Guide to the Human Genome
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Name: C2orf80 Sequence: fasta or formatted (193aa) NCBI GI: 150170696
Description:

hypothetical protein LOC389073

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         17           3
 C cysteine            0.0          0           0
 D aspartate           5.2         10           2
 E glutamate           7.3         14           2
 F phenylalanine       2.6          5           1
 G glycine             3.6          7           1
 H histidine           2.1          4           1
 I isoleucine          6.7         13           1
 K lysine              8.8         17           2
 L leucine             9.8         19           2
 M methionine          3.1          6           1
 N asparagine          3.1          6           1
 P proline             5.2         10           1
 Q glutamine           2.6          5           1
 R arginine            7.8         15           2
 S serine              9.3         18           2
 T threonine           5.2         10           2
 V valine              3.6          7           1
 W tryptophan          2.1          4           1
 Y tyrosine            3.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC389073 
PPP1R3A               0.011   protein phosphatase 1, regulatory (inhibitor) subun...
HMGN1                 0.008   high-mobility group nucleosome binding domain 1 [Hom...
SP9                   0.008   Sp9 transcription factor homolog 
NUP210                0.008   nucleoporin 210 
PIR                   0.008   pirin 
PIR                   0.008   pirin 
PIK3CB                0.008   catalytic phosphatidylinositol 3-kinase beta 
SHPRH                 0.008   SNF2 histone linker PHD RING helicase isoform a [Ho...
SHPRH                 0.008   SNF2 histone linker PHD RING helicase isoform b [Hom...
PTPRU                 0.008   protein tyrosine phosphatase, receptor type, U isof...
PTPRU                 0.008   protein tyrosine phosphatase, receptor type, U isof...
PTPRU                 0.008   protein tyrosine phosphatase, receptor type, U isof...
CYTSA                 0.006   cytospin A 
CYTSA                 0.006   cytospin A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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