-mobility group nucleosome binding domain 1 [Homo
sapiens]
Length = 100
Score = 28.5 bits (62), Expect = 3.7
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 114 SSADSGTIKVPRVSSLRLSLHPFAMLTA-PKAAAYARKQSVKSRKVTTNKNATSISAKEA 172
SSA+ + P+ S RLS P A + A PK AA K S K + + A A+ A
Sbjct: 7 SSAEGAAKEEPKRRSARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQAEVA 66
Query: 173 N 173
N
Sbjct: 67 N 67
>gi|223646113 Sp9 transcription factor homolog [Homo sapiens]
Length = 484
Score = 28.1 bits (61), Expect = 4.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 111 GADSSADSGTIKVPRVSSLRLSLHPFAMLTAPKAAAYA 148
G+DS D+ ++ PR S L LH + A AAA A
Sbjct: 423 GSDSDTDASNLETPRSESPDLILHDSGVSAARAAAAAA 460
>gi|27477134 nucleoporin 210 [Homo sapiens]
Length = 1887
Score = 28.1 bits (61), Expect = 4.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 9 EMKKLLGDYIGIRLRENEFDPKGRRQLTFLDDMAHYDLAISVALQ 53
+++ +G + + LR + P G ++ L D +H+DLA+ V Q
Sbjct: 544 QVEARVGQALELPLRISGLMPGGASEVVTLSDCSHFDLAVEVENQ 588
>gi|66363697 pirin [Homo sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 4.8
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 52 LQWLDPSEDLTWLEWEELKIPLHGRPIYPNRREREAMILSSYAGILMNSIP 102
LQW+ + E + P HG ++ N R E M+ Y + IP
Sbjct: 90 LQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSSEKMVEPQYQELKSEEIP 140
>gi|4505823 pirin [Homo sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 4.8
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 52 LQWLDPSEDLTWLEWEELKIPLHGRPIYPNRREREAMILSSYAGILMNSIP 102
LQW+ + E + P HG ++ N R E M+ Y + IP
Sbjct: 90 LQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSSEKMVEPQYQELKSEEIP 140
>gi|5453894 catalytic phosphatidylinositol 3-kinase beta [Homo
sapiens]
Length = 1070
Score = 27.7 bits (60), Expect = 6.3
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 61 LTWLEWEELKIPLHGRPIYPNRREREAMILSSYAGILMNSIPIEEVFKIYGADSSADSGT 120
L+W++W + P P P E + Y G L+ ++ E ++ S +
Sbjct: 166 LSWMDWLKQTYPPEHEPSIPENLEDKL-----YGGKLIVAVHFENCQDVFSFQVSPNMNP 220
Query: 121 IKVPRVS-SLRLSLH 134
IKV ++ RL++H
Sbjct: 221 IKVNELAIQKRLTIH 235
>gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Homo
sapiens]
Length = 1687
Score = 27.7 bits (60), Expect = 6.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 4 RLIKKEMKKLLGDYIGIRLRENEFDPKGRRQLTFLDDMAHY 44
+L+KK M+KL I L E+E DP+ + +D++ H+
Sbjct: 239 QLMKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDELYHF 279
>gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Homo
sapiens]
Length = 1659
Score = 27.7 bits (60), Expect = 6.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 4 RLIKKEMKKLLGDYIGIRLRENEFDPKGRRQLTFLDDMAHY 44
+L+KK M+KL I L E+E DP+ + +D++ H+
Sbjct: 239 QLMKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDELYHF 279
>gi|110735404 protein tyrosine phosphatase, receptor type, U isoform
1 precursor [Homo sapiens]
Length = 1436
Score = 27.7 bits (60), Expect = 6.3
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2 ERRLIKKEMKKLLGDYIGIRLRENEFDPKGRRQLTFLDDMAHYDLAISVALQWLD--PSE 59
E+ + + +K LL Y + +R +P+GR++ + D+ +A + L P E
Sbjct: 442 EQGVSRYTIKNLL-PYRNVHVRLVLTNPEGRKEGKEVTFQTDEDVPSGIAAESLTFTPLE 500
Query: 60 DLTWLEWEELKIP 72
D+ +L+WEE + P
Sbjct: 501 DMIFLKWEEPQEP 513
>gi|110735406 protein tyrosine phosphatase, receptor type, U isoform
2 precursor [Homo sapiens]
Length = 1442
Score = 27.7 bits (60), Expect = 6.3
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2 ERRLIKKEMKKLLGDYIGIRLRENEFDPKGRRQLTFLDDMAHYDLAISVALQWLD--PSE 59
E+ + + +K LL Y + +R +P+GR++ + D+ +A + L P E
Sbjct: 442 EQGVSRYTIKNLL-PYRNVHVRLVLTNPEGRKEGKEVTFQTDEDVPSGIAAESLTFTPLE 500
Query: 60 DLTWLEWEELKIP 72
D+ +L+WEE + P
Sbjct: 501 DMIFLKWEEPQEP 513
>gi|110735402 protein tyrosine phosphatase, receptor type, U isoform
3 precursor [Homo sapiens]
Length = 1446
Score = 27.7 bits (60), Expect = 6.3
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2 ERRLIKKEMKKLLGDYIGIRLRENEFDPKGRRQLTFLDDMAHYDLAISVALQWLD--PSE 59
E+ + + +K LL Y + +R +P+GR++ + D+ +A + L P E
Sbjct: 442 EQGVSRYTIKNLL-PYRNVHVRLVLTNPEGRKEGKEVTFQTDEDVPSGIAAESLTFTPLE 500
Query: 60 DLTWLEWEELKIP 72
D+ +L+WEE + P
Sbjct: 501 DMIFLKWEEPQEP 513
>gi|224451082 cytospin A [Homo sapiens]
Length = 1117
Score = 27.3 bits (59), Expect = 8.3
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 79 YPNRREREAMILSSYAGILMNSIPIEEVFKIYGADSSADSGTIKVPRVSSL---RLSLHP 135
Y N ER+ L G+ S E + +VP ++ R L P
Sbjct: 810 YMNAVERDLAALRQGMGLSRRSSTSSEPTPTVKTLIKSFDSASQVPNPAAAAIPRTPLSP 869
Query: 136 FAMLTAPKAAAYARKQSVKSRKVTTNKNATSISAKEANATE 176
M T P AA ++ S ++T+K T++S K N E
Sbjct: 870 SPMKTPPAAAVSPMQRHSISGPISTSKPLTALSDKRPNYGE 910
>gi|224451080 cytospin A [Homo sapiens]
Length = 1117
Score = 27.3 bits (59), Expect = 8.3
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 79 YPNRREREAMILSSYAGILMNSIPIEEVFKIYGADSSADSGTIKVPRVSSL---RLSLHP 135
Y N ER+ L G+ S E + +VP ++ R L P
Sbjct: 810 YMNAVERDLAALRQGMGLSRRSSTSSEPTPTVKTLIKSFDSASQVPNPAAAAIPRTPLSP 869
Query: 136 FAMLTAPKAAAYARKQSVKSRKVTTNKNATSISAKEANATE 176
M T P AA ++ S ++T+K T++S K N E
Sbjct: 870 SPMKTPPAAAVSPMQRHSISGPISTSKPLTALSDKRPNYGE 910
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,742,935
Number of Sequences: 37866
Number of extensions: 265155
Number of successful extensions: 649
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 17
length of query: 193
length of database: 18,247,518
effective HSP length: 97
effective length of query: 96
effective length of database: 14,574,516
effective search space: 1399153536
effective search space used: 1399153536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.