Guide to the Human Genome
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Search of human proteins with 149193321

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|149193321 G-rich RNA sequence binding factor 1 isoform 1
[Homo sapiens]
         (480 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Hom...   963   0.0  
gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Hom...   643   0.0  
gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo sap...   266   2e-71
gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo sap...   266   2e-71
gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo sap...   266   2e-71
gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo sap...   266   2e-71
gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo sap...   266   2e-71
gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens]   266   2e-71
gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo sapi...   201   2e-51
gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo sap...   201   2e-51
gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo sapi...   201   2e-51
gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]   136   5e-32
gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]   136   5e-32
gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]   136   5e-32
gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]   136   5e-32
gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]    136   5e-32
gi|45935393 RNA binding motif protein 35B [Homo sapiens]              135   6e-32
gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a...   115   7e-26
gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b...   115   7e-26
gi|19923345 RNA binding motif protein 12 [Homo sapiens]                95   1e-19
gi|23510462 RNA binding motif protein 12 [Homo sapiens]                95   1e-19
gi|118722349 RNA binding motif protein 12B [Homo sapiens]              89   1e-17
gi|226497734 RNA binding motif protein 19 [Homo sapiens]               65   1e-10
gi|226497654 RNA binding motif protein 19 [Homo sapiens]               65   1e-10
gi|226497574 RNA binding motif protein 19 [Homo sapiens]               65   1e-10
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ...    50   3e-06
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ...    50   3e-06
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ...    49   1e-05
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ...    49   1e-05
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s...    47   5e-05

>gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Homo
           sapiens]
          Length = 480

 Score =  963 bits (2490), Expect = 0.0
 Identities = 480/480 (100%), Positives = 480/480 (100%)

Query: 1   MAGTRWVLGALLRGCGCNCSSCRRTGAACLPFYSAAGSIPSGVSGRRRLLLLLGAAAAAA 60
           MAGTRWVLGALLRGCGCNCSSCRRTGAACLPFYSAAGSIPSGVSGRRRLLLLLGAAAAAA
Sbjct: 1   MAGTRWVLGALLRGCGCNCSSCRRTGAACLPFYSAAGSIPSGVSGRRRLLLLLGAAAAAA 60

Query: 61  SQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRASLLPQSLAAAAAVPTRSYSQE 120
           SQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRASLLPQSLAAAAAVPTRSYSQE
Sbjct: 61  SQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRASLLPQSLAAAAAVPTRSYSQE 120

Query: 121 SKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN 180
           SKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN
Sbjct: 121 SKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN 180

Query: 181 GIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQ 240
           GIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQ
Sbjct: 181 GIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQ 240

Query: 241 VKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEP 300
           VKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEP
Sbjct: 241 VKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEP 300

Query: 301 EMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEH 360
           EMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEH
Sbjct: 301 EMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEH 360

Query: 361 EVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINF 420
           EVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINF
Sbjct: 361 EVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINF 420

Query: 421 FAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSCPKGK 480
           FAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSCPKGK
Sbjct: 421 FAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSCPKGK 480


>gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Homo
           sapiens]
          Length = 318

 Score =  643 bits (1659), Expect = 0.0
 Identities = 318/318 (100%), Positives = 318/318 (100%)

Query: 163 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 222
           MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV
Sbjct: 1   MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60

Query: 223 EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 282
           EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM
Sbjct: 61  EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 120

Query: 283 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIA 342
           DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIA
Sbjct: 121 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIA 180

Query: 343 SFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHF 402
           SFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHF
Sbjct: 181 SFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHF 240

Query: 403 VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRS 462
           VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRS
Sbjct: 241 VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRS 300

Query: 463 HVHHRYIELFLNSCPKGK 480
           HVHHRYIELFLNSCPKGK
Sbjct: 301 HVHHRYIELFLNSCPKGK 318



 Score = 89.7 bits (221), Expect = 5e-18
 Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 62/228 (27%)

Query: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR-GDALIEMESEQDVQKA 209
           ++R +GLP+SC  +D+++FF+   I +    I F+++  G+R+ G+A ++ E  +   +A
Sbjct: 89  VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144

Query: 210 LEKHRMYMGQRYVEVYEINNEDVDALM---KSLQVKSSPV---------------VNDGV 251
           L KHR  +G RY+E++     +V   +   K  ++ S P                VN+ +
Sbjct: 145 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 204

Query: 252 ------------------------------------VRLRGLPYSCNEKDIVDFFAGLNI 275
                                               V +RGLP+  N +DI++FFA L  
Sbjct: 205 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKP 264

Query: 276 VDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 322
           V IT  M+Y    K TGEA V FE  E A  A+LK R  + +RYIE+F
Sbjct: 265 VRIT--MEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 25/136 (18%)

Query: 110 AAVPTRSYSQESKTTYLE-----DLPPPPEYEL---------APSKLEEEVD-----DVF 150
           A+ PT  Y  E +  + E     D+ P   +E           P KL E  D      + 
Sbjct: 180 ASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLH 239

Query: 151 LIRAQGLPWSCTMEDVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209
            +  +GLP+    +D++NFF+  + +R     I    +  GK  G+A +  E+ +D   A
Sbjct: 240 FVHMRGLPFQANAQDIINFFAPLKPVR-----ITMEYSSSGKATGEADVHFETHEDAVAA 294

Query: 210 LEKHRMYMGQRYVEVY 225
           + K R ++  RY+E++
Sbjct: 295 MLKDRSHVHHRYIELF 310


>gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo
           sapiens]
          Length = 415

 Score =  266 bits (681), Expect = 2e-71
 Identities = 151/363 (41%), Positives = 215/363 (59%), Gaps = 31/363 (8%)

Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201
           L  E  + F+++ +GLPWSC++EDV NF SDC I +G  G+HF+  R+G++ G+A +E+ 
Sbjct: 3   LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62

Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261
           SE DV+ AL+K R  MG RY+EV++ +  ++D ++K     S+   NDG VRLRGLP+ C
Sbjct: 63  SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319
            +++IV FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 320 EIFPSRRNEVRT-------------------------HVGSYKGKKIASFPTAKYITEPE 354
           E+F S + EVR+                         ++G  K   +       Y T   
Sbjct: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GY 240

Query: 355 MVFEEHEVNEDIQPMTA--FESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQA 412
             +EE+    D    T   F  +    L      +  ++     +++ H VHMRGLP++A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300

Query: 413 NAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
              DI NFF+PL PVR+ +E    G+ TGEADV F THE+AVAAM KDR+++ HRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360

Query: 473 LNS 475
           LNS
Sbjct: 361 LNS 363


>gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo
           sapiens]
          Length = 415

 Score =  266 bits (681), Expect = 2e-71
 Identities = 151/363 (41%), Positives = 215/363 (59%), Gaps = 31/363 (8%)

Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201
           L  E  + F+++ +GLPWSC++EDV NF SDC I +G  G+HF+  R+G++ G+A +E+ 
Sbjct: 3   LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62

Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261
           SE DV+ AL+K R  MG RY+EV++ +  ++D ++K     S+   NDG VRLRGLP+ C
Sbjct: 63  SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319
            +++IV FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 320 EIFPSRRNEVRT-------------------------HVGSYKGKKIASFPTAKYITEPE 354
           E+F S + EVR+                         ++G  K   +       Y T   
Sbjct: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GY 240

Query: 355 MVFEEHEVNEDIQPMTA--FESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQA 412
             +EE+    D    T   F  +    L      +  ++     +++ H VHMRGLP++A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300

Query: 413 NAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
              DI NFF+PL PVR+ +E    G+ TGEADV F THE+AVAAM KDR+++ HRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360

Query: 473 LNS 475
           LNS
Sbjct: 361 LNS 363


>gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo
           sapiens]
          Length = 415

 Score =  266 bits (681), Expect = 2e-71
 Identities = 151/363 (41%), Positives = 215/363 (59%), Gaps = 31/363 (8%)

Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201
           L  E  + F+++ +GLPWSC++EDV NF SDC I +G  G+HF+  R+G++ G+A +E+ 
Sbjct: 3   LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62

Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261
           SE DV+ AL+K R  MG RY+EV++ +  ++D ++K     S+   NDG VRLRGLP+ C
Sbjct: 63  SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319
            +++IV FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 320 EIFPSRRNEVRT-------------------------HVGSYKGKKIASFPTAKYITEPE 354
           E+F S + EVR+                         ++G  K   +       Y T   
Sbjct: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GY 240

Query: 355 MVFEEHEVNEDIQPMTA--FESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQA 412
             +EE+    D    T   F  +    L      +  ++     +++ H VHMRGLP++A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300

Query: 413 NAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
              DI NFF+PL PVR+ +E    G+ TGEADV F THE+AVAAM KDR+++ HRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360

Query: 473 LNS 475
           LNS
Sbjct: 361 LNS 363


>gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo
           sapiens]
          Length = 415

 Score =  266 bits (681), Expect = 2e-71
 Identities = 151/363 (41%), Positives = 215/363 (59%), Gaps = 31/363 (8%)

Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201
           L  E  + F+++ +GLPWSC++EDV NF SDC I +G  G+HF+  R+G++ G+A +E+ 
Sbjct: 3   LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62

Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261
           SE DV+ AL+K R  MG RY+EV++ +  ++D ++K     S+   NDG VRLRGLP+ C
Sbjct: 63  SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319
            +++IV FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 320 EIFPSRRNEVRT-------------------------HVGSYKGKKIASFPTAKYITEPE 354
           E+F S + EVR+                         ++G  K   +       Y T   
Sbjct: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GY 240

Query: 355 MVFEEHEVNEDIQPMTA--FESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQA 412
             +EE+    D    T   F  +    L      +  ++     +++ H VHMRGLP++A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300

Query: 413 NAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
              DI NFF+PL PVR+ +E    G+ TGEADV F THE+AVAAM KDR+++ HRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360

Query: 473 LNS 475
           LNS
Sbjct: 361 LNS 363


>gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo
           sapiens]
          Length = 415

 Score =  266 bits (681), Expect = 2e-71
 Identities = 151/363 (41%), Positives = 215/363 (59%), Gaps = 31/363 (8%)

Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201
           L  E  + F+++ +GLPWSC++EDV NF SDC I +G  G+HF+  R+G++ G+A +E+ 
Sbjct: 3   LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62

Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261
           SE DV+ AL+K R  MG RY+EV++ +  ++D ++K     S+   NDG VRLRGLP+ C
Sbjct: 63  SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319
            +++IV FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 320 EIFPSRRNEVRT-------------------------HVGSYKGKKIASFPTAKYITEPE 354
           E+F S + EVR+                         ++G  K   +       Y T   
Sbjct: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GY 240

Query: 355 MVFEEHEVNEDIQPMTA--FESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQA 412
             +EE+    D    T   F  +    L      +  ++     +++ H VHMRGLP++A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300

Query: 413 NAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
              DI NFF+PL PVR+ +E    G+ TGEADV F THE+AVAAM KDR+++ HRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360

Query: 473 LNS 475
           LNS
Sbjct: 361 LNS 363


>gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
          Length = 415

 Score =  266 bits (681), Expect = 2e-71
 Identities = 151/363 (41%), Positives = 215/363 (59%), Gaps = 31/363 (8%)

Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201
           L  E  + F+++ +GLPWSC++EDV NF SDC I +G  G+HF+  R+G++ G+A +E+ 
Sbjct: 3   LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62

Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261
           SE DV+ AL+K R  MG RY+EV++ +  ++D ++K     S+   NDG VRLRGLP+ C
Sbjct: 63  SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319
            +++IV FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 320 EIFPSRRNEVRT-------------------------HVGSYKGKKIASFPTAKYITEPE 354
           E+F S + EVR+                         ++G  K   +       Y T   
Sbjct: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GY 240

Query: 355 MVFEEHEVNEDIQPMTA--FESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQA 412
             +EE+    D    T   F  +    L      +  ++     +++ H VHMRGLP++A
Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300

Query: 413 NAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
              DI NFF+PL PVR+ +E    G+ TGEADV F THE+AVAAM KDR+++ HRYIELF
Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360

Query: 473 LNS 475
           LNS
Sbjct: 361 LNS 363


>gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo
           sapiens]
          Length = 449

 Score =  201 bits (510), Expect = 2e-51
 Identities = 99/193 (51%), Positives = 138/193 (71%), Gaps = 3/193 (1%)

Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201
           L  E  + F+++ +GLPWSC+ ++V  FFSDC+I+NG  GI F+  R+G+  G+A +E+E
Sbjct: 3   LGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 62

Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261
           SE +V+ AL+K R  MG RYVEV++ NN ++D ++K     S    NDG VRLRGLP+ C
Sbjct: 63  SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319
           ++++IV FF+GL IV   IT  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 SKEEIVQFFSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 320 EIFPSRRNEVRTH 332
           EIF S R EVRTH
Sbjct: 182 EIFKSSRAEVRTH 194



 Score =  107 bits (266), Expect = 3e-23
 Identities = 48/75 (64%), Positives = 59/75 (78%)

Query: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460
           H VHMRGLP++A   DI NFF+PL PVR+ +E    G+ TGEADV F THEDAVAAM KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348

Query: 461 RSHVHHRYIELFLNS 475
           ++++ HRY+ELFLNS
Sbjct: 349 KANMQHRYVELFLNS 363



 Score = 92.8 bits (229), Expect = 6e-19
 Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 61/231 (26%)

Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 306
           VV++RGLP+SC+  ++  FF+   I +    I F+    GR  +GEA+V+ E  +    A
Sbjct: 12  VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGR-PSGEAFVELESEDEVKLA 70

Query: 307 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 366
           L K RE +G+RY+E+F S                           E + V +    N   
Sbjct: 71  LKKDRETMGHRYVEVFKSNN------------------------VEMDWVLKHTGPNS-- 104

Query: 367 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK- 425
                                 P+ A+ G      FV +RGLPF  + ++I+ FF+ L+ 
Sbjct: 105 ----------------------PDTANDG------FVRLRGLPFGCSKEEIVQFFSGLEI 136

Query: 426 -PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 475
            P  IT+     G++TGEA V F + E A  A+ K +  + HRYIE+F +S
Sbjct: 137 VPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187



 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311
           V +RGLPY   E DI +FF+ LN V +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 349

Query: 312 EEIGNRYIEIF 322
             + +RY+E+F
Sbjct: 350 ANMQHRYVELF 360



 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 152 IRAQGLPWSCTMEDVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
           +  +GLP+  T  D+ NFFS    +R     +H  +  DG+  G+A +E  + +D   A+
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345

Query: 211 EKHRMYMGQRYVEVY 225
            K +  M  RYVE++
Sbjct: 346 SKDKANMQHRYVELF 360


>gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo
           sapiens]
          Length = 449

 Score =  201 bits (510), Expect = 2e-51
 Identities = 97/193 (50%), Positives = 141/193 (73%), Gaps = 3/193 (1%)

Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201
           L  E  + F+++ +GLPWSC+ ++V+ FFSDC+I+NG +GI F+  R+G+  G+A +E+E
Sbjct: 3   LSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELE 62

Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261
           SE++V+ AL+K R  MG RYVEV++ N+ ++D ++K     S    NDG VRLRGLP+ C
Sbjct: 63  SEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319
           ++++IV FF+GL IV   +T  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 SKEEIVQFFSGLEIVPNGMTLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 320 EIFPSRRNEVRTH 332
           EIF S R EVRTH
Sbjct: 182 EIFKSSRAEVRTH 194



 Score =  106 bits (264), Expect = 5e-23
 Identities = 47/75 (62%), Positives = 59/75 (78%)

Query: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460
           H VHMRGLP++A   DI NFF+PL P+R+ +E    G+ TGEADV F THEDAVAAM KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348

Query: 461 RSHVHHRYIELFLNS 475
           ++++ HRY+ELFLNS
Sbjct: 349 KANMQHRYVELFLNS 363



 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 61/231 (26%)

Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 306
           VV++RGLP+SC+  +++ FF+   I +    I F+    GR  +GEA+V+ E  E    A
Sbjct: 12  VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGR-PSGEAFVELESEEEVKLA 70

Query: 307 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 366
           L K RE +G+RY+E+F S                           E + V +    N   
Sbjct: 71  LKKDRETMGHRYVEVFKSNS------------------------VEMDWVLKHTGPNS-- 104

Query: 367 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK- 425
                                 P+ A+ G      FV +RGLPF  + ++I+ FF+ L+ 
Sbjct: 105 ----------------------PDTANDG------FVRLRGLPFGCSKEEIVQFFSGLEI 136

Query: 426 -PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 475
            P  +T+     G++TGEA V F + E A  A+ K +  + HRYIE+F +S
Sbjct: 137 VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187



 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311
           V +RGLPY   E DI +FF+ LN + +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDG-RVTGEADVEFATHEDAVAAMAKDK 349

Query: 312 EEIGNRYIEIF 322
             + +RY+E+F
Sbjct: 350 ANMQHRYVELF 360



 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 152 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 211
           +  +GLP+  T  D+ NFFS          +H  +  DG+  G+A +E  + +D   A+ 
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR----VHIEIGPDGRVTGEADVEFATHEDAVAAMA 346

Query: 212 KHRMYMGQRYVEVY 225
           K +  M  RYVE++
Sbjct: 347 KDKANMQHRYVELF 360


>gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo
           sapiens]
          Length = 449

 Score =  201 bits (510), Expect = 2e-51
 Identities = 97/193 (50%), Positives = 141/193 (73%), Gaps = 3/193 (1%)

Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201
           L  E  + F+++ +GLPWSC+ ++V+ FFSDC+I+NG +GI F+  R+G+  G+A +E+E
Sbjct: 3   LSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELE 62

Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261
           SE++V+ AL+K R  MG RYVEV++ N+ ++D ++K     S    NDG VRLRGLP+ C
Sbjct: 63  SEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319
           ++++IV FF+GL IV   +T  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 SKEEIVQFFSGLEIVPNGMTLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 320 EIFPSRRNEVRTH 332
           EIF S R EVRTH
Sbjct: 182 EIFKSSRAEVRTH 194



 Score =  106 bits (264), Expect = 5e-23
 Identities = 47/75 (62%), Positives = 59/75 (78%)

Query: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460
           H VHMRGLP++A   DI NFF+PL P+R+ +E    G+ TGEADV F THEDAVAAM KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348

Query: 461 RSHVHHRYIELFLNS 475
           ++++ HRY+ELFLNS
Sbjct: 349 KANMQHRYVELFLNS 363



 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 61/231 (26%)

Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 306
           VV++RGLP+SC+  +++ FF+   I +    I F+    GR  +GEA+V+ E  E    A
Sbjct: 12  VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGR-PSGEAFVELESEEEVKLA 70

Query: 307 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 366
           L K RE +G+RY+E+F S                           E + V +    N   
Sbjct: 71  LKKDRETMGHRYVEVFKSNS------------------------VEMDWVLKHTGPNS-- 104

Query: 367 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK- 425
                                 P+ A+ G      FV +RGLPF  + ++I+ FF+ L+ 
Sbjct: 105 ----------------------PDTANDG------FVRLRGLPFGCSKEEIVQFFSGLEI 136

Query: 426 -PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 475
            P  +T+     G++TGEA V F + E A  A+ K +  + HRYIE+F +S
Sbjct: 137 VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187



 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311
           V +RGLPY   E DI +FF+ LN + +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDG-RVTGEADVEFATHEDAVAAMAKDK 349

Query: 312 EEIGNRYIEIF 322
             + +RY+E+F
Sbjct: 350 ANMQHRYVELF 360



 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 152 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 211
           +  +GLP+  T  D+ NFFS          +H  +  DG+  G+A +E  + +D   A+ 
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR----VHIEIGPDGRVTGEADVEFATHEDAVAAMA 346

Query: 212 KHRMYMGQRYVEVY 225
           K +  M  RYVE++
Sbjct: 347 KDKANMQHRYVELF 360


>gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]
          Length = 604

 Score =  136 bits (342), Expect = 5e-32
 Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 60/356 (16%)

Query: 134 EYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 193
           ++E       E +DD  ++RA+GLPW  + +D+  FF    I  G  G    LN  G+R 
Sbjct: 209 KFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRN 266

Query: 194 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVV------ 247
           G+AL+   SE+    AL++H+ +MG RY+EVY+   ED    +K     S+ V       
Sbjct: 267 GEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED---FLKIAGGTSNEVAQFLSKE 323

Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIV-----DITFVMDYRGRRKTGEAYVQFEEPEM 302
           N  +VR+RGLP++   +++V FF     +      I FV  Y   R TG+A+V F   E 
Sbjct: 324 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEY 382

Query: 303 ANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEV 362
           A  AL KH++ +G RYIE+F S   EV+  +  +    +   PT   I            
Sbjct: 383 AQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIP----------- 431

Query: 363 NEDIQPMTAFESEKEIELPKE-VPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF 421
                            LP++ VP           T+    + +RGLP+ A  +DI++F 
Sbjct: 432 ----------------VLPQQFVP----------PTNVRDCIRLRGLPYAATIEDILDFL 465

Query: 422 ----APLKPVRITMEYSSSGKATGEADVHFETHEDA-VAAMLKDRSHVHHRYIELF 472
                 ++   + M  +  G+ +G+A +  ++ + A +AA    + ++  RY+E+F
Sbjct: 466 GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVF 521



 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 58/203 (28%), Positives = 107/203 (52%), Gaps = 25/203 (12%)

Query: 151 LIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209
           ++R +GLP++ T E+V+ FF   C I  G+ GI F+   DG+  GDA +    E+  Q A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 210 LEKHRMYMGQRYVEVYEINNEDVDALMKS------LQVKSSPVVN------------DGV 251
           L KH+  +G+RY+E++     +V  ++        + + + P++                
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446

Query: 252 VRLRGLPYSCNEKDIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 307
           +RLRGLPY+   +DI+DF       +    +  V++++GR  +G+A++Q +  + A  A 
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505

Query: 308 LK-HREEIGNRYIEIFPSRRNEV 329
            K H++ + +RY+E+F     E+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSAEEM 528



 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%)

Query: 129 LPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR 188
           LP PP   + P +     +    IR +GLP++ T+ED+L+F  +       +G+H +LN 
Sbjct: 424 LPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNH 483

Query: 189 DGKRRGDALIEMESEQDVQKALEK-HRMYMGQRYVEVYEINNEDVDALM 236
            G+  GDA I+M+S      A +K H+  M  RYVEV++ + E+++ ++
Sbjct: 484 QGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532


>gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]
          Length = 659

 Score =  136 bits (342), Expect = 5e-32
 Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 60/356 (16%)

Query: 134 EYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 193
           ++E       E +DD  ++RA+GLPW  + +D+  FF    I  G  G    LN  G+R 
Sbjct: 209 KFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRN 266

Query: 194 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVV------ 247
           G+AL+   SE+    AL++H+ +MG RY+EVY+   ED    +K     S+ V       
Sbjct: 267 GEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED---FLKIAGGTSNEVAQFLSKE 323

Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIV-----DITFVMDYRGRRKTGEAYVQFEEPEM 302
           N  +VR+RGLP++   +++V FF     +      I FV  Y   R TG+A+V F   E 
Sbjct: 324 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEY 382

Query: 303 ANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEV 362
           A  AL KH++ +G RYIE+F S   EV+  +  +    +   PT   I            
Sbjct: 383 AQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIP----------- 431

Query: 363 NEDIQPMTAFESEKEIELPKE-VPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF 421
                            LP++ VP           T+    + +RGLP+ A  +DI++F 
Sbjct: 432 ----------------VLPQQFVP----------PTNVRDCIRLRGLPYAATIEDILDFL 465

Query: 422 ----APLKPVRITMEYSSSGKATGEADVHFETHEDA-VAAMLKDRSHVHHRYIELF 472
                 ++   + M  +  G+ +G+A +  ++ + A +AA    + ++  RY+E+F
Sbjct: 466 GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVF 521



 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 82/328 (25%), Positives = 144/328 (43%), Gaps = 62/328 (18%)

Query: 151 LIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209
           ++R +GLP++ T E+V+ FF   C I  G+ GI F+   DG+  GDA +    E+  Q A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 210 LEKHRMYMGQRYVEVYEINNEDVDALMKS------LQVKSSPVVN------------DGV 251
           L KH+  +G+RY+E++     +V  ++        + + + P++                
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446

Query: 252 VRLRGLPYSCNEKDIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 307
           +RLRGLPY+   +DI+DF       +    +  V++++GR  +G+A++Q +  + A  A 
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505

Query: 308 LK-HREEIGNRYIEIFPSRRNEVR-THVGSYKGKK------------------IASFPTA 347
            K H++ + +RY+E+F     E+    +G    +                    A  PT 
Sbjct: 506 QKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCLSPPSYTFPAPAAVIPTE 565

Query: 348 KYITEPEMVFEEHEVNEDIQPMTAF---------ESEKEIELPKEVPEKL---PEAADFG 395
             I +P ++         +QP TA+                 P   P  L   P AA+  
Sbjct: 566 AAIYQPSVILNPRA----LQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 621

Query: 396 TTSSL--HFVHMRGLPFQANAQDIINFF 421
                    V M+GL +    ++I+NFF
Sbjct: 622 GVPPQPGTVVRMQGLAYNTGVKEILNFF 649



 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%)

Query: 129 LPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR 188
           LP PP   + P +     +    IR +GLP++ T+ED+L+F  +       +G+H +LN 
Sbjct: 424 LPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNH 483

Query: 189 DGKRRGDALIEMESEQDVQKALEK-HRMYMGQRYVEVYEINNEDVDALM 236
            G+  GDA I+M+S      A +K H+  M  RYVEV++ + E+++ ++
Sbjct: 484 QGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532


>gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]
          Length = 608

 Score =  136 bits (342), Expect = 5e-32
 Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 60/356 (16%)

Query: 134 EYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 193
           ++E       E +DD  ++RA+GLPW  + +D+  FF    I  G  G    LN  G+R 
Sbjct: 209 KFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRN 266

Query: 194 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVV------ 247
           G+AL+   SE+    AL++H+ +MG RY+EVY+   ED    +K     S+ V       
Sbjct: 267 GEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED---FLKIAGGTSNEVAQFLSKE 323

Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIV-----DITFVMDYRGRRKTGEAYVQFEEPEM 302
           N  +VR+RGLP++   +++V FF     +      I FV  Y   R TG+A+V F   E 
Sbjct: 324 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEY 382

Query: 303 ANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEV 362
           A  AL KH++ +G RYIE+F S   EV+  +  +    +   PT   I            
Sbjct: 383 AQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIP----------- 431

Query: 363 NEDIQPMTAFESEKEIELPKE-VPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF 421
                            LP++ VP           T+    + +RGLP+ A  +DI++F 
Sbjct: 432 ----------------VLPQQFVP----------PTNVRDCIRLRGLPYAATIEDILDFL 465

Query: 422 ----APLKPVRITMEYSSSGKATGEADVHFETHEDA-VAAMLKDRSHVHHRYIELF 472
                 ++   + M  +  G+ +G+A +  ++ + A +AA    + ++  RY+E+F
Sbjct: 466 GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVF 521



 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 58/203 (28%), Positives = 107/203 (52%), Gaps = 25/203 (12%)

Query: 151 LIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209
           ++R +GLP++ T E+V+ FF   C I  G+ GI F+   DG+  GDA +    E+  Q A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 210 LEKHRMYMGQRYVEVYEINNEDVDALMKS------LQVKSSPVVN------------DGV 251
           L KH+  +G+RY+E++     +V  ++        + + + P++                
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446

Query: 252 VRLRGLPYSCNEKDIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 307
           +RLRGLPY+   +DI+DF       +    +  V++++GR  +G+A++Q +  + A  A 
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505

Query: 308 LK-HREEIGNRYIEIFPSRRNEV 329
            K H++ + +RY+E+F     E+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSAEEM 528



 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%)

Query: 129 LPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR 188
           LP PP   + P +     +    IR +GLP++ T+ED+L+F  +       +G+H +LN 
Sbjct: 424 LPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNH 483

Query: 189 DGKRRGDALIEMESEQDVQKALEK-HRMYMGQRYVEVYEINNEDVDALM 236
            G+  GDA I+M+S      A +K H+  M  RYVEV++ + E+++ ++
Sbjct: 484 QGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532


>gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]
          Length = 677

 Score =  136 bits (342), Expect = 5e-32
 Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 60/356 (16%)

Query: 134 EYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 193
           ++E       E +DD  ++RA+GLPW  + +D+  FF    I  G  G    LN  G+R 
Sbjct: 209 KFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRN 266

Query: 194 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVV------ 247
           G+AL+   SE+    AL++H+ +MG RY+EVY+   ED    +K     S+ V       
Sbjct: 267 GEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED---FLKIAGGTSNEVAQFLSKE 323

Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIV-----DITFVMDYRGRRKTGEAYVQFEEPEM 302
           N  +VR+RGLP++   +++V FF     +      I FV  Y   R TG+A+V F   E 
Sbjct: 324 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEY 382

Query: 303 ANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEV 362
           A  AL KH++ +G RYIE+F S   EV+  +  +    +   PT   I            
Sbjct: 383 AQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIP----------- 431

Query: 363 NEDIQPMTAFESEKEIELPKE-VPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF 421
                            LP++ VP           T+    + +RGLP+ A  +DI++F 
Sbjct: 432 ----------------VLPQQFVP----------PTNVRDCIRLRGLPYAATIEDILDFL 465

Query: 422 ----APLKPVRITMEYSSSGKATGEADVHFETHEDA-VAAMLKDRSHVHHRYIELF 472
                 ++   + M  +  G+ +G+A +  ++ + A +AA    + ++  RY+E+F
Sbjct: 466 GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVF 521



 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 82/328 (25%), Positives = 144/328 (43%), Gaps = 62/328 (18%)

Query: 151 LIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209
           ++R +GLP++ T E+V+ FF   C I  G+ GI F+   DG+  GDA +    E+  Q A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 210 LEKHRMYMGQRYVEVYEINNEDVDALMKS------LQVKSSPVVN------------DGV 251
           L KH+  +G+RY+E++     +V  ++        + + + P++                
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446

Query: 252 VRLRGLPYSCNEKDIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 307
           +RLRGLPY+   +DI+DF       +    +  V++++GR  +G+A++Q +  + A  A 
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505

Query: 308 LK-HREEIGNRYIEIFPSRRNEVR-THVGSYKGKK------------------IASFPTA 347
            K H++ + +RY+E+F     E+    +G    +                    A  PT 
Sbjct: 506 QKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCLSPPSYTFPAPAAVIPTE 565

Query: 348 KYITEPEMVFEEHEVNEDIQPMTAF---------ESEKEIELPKEVPEKL---PEAADFG 395
             I +P ++         +QP TA+                 P   P  L   P AA+  
Sbjct: 566 AAIYQPSVILNPRA----LQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 621

Query: 396 TTSSL--HFVHMRGLPFQANAQDIINFF 421
                    V M+GL +    ++I+NFF
Sbjct: 622 GVPPQPGTVVRMQGLAYNTGVKEILNFF 649



 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%)

Query: 129 LPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR 188
           LP PP   + P +     +    IR +GLP++ T+ED+L+F  +       +G+H +LN 
Sbjct: 424 LPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNH 483

Query: 189 DGKRRGDALIEMESEQDVQKALEK-HRMYMGQRYVEVYEINNEDVDALM 236
            G+  GDA I+M+S      A +K H+  M  RYVEV++ + E+++ ++
Sbjct: 484 QGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532


>gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]
          Length = 681

 Score =  136 bits (342), Expect = 5e-32
 Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 60/356 (16%)

Query: 134 EYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 193
           ++E       E +DD  ++RA+GLPW  + +D+  FF    I  G  G    LN  G+R 
Sbjct: 209 KFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRN 266

Query: 194 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVV------ 247
           G+AL+   SE+    AL++H+ +MG RY+EVY+   ED    +K     S+ V       
Sbjct: 267 GEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED---FLKIAGGTSNEVAQFLSKE 323

Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIV-----DITFVMDYRGRRKTGEAYVQFEEPEM 302
           N  +VR+RGLP++   +++V FF     +      I FV  Y   R TG+A+V F   E 
Sbjct: 324 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEY 382

Query: 303 ANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEV 362
           A  AL KH++ +G RYIE+F S   EV+  +  +    +   PT   I            
Sbjct: 383 AQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIP----------- 431

Query: 363 NEDIQPMTAFESEKEIELPKE-VPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF 421
                            LP++ VP           T+    + +RGLP+ A  +DI++F 
Sbjct: 432 ----------------VLPQQFVP----------PTNVRDCIRLRGLPYAATIEDILDFL 465

Query: 422 ----APLKPVRITMEYSSSGKATGEADVHFETHEDA-VAAMLKDRSHVHHRYIELF 472
                 ++   + M  +  G+ +G+A +  ++ + A +AA    + ++  RY+E+F
Sbjct: 466 GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVF 521



 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 58/203 (28%), Positives = 107/203 (52%), Gaps = 25/203 (12%)

Query: 151 LIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209
           ++R +GLP++ T E+V+ FF   C I  G+ GI F+   DG+  GDA +    E+  Q A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 210 LEKHRMYMGQRYVEVYEINNEDVDALMKS------LQVKSSPVVN------------DGV 251
           L KH+  +G+RY+E++     +V  ++        + + + P++                
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446

Query: 252 VRLRGLPYSCNEKDIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 307
           +RLRGLPY+   +DI+DF       +    +  V++++GR  +G+A++Q +  + A  A 
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505

Query: 308 LK-HREEIGNRYIEIFPSRRNEV 329
            K H++ + +RY+E+F     E+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSAEEM 528



 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%)

Query: 129 LPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR 188
           LP PP   + P +     +    IR +GLP++ T+ED+L+F  +       +G+H +LN 
Sbjct: 424 LPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNH 483

Query: 189 DGKRRGDALIEMESEQDVQKALEK-HRMYMGQRYVEVYEINNEDVDALM 236
            G+  GDA I+M+S      A +K H+  M  RYVEV++ + E+++ ++
Sbjct: 484 QGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532


>gi|45935393 RNA binding motif protein 35B [Homo sapiens]
          Length = 717

 Score =  135 bits (341), Expect = 6e-32
 Identities = 106/351 (30%), Positives = 161/351 (45%), Gaps = 54/351 (15%)

Query: 134 EYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 193
           +YE  P    + VD   ++RA+GLPW  + +DV  FF    +  G  G+   LN  G+R 
Sbjct: 231 KYETGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRN 288

Query: 194 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALM--KSLQVKSSPVVNDGV 251
           G+ALI     +    AL++H+ +MG RY+EVY+   E+   +    SL+V       D V
Sbjct: 289 GEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIAGGTSLEVARFLSREDQV 348

Query: 252 V-RLRGLPYSCNEKDIVDFFAGLNIVD-----ITFVMDYRGRRKTGEAYVQFEEPEMANQ 305
           + RLRGLP+S    D++ F      V      + FV    GR  TG+A+  F   E+A  
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGR-PTGDAFALFACEELAQA 407

Query: 306 ALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNED 365
           AL +H+  +G RYIE+F S   EV+  +  Y     AS P    +T P +          
Sbjct: 408 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRY-----ASGPLLPTLTAPLL---------- 452

Query: 366 IQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF---- 421
                              P   P A   G       V +RGLP+ A  +DI++F     
Sbjct: 453 -------------------PIPFPLAPGTGRDC----VRLRGLPYTATIEDILSFLGEAA 489

Query: 422 APLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHV-HHRYIEL 471
           A ++P  + M  +  G+ +G+A +   + E A+AA  +    V   RY+E+
Sbjct: 490 ADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEV 540



 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 24/225 (10%)

Query: 147 DDVFLIRAQGLPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQD 205
           +D  ++R +GLP+S    DVL F   +C +  G  G+ F+ + DG+  GDA      E+ 
Sbjct: 345 EDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEEL 404

Query: 206 VQKALEKHRMYMGQRYVEVYEINNEDVDALMKS----------------LQVKSSPVVND 249
            Q AL +H+  +G+RY+E++     +V  ++                  +    +P    
Sbjct: 405 AQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGR 464

Query: 250 GVVRLRGLPYSCNEKDIVDFF----AGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQ 305
             VRLRGLPY+   +DI+ F     A +    +  V++ +G R +G+A++Q    E A  
Sbjct: 465 DCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQG-RPSGDAFIQMTSAERALA 523

Query: 306 ALLK-HREEIGNRYIEIFPSRRNEV-RTHVGSYKGKKIASFPTAK 348
           A  + H++ +  RY+E+ P    E+ R  +G   G+   S P  K
Sbjct: 524 AAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMSPPPCK 568



 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 62/238 (26%), Positives = 101/238 (42%), Gaps = 59/238 (24%)

Query: 242 KSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEE 299
           K+  V ++ VVR RGLP+  +++D+  FF GLN+    +   ++ +GRR  GEA ++F +
Sbjct: 239 KADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRN-GEALIRFVD 297

Query: 300 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 359
            E  + AL +H+  +G RYIE++ +   E     G        S   A++++  + V   
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIAGG------TSLEVARFLSREDQVI-- 349

Query: 360 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 419
                                                      + +RGLPF A   D++ 
Sbjct: 350 -------------------------------------------LRLRGLPFSAGPTDVLG 366

Query: 420 FFAPLKPVR-----ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
           F  P  PV      +       G+ TG+A   F   E A AA+ + +  +  RYIELF
Sbjct: 367 FLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELF 424



 Score = 65.9 bits (159), Expect = 8e-11
 Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 21/204 (10%)

Query: 44  SGRRRLLLLLGAAAAAASQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRA---- 99
           +G   +L  LG        T GL     P GR   P   A +  A    +  ALR     
Sbjct: 359 AGPTDVLGFLGPECPVTGGTEGLLFVRHPDGR---PTGDAFALFACEELAQAALRRHKGM 415

Query: 100 ------SLLPQSLAAAAAVPTRSYSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIR 153
                  L   + A    V  R  S     T    L P P + LAP    +       +R
Sbjct: 416 LGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIP-FPLAPGTGRD------CVR 468

Query: 154 AQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK- 212
            +GLP++ T+ED+L+F  +       +G+H +LN+ G+  GDA I+M S +    A ++ 
Sbjct: 469 LRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRC 528

Query: 213 HRMYMGQRYVEVYEINNEDVDALM 236
           H+  M +RYVEV   + E++  ++
Sbjct: 529 HKKVMKERYVEVVPCSTEEMSRVL 552



 Score = 32.7 bits (73), Expect = 0.75
 Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 25/122 (20%)

Query: 72  PPGRLA--GPPAVATSAAAAA------AASYPALRASLLPQSLAAAAAVPTRSYSQESKT 123
           PP +L    PP   T  A         AA YP+  ++LLP +   AA  P   Y   +  
Sbjct: 565 PPCKLPCLSPPTYTTFQATPTLIPTETAALYPS--SALLPAARVPAAPTPVAYYPGPATQ 622

Query: 124 TYLE-----DLPP----------PPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLN 168
            YL        PP           P   LA +          L+R QG+P++  M+D+L+
Sbjct: 623 LYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLS 682

Query: 169 FF 170
            F
Sbjct: 683 VF 684


>gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a
           [Homo sapiens]
          Length = 346

 Score =  115 bits (289), Expect = 7e-26
 Identities = 52/79 (65%), Positives = 64/79 (81%)

Query: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460
           HFVHMRGLPF+A   DI NFF+PL P+R+ ++  + G+ATGEADV F THEDAVAAM KD
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 254

Query: 461 RSHVHHRYIELFLNSCPKG 479
           ++++ HRYIELFLNS P G
Sbjct: 255 KNNMQHRYIELFLNSTPGG 273



 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 3/85 (3%)

Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQ 305
           +DG VRLRGLP+ C++++IV FF GL IV   IT  MDY+GR  TGEA+VQF   E+A  
Sbjct: 14  SDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGR-STGEAFVQFASKEIAEN 72

Query: 306 ALLKHREEIGNRYIEIFPSRRNEVR 330
           AL KH+E IG+RYIEIF S R+E++
Sbjct: 73  ALGKHKERIGHRYIEIFRSSRSEIK 97



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 152 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 211
           +R +GLP+ C+ E+++ FF    I    NGI   ++  G+  G+A ++  S++  + AL 
Sbjct: 18  VRLRGLPFGCSKEEIVQFFQGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75

Query: 212 KHRMYMGQRYVEVYEINNEDV 232
           KH+  +G RY+E++  +  ++
Sbjct: 76  KHKERIGHRYIEIFRSSRSEI 96



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 403 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460
           V +RGLPF  + ++I+ FF  L+  P  IT+     G++TGEA V F + E A  A+ K 
Sbjct: 18  VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77

Query: 461 RSHVHHRYIELFLNS 475
           +  + HRYIE+F +S
Sbjct: 78  KERIGHRYIEIFRSS 92



 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311
           V +RGLP+   E DI +FF+ LN + +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADG-RATGEADVEFVTHEDAVAAMSKDK 255

Query: 312 EEIGNRYIEIF 322
             + +RYIE+F
Sbjct: 256 NNMQHRYIELF 266



 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 152 IRAQGLPWSCTMEDVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
           +  +GLP+  T  D+ NFFS    IR     +H  +  DG+  G+A +E  + +D   A+
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIR-----VHIDIGADGRATGEADVEFVTHEDAVAAM 251

Query: 211 EKHRMYMGQRYVEVY 225
            K +  M  RY+E++
Sbjct: 252 SKDKNNMQHRYIELF 266


>gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b
           [Homo sapiens]
          Length = 331

 Score =  115 bits (289), Expect = 7e-26
 Identities = 52/79 (65%), Positives = 64/79 (81%)

Query: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460
           HFVHMRGLPF+A   DI NFF+PL P+R+ ++  + G+ATGEADV F THEDAVAAM KD
Sbjct: 180 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 239

Query: 461 RSHVHHRYIELFLNSCPKG 479
           ++++ HRYIELFLNS P G
Sbjct: 240 KNNMQHRYIELFLNSTPGG 258



 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 3/85 (3%)

Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQ 305
           +DG VRLRGLP+ C++++IV FF GL IV   IT  MDY+GR  TGEA+VQF   E+A  
Sbjct: 14  SDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGR-STGEAFVQFASKEIAEN 72

Query: 306 ALLKHREEIGNRYIEIFPSRRNEVR 330
           AL KH+E IG+RYIEIF S R+E++
Sbjct: 73  ALGKHKERIGHRYIEIFRSSRSEIK 97



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 152 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 211
           +R +GLP+ C+ E+++ FF    I    NGI   ++  G+  G+A ++  S++  + AL 
Sbjct: 18  VRLRGLPFGCSKEEIVQFFQGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75

Query: 212 KHRMYMGQRYVEVYEINNEDV 232
           KH+  +G RY+E++  +  ++
Sbjct: 76  KHKERIGHRYIEIFRSSRSEI 96



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 403 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460
           V +RGLPF  + ++I+ FF  L+  P  IT+     G++TGEA V F + E A  A+ K 
Sbjct: 18  VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77

Query: 461 RSHVHHRYIELFLNS 475
           +  + HRYIE+F +S
Sbjct: 78  KERIGHRYIEIFRSS 92



 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 152 IRAQGLPWSCTMEDVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
           +  +GLP+  T  D+ NFFS    IR     +H  +  DG+  G+A +E  + +D   A+
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIR-----VHIDIGADGRATGEADVEFVTHEDAVAAM 236

Query: 211 EKHRMYMGQRYVEVY 225
            K +  M  RY+E++
Sbjct: 237 SKDKNNMQHRYIELF 251


>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
          Length = 932

 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 102/424 (24%), Positives = 170/424 (40%), Gaps = 102/424 (24%)

Query: 70  PVPPGRLAG-----PPAVATSAAAAAAASYPA-LRASLLPQSLAAAAAV-PTRSYSQESK 122
           P+PP  ++G     PP VA   A    +  P  L  +L P  L     V P +  SQ S 
Sbjct: 237 PLPP--MSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSS- 293

Query: 123 TTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGI 182
              ++ LP  P             DD++ +   G+P+S    DV +FF   R+    + +
Sbjct: 294 ---VKPLPINP-------------DDLY-VSVHGMPFSAMENDVRDFFHGLRV----DAV 332

Query: 183 HFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVK 242
           H L +  G+  G+ L++  S QD  +AL+++RM M QRYVEV         A    +  K
Sbjct: 333 HLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFK 392

Query: 243 S------------------------------SPVVNDGVVRLRGLPYSCNEKDIVDFFAG 272
                                          SP      V L+GLP+    K ++DFF  
Sbjct: 393 QNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKK 452

Query: 273 LNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRT 331
           L+IV+ +  + Y    K TGE +V+F        AL +H++ +GNR+I++ P  +  +  
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512

Query: 332 HVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEA 391
            +   + K++ +F    Y     ++  E +VN                            
Sbjct: 513 KIDMIR-KRLQNF---SYDQREMILNPEGDVN---------------------------- 540

Query: 392 ADFGTTSSLHFVHMRGLPFQANAQDIINFF--APLKPVRITMEYSSSGKATGEADVHFET 449
                 S+    H+  +PF     D++ F    P+    + +   ++G+  G+A V F+ 
Sbjct: 541 ------SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKN 594

Query: 450 HEDA 453
            +DA
Sbjct: 595 EDDA 598



 Score = 82.8 bits (203), Expect = 6e-16
 Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 28/234 (11%)

Query: 241 VKSSPVVNDGV-VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEE 299
           VK  P+  D + V + G+P+S  E D+ DFF GL +  +  + D+ GR   G   V+F  
Sbjct: 294 VKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN-GNGLVKFLS 352

Query: 300 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 359
           P+   +AL ++R  +  RY+E+ P+   +     G    K+    P+ +  T P      
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMG-PSGQ--THP------ 403

Query: 360 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 419
                   P       K     K    + P  A F        V+++GLPF+A  + +I+
Sbjct: 404 --------PPQTLPRSKSPSGQKRSRSRSPHEAGF-------CVYLKGLPFEAENKHVID 448

Query: 420 FFAPLKPVR--ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIEL 471
           FF  L  V   I + Y  +GKATGE  V F    D  AA+ + + ++ +R+I++
Sbjct: 449 FFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502



 Score = 73.2 bits (178), Expect = 5e-13
 Identities = 49/186 (26%), Positives = 92/186 (49%), Gaps = 21/186 (11%)

Query: 150 FLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209
           F +  +GLP+    + V++FF    I   E+ I+     +GK  G+  +E  +E D + A
Sbjct: 430 FCVYLKGLPFEAENKHVIDFFKKLDIV--EDSIYIAYGPNGKATGEGFVEFRNEADYKAA 487

Query: 210 LEKHRMYMGQRYVEVYEINN----EDVDALMKSLQ----------VKSSPVVNDGVV--R 253
           L +H+ YMG R+++V+ I      E +D + K LQ          +     VN   V   
Sbjct: 488 LCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCAH 547

Query: 254 LRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311
           +  +P+S  + D++ F  G+ + +  +  ++D  G +  G+A VQF+  + A ++   HR
Sbjct: 548 ITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNG-QGLGQALVQFKNEDDARKSERLHR 606

Query: 312 EEIGNR 317
           +++  R
Sbjct: 607 KKLNGR 612



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 157 LPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMY 216
           +P+S T  DVL F     +   EN +H L++ +G+  G AL++ ++E D +K+   HR  
Sbjct: 551 IPFSITKMDVLQFLEGIPV--DENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKK 608

Query: 217 MGQRYVEVYEINNEDVDALMKS 238
           +  R   V+ +  ED+  + K+
Sbjct: 609 LNGREAFVHVVTLEDMREIEKN 630



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 5/75 (6%)

Query: 403 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFETHEDAVAAM--L 458
           + ++ +PF  +  +I++FF   +  P  + ++Y+  G  TGEA V FE+ ++A AA+  L
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917

Query: 459 KDRSHVHHRYIELFL 473
            DR  +  R ++L L
Sbjct: 918 NDRP-IGSRKVKLVL 931



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGR-RKTGEAYVQFEEPEMANQALLK 309
           V++++ +P++ +  +I+DFF G  ++  +  + Y  +   TGEA V FE  + A  A++ 
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916

Query: 310 HREE-IGNRYIEI 321
             +  IG+R +++
Sbjct: 917 LNDRPIGSRKVKL 929



 Score = 33.9 bits (76), Expect = 0.34
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALL 308
           V+RL+GLP      DI  FF+GL I D  +  V       + GEA++ F   E A   ++
Sbjct: 4   VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV-----GGELGEAFIVFATDEDARLGMM 58

Query: 309 KHREEIGNRYIEIFPSRRNEVRTHV 333
           +    I    + +  S + E++  +
Sbjct: 59  RTGGTIKGSKVTLLLSSKTEMQNMI 83



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 10/77 (12%)

Query: 403 VHMRGLPFQANAQDIINFFAPLK----PVRITMEYSSSGKATGEADVHFETHEDAVAAML 458
           + ++GLP  A   DI +FF+ L      V I       G   GEA + F T EDA   M+
Sbjct: 5   IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV------GGELGEAFIVFATDEDARLGMM 58

Query: 459 KDRSHVHHRYIELFLNS 475
           +    +    + L L+S
Sbjct: 59  RTGGTIKGSKVTLLLSS 75



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQ 207
           +IR QGLP      D+ +FFS   I +G  G+H +    G   G+A I   +++D +
Sbjct: 4   VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDAR 54


>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
          Length = 932

 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 102/424 (24%), Positives = 170/424 (40%), Gaps = 102/424 (24%)

Query: 70  PVPPGRLAG-----PPAVATSAAAAAAASYPA-LRASLLPQSLAAAAAV-PTRSYSQESK 122
           P+PP  ++G     PP VA   A    +  P  L  +L P  L     V P +  SQ S 
Sbjct: 237 PLPP--MSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSS- 293

Query: 123 TTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGI 182
              ++ LP  P             DD++ +   G+P+S    DV +FF   R+    + +
Sbjct: 294 ---VKPLPINP-------------DDLY-VSVHGMPFSAMENDVRDFFHGLRV----DAV 332

Query: 183 HFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVK 242
           H L +  G+  G+ L++  S QD  +AL+++RM M QRYVEV         A    +  K
Sbjct: 333 HLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFK 392

Query: 243 S------------------------------SPVVNDGVVRLRGLPYSCNEKDIVDFFAG 272
                                          SP      V L+GLP+    K ++DFF  
Sbjct: 393 QNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKK 452

Query: 273 LNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRT 331
           L+IV+ +  + Y    K TGE +V+F        AL +H++ +GNR+I++ P  +  +  
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512

Query: 332 HVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEA 391
            +   + K++ +F    Y     ++  E +VN                            
Sbjct: 513 KIDMIR-KRLQNF---SYDQREMILNPEGDVN---------------------------- 540

Query: 392 ADFGTTSSLHFVHMRGLPFQANAQDIINFF--APLKPVRITMEYSSSGKATGEADVHFET 449
                 S+    H+  +PF     D++ F    P+    + +   ++G+  G+A V F+ 
Sbjct: 541 ------SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKN 594

Query: 450 HEDA 453
            +DA
Sbjct: 595 EDDA 598



 Score = 82.8 bits (203), Expect = 6e-16
 Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 28/234 (11%)

Query: 241 VKSSPVVNDGV-VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEE 299
           VK  P+  D + V + G+P+S  E D+ DFF GL +  +  + D+ GR   G   V+F  
Sbjct: 294 VKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN-GNGLVKFLS 352

Query: 300 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 359
           P+   +AL ++R  +  RY+E+ P+   +     G    K+    P+ +  T P      
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMG-PSGQ--THP------ 403

Query: 360 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 419
                   P       K     K    + P  A F        V+++GLPF+A  + +I+
Sbjct: 404 --------PPQTLPRSKSPSGQKRSRSRSPHEAGF-------CVYLKGLPFEAENKHVID 448

Query: 420 FFAPLKPVR--ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIEL 471
           FF  L  V   I + Y  +GKATGE  V F    D  AA+ + + ++ +R+I++
Sbjct: 449 FFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502



 Score = 73.2 bits (178), Expect = 5e-13
 Identities = 49/186 (26%), Positives = 92/186 (49%), Gaps = 21/186 (11%)

Query: 150 FLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209
           F +  +GLP+    + V++FF    I   E+ I+     +GK  G+  +E  +E D + A
Sbjct: 430 FCVYLKGLPFEAENKHVIDFFKKLDIV--EDSIYIAYGPNGKATGEGFVEFRNEADYKAA 487

Query: 210 LEKHRMYMGQRYVEVYEINN----EDVDALMKSLQ----------VKSSPVVNDGVV--R 253
           L +H+ YMG R+++V+ I      E +D + K LQ          +     VN   V   
Sbjct: 488 LCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCAH 547

Query: 254 LRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311
           +  +P+S  + D++ F  G+ + +  +  ++D  G +  G+A VQF+  + A ++   HR
Sbjct: 548 ITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNG-QGLGQALVQFKNEDDARKSERLHR 606

Query: 312 EEIGNR 317
           +++  R
Sbjct: 607 KKLNGR 612



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 157 LPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMY 216
           +P+S T  DVL F     +   EN +H L++ +G+  G AL++ ++E D +K+   HR  
Sbjct: 551 IPFSITKMDVLQFLEGIPV--DENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKK 608

Query: 217 MGQRYVEVYEINNEDVDALMKS 238
           +  R   V+ +  ED+  + K+
Sbjct: 609 LNGREAFVHVVTLEDMREIEKN 630



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 5/75 (6%)

Query: 403 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFETHEDAVAAM--L 458
           + ++ +PF  +  +I++FF   +  P  + ++Y+  G  TGEA V FE+ ++A AA+  L
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917

Query: 459 KDRSHVHHRYIELFL 473
            DR  +  R ++L L
Sbjct: 918 NDRP-IGSRKVKLVL 931



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGR-RKTGEAYVQFEEPEMANQALLK 309
           V++++ +P++ +  +I+DFF G  ++  +  + Y  +   TGEA V FE  + A  A++ 
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916

Query: 310 HREE-IGNRYIEI 321
             +  IG+R +++
Sbjct: 917 LNDRPIGSRKVKL 929



 Score = 33.9 bits (76), Expect = 0.34
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALL 308
           V+RL+GLP      DI  FF+GL I D  +  V       + GEA++ F   E A   ++
Sbjct: 4   VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV-----GGELGEAFIVFATDEDARLGMM 58

Query: 309 KHREEIGNRYIEIFPSRRNEVRTHV 333
           +    I    + +  S + E++  +
Sbjct: 59  RTGGTIKGSKVTLLLSSKTEMQNMI 83



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 10/77 (12%)

Query: 403 VHMRGLPFQANAQDIINFFAPLK----PVRITMEYSSSGKATGEADVHFETHEDAVAAML 458
           + ++GLP  A   DI +FF+ L      V I       G   GEA + F T EDA   M+
Sbjct: 5   IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV------GGELGEAFIVFATDEDARLGMM 58

Query: 459 KDRSHVHHRYIELFLNS 475
           +    +    + L L+S
Sbjct: 59  RTGGTIKGSKVTLLLSS 75



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQ 207
           +IR QGLP      D+ +FFS   I +G  G+H +    G   G+A I   +++D +
Sbjct: 4   VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDAR 54


>gi|118722349 RNA binding motif protein 12B [Homo sapiens]
          Length = 1001

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 80/337 (23%), Positives = 135/337 (40%), Gaps = 74/337 (21%)

Query: 155 QGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHR 214
           +GLP+    +DV  FFS   +    +G+ FL + DG+  GDA+++  S  D    L+ HR
Sbjct: 160 RGLPYLVNEDDVRVFFSGLCV----DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHR 215

Query: 215 MYMGQRYVEVYEINNE-----------DVDALMKSLQVKSSPVVNDG------------- 250
            +MG R++EV + + +           + D L +S +      +ND              
Sbjct: 216 SFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPRR 275

Query: 251 ---------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPE 301
                     V L+ L  S +E+D+ +FF G ++ D      Y+   +T  A+V F+  +
Sbjct: 276 TRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLK 335

Query: 302 MANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHE 361
             N AL  H+  +  R + I P  R ++   +  Y+ K+  S                  
Sbjct: 336 DYNTALSLHKTVLQYRPVHIDPISRKQMLKFIARYEKKRSGSL----------------- 378

Query: 362 VNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF 421
                          E + P  V +K  +    G +     +++R  PF     ++  FF
Sbjct: 379 ---------------ERDRPGHVSQKYSQE---GNSGQKLCIYIRNFPFDVTKVEVQKFF 420

Query: 422 AP--LKPVRITMEYSSSGKATGEADVHFETHEDAVAA 456
           A   L    I + Y   G   GEA V F++ E A+ A
Sbjct: 421 ADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457



 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 80/381 (20%), Positives = 145/381 (38%), Gaps = 89/381 (23%)

Query: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
           +IR  GLP+     D+ +FF+   I +G  G+H +    G   G+A I   +++D ++A+
Sbjct: 4   VIRLLGLPFIAGPVDIRHFFTGLTIPDG--GVHII----GGEIGEAFIIFATDEDARRAI 57

Query: 211 EKHRMYMGQRYVEVY-----------EINNED-------------VDALMKSLQVKSSPV 246
            +   ++    VE++           E+   D             VD+L   ++      
Sbjct: 58  SRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEA 117

Query: 247 VNDGV----------------------------------VRLRGLPYSCNEKDIVDFFAG 272
            N G                                   + LRGLPY  NE D+  FF+G
Sbjct: 118 SNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSG 177

Query: 273 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 332
           L +  + F+  + G R  G+A V+F     A+  L  HR  +G+R+IE+      +    
Sbjct: 178 LCVDGVIFLKHHDG-RNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQ-WIE 235

Query: 333 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 392
            G    K+      ++  + P  + + H           F      + P+    + P   
Sbjct: 236 FGGNAVKEGDVLRRSEEHSPPRGINDRH-----------FRKRSHSKSPRRTRSRSPLG- 283

Query: 393 DFGTTSSLHFVHMRGLPFQANAQDIINFF--APLKPVRITMEYSSSGKATGEADVHFETH 450
                    +VH++ L    + +D+ NFF    L   +I   Y    + T  A V F+T 
Sbjct: 284 --------FYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKTL 334

Query: 451 EDAVAAMLKDRSHVHHRYIEL 471
           +D   A+   ++ + +R + +
Sbjct: 335 KDYNTALSLHKTVLQYRPVHI 355



 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 31/241 (12%)

Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
           V+RL GLP+     DI  FF GL I D   V    G  + GEA++ F   E A +A+ + 
Sbjct: 4   VIRLLGLPFIAGPVDIRHFFTGLTIPD-GGVHIIGG--EIGEAFIIFATDEDARRAISRS 60

Query: 311 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 370
              I +  +E+F S + E++  +   +  ++         +  + +              
Sbjct: 61  GGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSL------------SN 108

Query: 371 AFESEKEIELPKEVPEKLPEAADFGTTSSLH----------------FVHMRGLPFQANA 414
             ES KE          + + A F T  + H                ++ +RGLP+  N 
Sbjct: 109 FIESVKEEASNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNE 168

Query: 415 QDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLN 474
            D+  FF+ L    +       G+  G+A V F +  DA   +   RS +  R+IE+   
Sbjct: 169 DDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQG 228

Query: 475 S 475
           S
Sbjct: 229 S 229



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 403 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFETHEDAVAAM--L 458
           + +  LPF+AN  +I++FF   +  P  ++++Y+  G  TGEA V    + +A+AA+  L
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986

Query: 459 KDR 461
            DR
Sbjct: 987 NDR 989



 Score = 32.7 bits (73), Expect = 0.75
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 152 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 211
           I  +  P+  T  +V  FF+D  +   E+ I+ L +  G   G+AL++ +SE+   KA  
Sbjct: 402 IYIRNFPFDVTKVEVQKFFADFLL--AEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAER 459

Query: 212 KHR 214
            +R
Sbjct: 460 LNR 462



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGR-RKTGEAYV 295
           +++  LP+  N  +I+DFF G  I+  +  + Y  +   TGEA V
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIV 971


>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 24/233 (10%)

Query: 130 PPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD 189
           PP    E      ++E      ++ +G P++ T ++V+ F +  +       I  + N  
Sbjct: 274 PPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAH 329

Query: 190 GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKS------ 243
           G + G   ++  +E++V++AL+ +R YMG RY+EV+   N            KS      
Sbjct: 330 GNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRIL 389

Query: 244 ------SPVVNDGVVRLRGLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRRKTGEAYVQ 296
                   +   G + +R LPY+  E+D+   F+    + ++ + +D   ++  G A++ 
Sbjct: 390 GENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449

Query: 297 FEEPEMANQALLKHREEI-GNRYIEIFPS----RRNEVRTHVG--SYKGKKIA 342
           F  PE A +A  +   ++   R + + PS      +E  + +G  SYK KK A
Sbjct: 450 FMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEA 502



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 30/92 (32%), Positives = 49/92 (53%)

Query: 381 PKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKAT 440
           P E   +  + A+    ++ H V +RG PF    ++++ F APLKPV I +  ++ G  T
Sbjct: 274 PPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKT 333

Query: 441 GEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
           G   V F   E+   A+  +R ++  RYIE+F
Sbjct: 334 GYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 365



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 15/95 (15%)

Query: 382 KEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDI---INFFAPLKPVRITMEYSSSGK 438
           K+VP K        TTS    + +R +PFQA++++I    + F  LK VR+  + + +G 
Sbjct: 823 KQVPRKQ-------TTSK---ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGT 872

Query: 439 ATGEADVHFETHEDAVAAM--LKDRSHVHHRYIEL 471
             G   V F T +DA  A   L   +H++ R + L
Sbjct: 873 HRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVL 907


>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 24/233 (10%)

Query: 130 PPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD 189
           PP    E      ++E      ++ +G P++ T ++V+ F +  +       I  + N  
Sbjct: 274 PPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAH 329

Query: 190 GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKS------ 243
           G + G   ++  +E++V++AL+ +R YMG RY+EV+   N            KS      
Sbjct: 330 GNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRIL 389

Query: 244 ------SPVVNDGVVRLRGLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRRKTGEAYVQ 296
                   +   G + +R LPY+  E+D+   F+    + ++ + +D   ++  G A++ 
Sbjct: 390 GENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449

Query: 297 FEEPEMANQALLKHREEI-GNRYIEIFPS----RRNEVRTHVG--SYKGKKIA 342
           F  PE A +A  +   ++   R + + PS      +E  + +G  SYK KK A
Sbjct: 450 FMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEA 502



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 30/92 (32%), Positives = 49/92 (53%)

Query: 381 PKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKAT 440
           P E   +  + A+    ++ H V +RG PF    ++++ F APLKPV I +  ++ G  T
Sbjct: 274 PPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKT 333

Query: 441 GEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
           G   V F   E+   A+  +R ++  RYIE+F
Sbjct: 334 GYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 365



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 15/95 (15%)

Query: 382 KEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDI---INFFAPLKPVRITMEYSSSGK 438
           K+VP K        TTS    + +R +PFQA++++I    + F  LK VR+  + + +G 
Sbjct: 823 KQVPRKQ-------TTSK---ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGT 872

Query: 439 ATGEADVHFETHEDAVAAM--LKDRSHVHHRYIEL 471
             G   V F T +DA  A   L   +H++ R + L
Sbjct: 873 HRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVL 907


>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 24/233 (10%)

Query: 130 PPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD 189
           PP    E      ++E      ++ +G P++ T ++V+ F +  +       I  + N  
Sbjct: 274 PPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAH 329

Query: 190 GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKS------ 243
           G + G   ++  +E++V++AL+ +R YMG RY+EV+   N            KS      
Sbjct: 330 GNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRIL 389

Query: 244 ------SPVVNDGVVRLRGLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRRKTGEAYVQ 296
                   +   G + +R LPY+  E+D+   F+    + ++ + +D   ++  G A++ 
Sbjct: 390 GENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449

Query: 297 FEEPEMANQALLKHREEI-GNRYIEIFPS----RRNEVRTHVG--SYKGKKIA 342
           F  PE A +A  +   ++   R + + PS      +E  + +G  SYK KK A
Sbjct: 450 FMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEA 502



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 30/92 (32%), Positives = 49/92 (53%)

Query: 381 PKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKAT 440
           P E   +  + A+    ++ H V +RG PF    ++++ F APLKPV I +  ++ G  T
Sbjct: 274 PPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKT 333

Query: 441 GEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
           G   V F   E+   A+  +R ++  RYIE+F
Sbjct: 334 GYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 365



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 15/95 (15%)

Query: 382 KEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDI---INFFAPLKPVRITMEYSSSGK 438
           K+VP K        TTS    + +R +PFQA++++I    + F  LK VR+  + + +G 
Sbjct: 823 KQVPRKQ-------TTSK---ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGT 872

Query: 439 ATGEADVHFETHEDAVAAM--LKDRSHVHHRYIEL 471
             G   V F T +DA  A   L   +H++ R + L
Sbjct: 873 HRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVL 907


>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
           [Homo sapiens]
          Length = 336

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 64/275 (23%), Positives = 106/275 (38%), Gaps = 56/275 (20%)

Query: 54  GAAAAAASQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRASLLPQSLAAAAAVP 113
           GAAAAA +   G        G   G    AT  AAAAA S                A+  
Sbjct: 10  GAAAAATAAVGG------SAGEQEGAMVAATQGAAAAAGSGAGTGGG--------TASGG 55

Query: 114 TRSYSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFS-- 171
           T   S ES+   ++            SK EE+   +F+    GL W  T +D+ ++FS  
Sbjct: 56  TEGGSAESEGAKID-----------ASKNEEDEGKMFI---GGLSWDTTKKDLKDYFSKF 101

Query: 172 ----DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEI 227
               DC ++        L    G+ RG   +  +  + V K +++          + +++
Sbjct: 102 GEVVDCTLK--------LDPITGRSRGFGFVLFKESESVDKVMDQ----------KEHKL 143

Query: 228 NNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD-ITFVMDYRG 286
           N + +D           PV     + + GL     E+ I ++F G   V+ I   MD + 
Sbjct: 144 NGKVIDPKRAKAMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT 200

Query: 287 RRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEI 321
            ++ G  ++ F+E E   + + K    +G    EI
Sbjct: 201 NKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI 235



 Score = 37.0 bits (84), Expect = 0.040
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRRKTGEAYVQFEEPEMANQA 306
           ++G + + GL +   +KD+ D+F+    +VD T  +D    R  G  +V F+E E  ++ 
Sbjct: 76  DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135

Query: 307 LLKHREEIGNRYIEIFPSRRNEVRT 331
           + +   ++  + I+  P R   ++T
Sbjct: 136 MDQKEHKLNGKVID--PKRAKAMKT 158


>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
           [Homo sapiens]
          Length = 287

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 64/275 (23%), Positives = 106/275 (38%), Gaps = 56/275 (20%)

Query: 54  GAAAAAASQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRASLLPQSLAAAAAVP 113
           GAAAAA +   G        G   G    AT  AAAAA S                A+  
Sbjct: 10  GAAAAATAAVGG------SAGEQEGAMVAATQGAAAAAGSGAGTGGG--------TASGG 55

Query: 114 TRSYSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFS-- 171
           T   S ES+   ++            SK EE+   +F+    GL W  T +D+ ++FS  
Sbjct: 56  TEGGSAESEGAKID-----------ASKNEEDEGKMFI---GGLSWDTTKKDLKDYFSKF 101

Query: 172 ----DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEI 227
               DC ++        L    G+ RG   +  +  + V K +++          + +++
Sbjct: 102 GEVVDCTLK--------LDPITGRSRGFGFVLFKESESVDKVMDQ----------KEHKL 143

Query: 228 NNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD-ITFVMDYRG 286
           N + +D           PV     + + GL     E+ I ++F G   V+ I   MD + 
Sbjct: 144 NGKVIDPKRAKAMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT 200

Query: 287 RRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEI 321
            ++ G  ++ F+E E   + + K    +G    EI
Sbjct: 201 NKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI 235



 Score = 37.0 bits (84), Expect = 0.040
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRRKTGEAYVQFEEPEMANQA 306
           ++G + + GL +   +KD+ D+F+    +VD T  +D    R  G  +V F+E E  ++ 
Sbjct: 76  DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135

Query: 307 LLKHREEIGNRYIEIFPSRRNEVRT 331
           + +   ++  + I+  P R   ++T
Sbjct: 136 MDQKEHKLNGKVID--PKRAKAMKT 158


>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
           [Homo sapiens]
          Length = 355

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 63/277 (22%), Positives = 104/277 (37%), Gaps = 41/277 (14%)

Query: 54  GAAAAAASQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRASLLPQSLAAAAAVP 113
           GAAAAA +   G        G   G    AT  AAAAA S                +A  
Sbjct: 10  GAAAAATAAVGG------SAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAES 63

Query: 114 TRSYSQESKTTYLE--DLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFS 171
             +    SK    E      P   E A ++ EE     + +   GL W  T +D+ ++FS
Sbjct: 64  EGAKIDASKNEEDEGHSNSSPRHSEAATAQREE-----WKMFIGGLSWDTTKKDLKDYFS 118

Query: 172 ------DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 225
                 DC ++        L    G+ RG   +  +  + V K +++          + +
Sbjct: 119 KFGEVVDCTLK--------LDPITGRSRGFGFVLFKESESVDKVMDQ----------KEH 160

Query: 226 EINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD-ITFVMDY 284
           ++N + +D           PV     + + GL     E+ I ++F G   V+ I   MD 
Sbjct: 161 KLNGKVIDPKRAKAMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 217

Query: 285 RGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEI 321
           +  ++ G  ++ F+E E   + + K    +G    EI
Sbjct: 218 KTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI 254



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 256 GLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEI 314
           GL +   +KD+ D+F+    +VD T  +D    R  G  +V F+E E  ++ + +   ++
Sbjct: 103 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 162

Query: 315 GNRYIEIFPSRRNEVRT 331
             + I+  P R   ++T
Sbjct: 163 NGKVID--PKRAKAMKT 177


>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
           [Homo sapiens]
          Length = 306

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 63/277 (22%), Positives = 104/277 (37%), Gaps = 41/277 (14%)

Query: 54  GAAAAAASQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRASLLPQSLAAAAAVP 113
           GAAAAA +   G        G   G    AT  AAAAA S                +A  
Sbjct: 10  GAAAAATAAVGG------SAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAES 63

Query: 114 TRSYSQESKTTYLE--DLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFS 171
             +    SK    E      P   E A ++ EE     + +   GL W  T +D+ ++FS
Sbjct: 64  EGAKIDASKNEEDEGHSNSSPRHSEAATAQREE-----WKMFIGGLSWDTTKKDLKDYFS 118

Query: 172 ------DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 225
                 DC ++        L    G+ RG   +  +  + V K +++          + +
Sbjct: 119 KFGEVVDCTLK--------LDPITGRSRGFGFVLFKESESVDKVMDQ----------KEH 160

Query: 226 EINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD-ITFVMDY 284
           ++N + +D           PV     + + GL     E+ I ++F G   V+ I   MD 
Sbjct: 161 KLNGKVIDPKRAKAMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 217

Query: 285 RGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEI 321
           +  ++ G  ++ F+E E   + + K    +G    EI
Sbjct: 218 KTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI 254



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 256 GLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEI 314
           GL +   +KD+ D+F+    +VD T  +D    R  G  +V F+E E  ++ + +   ++
Sbjct: 103 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 162

Query: 315 GNRYIEIFPSRRNEVRT 331
             + I+  P R   ++T
Sbjct: 163 NGKVID--PKRAKAMKT 177


>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
           sapiens]
          Length = 600

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 133 PEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRI-----RNGENGIHFLLN 187
           P+ +L P    +E  D   I  QGL  S T++D+ +FF  C +     R G+  IH  L+
Sbjct: 288 PDLDLGPPVDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD 347

Query: 188 RD-GKRRGDALIEMESEQDVQKALE 211
           ++ GK +GDA +  E     + A+E
Sbjct: 348 KETGKPKGDATVSYEDPPTAKAAVE 372


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,396,423
Number of Sequences: 37866
Number of extensions: 950304
Number of successful extensions: 6992
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 161
Number of HSP's that attempted gapping in prelim test: 5819
Number of HSP's gapped (non-prelim): 880
length of query: 480
length of database: 18,247,518
effective HSP length: 106
effective length of query: 374
effective length of database: 14,233,722
effective search space: 5323412028
effective search space used: 5323412028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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