BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Homo sapiens] (480 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Hom... 963 0.0 gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Hom... 643 0.0 gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo sap... 266 2e-71 gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo sap... 266 2e-71 gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo sap... 266 2e-71 gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo sap... 266 2e-71 gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo sap... 266 2e-71 gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens] 266 2e-71 gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo sapi... 201 2e-51 gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo sap... 201 2e-51 gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo sapi... 201 2e-51 gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens] 136 5e-32 gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens] 136 5e-32 gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens] 136 5e-32 gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens] 136 5e-32 gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens] 136 5e-32 gi|45935393 RNA binding motif protein 35B [Homo sapiens] 135 6e-32 gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a... 115 7e-26 gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b... 115 7e-26 gi|19923345 RNA binding motif protein 12 [Homo sapiens] 95 1e-19 gi|23510462 RNA binding motif protein 12 [Homo sapiens] 95 1e-19 gi|118722349 RNA binding motif protein 12B [Homo sapiens] 89 1e-17 gi|226497734 RNA binding motif protein 19 [Homo sapiens] 65 1e-10 gi|226497654 RNA binding motif protein 19 [Homo sapiens] 65 1e-10 gi|226497574 RNA binding motif protein 19 [Homo sapiens] 65 1e-10 gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 50 3e-06 gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 50 3e-06 gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 49 1e-05 gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 49 1e-05 gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 47 5e-05 >gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Homo sapiens] Length = 480 Score = 963 bits (2490), Expect = 0.0 Identities = 480/480 (100%), Positives = 480/480 (100%) Query: 1 MAGTRWVLGALLRGCGCNCSSCRRTGAACLPFYSAAGSIPSGVSGRRRLLLLLGAAAAAA 60 MAGTRWVLGALLRGCGCNCSSCRRTGAACLPFYSAAGSIPSGVSGRRRLLLLLGAAAAAA Sbjct: 1 MAGTRWVLGALLRGCGCNCSSCRRTGAACLPFYSAAGSIPSGVSGRRRLLLLLGAAAAAA 60 Query: 61 SQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRASLLPQSLAAAAAVPTRSYSQE 120 SQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRASLLPQSLAAAAAVPTRSYSQE Sbjct: 61 SQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRASLLPQSLAAAAAVPTRSYSQE 120 Query: 121 SKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN 180 SKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN Sbjct: 121 SKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN 180 Query: 181 GIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQ 240 GIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQ Sbjct: 181 GIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQ 240 Query: 241 VKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEP 300 VKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEP Sbjct: 241 VKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEP 300 Query: 301 EMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEH 360 EMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEH Sbjct: 301 EMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEH 360 Query: 361 EVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINF 420 EVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINF Sbjct: 361 EVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINF 420 Query: 421 FAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSCPKGK 480 FAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSCPKGK Sbjct: 421 FAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSCPKGK 480 >gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Homo sapiens] Length = 318 Score = 643 bits (1659), Expect = 0.0 Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 163 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 222 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV Sbjct: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60 Query: 223 EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 282 EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM Sbjct: 61 EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 120 Query: 283 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIA 342 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIA Sbjct: 121 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIA 180 Query: 343 SFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHF 402 SFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHF Sbjct: 181 SFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHF 240 Query: 403 VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRS 462 VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRS Sbjct: 241 VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRS 300 Query: 463 HVHHRYIELFLNSCPKGK 480 HVHHRYIELFLNSCPKGK Sbjct: 301 HVHHRYIELFLNSCPKGK 318 Score = 89.7 bits (221), Expect = 5e-18 Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 62/228 (27%) Query: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR-GDALIEMESEQDVQKA 209 ++R +GLP+SC +D+++FF+ I + I F+++ G+R+ G+A ++ E + +A Sbjct: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144 Query: 210 LEKHRMYMGQRYVEVYEINNEDVDALM---KSLQVKSSPV---------------VNDGV 251 L KHR +G RY+E++ +V + K ++ S P VN+ + Sbjct: 145 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 204 Query: 252 ------------------------------------VRLRGLPYSCNEKDIVDFFAGLNI 275 V +RGLP+ N +DI++FFA L Sbjct: 205 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKP 264 Query: 276 VDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 322 V IT M+Y K TGEA V FE E A A+LK R + +RYIE+F Sbjct: 265 VRIT--MEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310 Score = 48.5 bits (114), Expect = 1e-05 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 25/136 (18%) Query: 110 AAVPTRSYSQESKTTYLE-----DLPPPPEYEL---------APSKLEEEVD-----DVF 150 A+ PT Y E + + E D+ P +E P KL E D + Sbjct: 180 ASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLH 239 Query: 151 LIRAQGLPWSCTMEDVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209 + +GLP+ +D++NFF+ + +R I + GK G+A + E+ +D A Sbjct: 240 FVHMRGLPFQANAQDIINFFAPLKPVR-----ITMEYSSSGKATGEADVHFETHEDAVAA 294 Query: 210 LEKHRMYMGQRYVEVY 225 + K R ++ RY+E++ Sbjct: 295 MLKDRSHVHHRYIELF 310 >gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo sapiens] Length = 415 Score = 266 bits (681), Expect = 2e-71 Identities = 151/363 (41%), Positives = 215/363 (59%), Gaps = 31/363 (8%) Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201 L E + F+++ +GLPWSC++EDV NF SDC I +G G+HF+ R+G++ G+A +E+ Sbjct: 3 LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62 Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261 SE DV+ AL+K R MG RY+EV++ + ++D ++K S+ NDG VRLRGLP+ C Sbjct: 63 SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122 Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319 +++IV FF+GL IV IT +D G + TGEA+VQF E+A +AL KH+E IG+RYI Sbjct: 123 TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181 Query: 320 EIFPSRRNEVRT-------------------------HVGSYKGKKIASFPTAKYITEPE 354 E+F S + EVR+ ++G K + Y T Sbjct: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GY 240 Query: 355 MVFEEHEVNEDIQPMTA--FESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQA 412 +EE+ D T F + L + ++ +++ H VHMRGLP++A Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300 Query: 413 NAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472 DI NFF+PL PVR+ +E G+ TGEADV F THE+AVAAM KDR+++ HRYIELF Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360 Query: 473 LNS 475 LNS Sbjct: 361 LNS 363 >gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo sapiens] Length = 415 Score = 266 bits (681), Expect = 2e-71 Identities = 151/363 (41%), Positives = 215/363 (59%), Gaps = 31/363 (8%) Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201 L E + F+++ +GLPWSC++EDV NF SDC I +G G+HF+ R+G++ G+A +E+ Sbjct: 3 LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62 Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261 SE DV+ AL+K R MG RY+EV++ + ++D ++K S+ NDG VRLRGLP+ C Sbjct: 63 SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122 Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319 +++IV FF+GL IV IT +D G + TGEA+VQF E+A +AL KH+E IG+RYI Sbjct: 123 TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181 Query: 320 EIFPSRRNEVRT-------------------------HVGSYKGKKIASFPTAKYITEPE 354 E+F S + EVR+ ++G K + Y T Sbjct: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GY 240 Query: 355 MVFEEHEVNEDIQPMTA--FESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQA 412 +EE+ D T F + L + ++ +++ H VHMRGLP++A Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300 Query: 413 NAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472 DI NFF+PL PVR+ +E G+ TGEADV F THE+AVAAM KDR+++ HRYIELF Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360 Query: 473 LNS 475 LNS Sbjct: 361 LNS 363 >gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo sapiens] Length = 415 Score = 266 bits (681), Expect = 2e-71 Identities = 151/363 (41%), Positives = 215/363 (59%), Gaps = 31/363 (8%) Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201 L E + F+++ +GLPWSC++EDV NF SDC I +G G+HF+ R+G++ G+A +E+ Sbjct: 3 LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62 Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261 SE DV+ AL+K R MG RY+EV++ + ++D ++K S+ NDG VRLRGLP+ C Sbjct: 63 SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122 Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319 +++IV FF+GL IV IT +D G + TGEA+VQF E+A +AL KH+E IG+RYI Sbjct: 123 TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181 Query: 320 EIFPSRRNEVRT-------------------------HVGSYKGKKIASFPTAKYITEPE 354 E+F S + EVR+ ++G K + Y T Sbjct: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GY 240 Query: 355 MVFEEHEVNEDIQPMTA--FESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQA 412 +EE+ D T F + L + ++ +++ H VHMRGLP++A Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300 Query: 413 NAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472 DI NFF+PL PVR+ +E G+ TGEADV F THE+AVAAM KDR+++ HRYIELF Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360 Query: 473 LNS 475 LNS Sbjct: 361 LNS 363 >gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo sapiens] Length = 415 Score = 266 bits (681), Expect = 2e-71 Identities = 151/363 (41%), Positives = 215/363 (59%), Gaps = 31/363 (8%) Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201 L E + F+++ +GLPWSC++EDV NF SDC I +G G+HF+ R+G++ G+A +E+ Sbjct: 3 LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62 Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261 SE DV+ AL+K R MG RY+EV++ + ++D ++K S+ NDG VRLRGLP+ C Sbjct: 63 SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122 Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319 +++IV FF+GL IV IT +D G + TGEA+VQF E+A +AL KH+E IG+RYI Sbjct: 123 TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181 Query: 320 EIFPSRRNEVRT-------------------------HVGSYKGKKIASFPTAKYITEPE 354 E+F S + EVR+ ++G K + Y T Sbjct: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GY 240 Query: 355 MVFEEHEVNEDIQPMTA--FESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQA 412 +EE+ D T F + L + ++ +++ H VHMRGLP++A Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300 Query: 413 NAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472 DI NFF+PL PVR+ +E G+ TGEADV F THE+AVAAM KDR+++ HRYIELF Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360 Query: 473 LNS 475 LNS Sbjct: 361 LNS 363 >gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo sapiens] Length = 415 Score = 266 bits (681), Expect = 2e-71 Identities = 151/363 (41%), Positives = 215/363 (59%), Gaps = 31/363 (8%) Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201 L E + F+++ +GLPWSC++EDV NF SDC I +G G+HF+ R+G++ G+A +E+ Sbjct: 3 LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62 Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261 SE DV+ AL+K R MG RY+EV++ + ++D ++K S+ NDG VRLRGLP+ C Sbjct: 63 SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122 Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319 +++IV FF+GL IV IT +D G + TGEA+VQF E+A +AL KH+E IG+RYI Sbjct: 123 TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181 Query: 320 EIFPSRRNEVRT-------------------------HVGSYKGKKIASFPTAKYITEPE 354 E+F S + EVR+ ++G K + Y T Sbjct: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GY 240 Query: 355 MVFEEHEVNEDIQPMTA--FESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQA 412 +EE+ D T F + L + ++ +++ H VHMRGLP++A Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300 Query: 413 NAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472 DI NFF+PL PVR+ +E G+ TGEADV F THE+AVAAM KDR+++ HRYIELF Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360 Query: 473 LNS 475 LNS Sbjct: 361 LNS 363 >gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens] Length = 415 Score = 266 bits (681), Expect = 2e-71 Identities = 151/363 (41%), Positives = 215/363 (59%), Gaps = 31/363 (8%) Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201 L E + F+++ +GLPWSC++EDV NF SDC I +G G+HF+ R+G++ G+A +E+ Sbjct: 3 LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62 Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261 SE DV+ AL+K R MG RY+EV++ + ++D ++K S+ NDG VRLRGLP+ C Sbjct: 63 SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122 Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319 +++IV FF+GL IV IT +D G + TGEA+VQF E+A +AL KH+E IG+RYI Sbjct: 123 TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181 Query: 320 EIFPSRRNEVRT-------------------------HVGSYKGKKIASFPTAKYITEPE 354 E+F S + EVR+ ++G K + Y T Sbjct: 182 EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GY 240 Query: 355 MVFEEHEVNEDIQPMTA--FESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQA 412 +EE+ D T F + L + ++ +++ H VHMRGLP++A Sbjct: 241 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA 300 Query: 413 NAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472 DI NFF+PL PVR+ +E G+ TGEADV F THE+AVAAM KDR+++ HRYIELF Sbjct: 301 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360 Query: 473 LNS 475 LNS Sbjct: 361 LNS 363 >gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo sapiens] Length = 449 Score = 201 bits (510), Expect = 2e-51 Identities = 99/193 (51%), Positives = 138/193 (71%), Gaps = 3/193 (1%) Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201 L E + F+++ +GLPWSC+ ++V FFSDC+I+NG GI F+ R+G+ G+A +E+E Sbjct: 3 LGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 62 Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261 SE +V+ AL+K R MG RYVEV++ NN ++D ++K S NDG VRLRGLP+ C Sbjct: 63 SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122 Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319 ++++IV FF+GL IV IT +D++G R TGEA+VQF E+A +AL KH+E IG+RYI Sbjct: 123 SKEEIVQFFSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181 Query: 320 EIFPSRRNEVRTH 332 EIF S R EVRTH Sbjct: 182 EIFKSSRAEVRTH 194 Score = 107 bits (266), Expect = 3e-23 Identities = 48/75 (64%), Positives = 59/75 (78%) Query: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460 H VHMRGLP++A DI NFF+PL PVR+ +E G+ TGEADV F THEDAVAAM KD Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348 Query: 461 RSHVHHRYIELFLNS 475 ++++ HRY+ELFLNS Sbjct: 349 KANMQHRYVELFLNS 363 Score = 92.8 bits (229), Expect = 6e-19 Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 61/231 (26%) Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 306 VV++RGLP+SC+ ++ FF+ I + I F+ GR +GEA+V+ E + A Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGR-PSGEAFVELESEDEVKLA 70 Query: 307 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 366 L K RE +G+RY+E+F S E + V + N Sbjct: 71 LKKDRETMGHRYVEVFKSNN------------------------VEMDWVLKHTGPNS-- 104 Query: 367 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK- 425 P+ A+ G FV +RGLPF + ++I+ FF+ L+ Sbjct: 105 ----------------------PDTANDG------FVRLRGLPFGCSKEEIVQFFSGLEI 136 Query: 426 -PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 475 P IT+ G++TGEA V F + E A A+ K + + HRYIE+F +S Sbjct: 137 VPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187 Score = 52.4 bits (124), Expect = 9e-07 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311 V +RGLPY E DI +FF+ LN V + + G R TGEA V+F E A A+ K + Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 349 Query: 312 EEIGNRYIEIF 322 + +RY+E+F Sbjct: 350 ANMQHRYVELF 360 Score = 46.2 bits (108), Expect = 7e-05 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%) Query: 152 IRAQGLPWSCTMEDVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210 + +GLP+ T D+ NFFS +R +H + DG+ G+A +E + +D A+ Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345 Query: 211 EKHRMYMGQRYVEVY 225 K + M RYVE++ Sbjct: 346 SKDKANMQHRYVELF 360 >gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens] Length = 449 Score = 201 bits (510), Expect = 2e-51 Identities = 97/193 (50%), Positives = 141/193 (73%), Gaps = 3/193 (1%) Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201 L E + F+++ +GLPWSC+ ++V+ FFSDC+I+NG +GI F+ R+G+ G+A +E+E Sbjct: 3 LSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELE 62 Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261 SE++V+ AL+K R MG RYVEV++ N+ ++D ++K S NDG VRLRGLP+ C Sbjct: 63 SEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122 Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319 ++++IV FF+GL IV +T +D++G R TGEA+VQF E+A +AL KH+E IG+RYI Sbjct: 123 SKEEIVQFFSGLEIVPNGMTLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181 Query: 320 EIFPSRRNEVRTH 332 EIF S R EVRTH Sbjct: 182 EIFKSSRAEVRTH 194 Score = 106 bits (264), Expect = 5e-23 Identities = 47/75 (62%), Positives = 59/75 (78%) Query: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460 H VHMRGLP++A DI NFF+PL P+R+ +E G+ TGEADV F THEDAVAAM KD Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348 Query: 461 RSHVHHRYIELFLNS 475 ++++ HRY+ELFLNS Sbjct: 349 KANMQHRYVELFLNS 363 Score = 93.6 bits (231), Expect = 4e-19 Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 61/231 (26%) Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 306 VV++RGLP+SC+ +++ FF+ I + I F+ GR +GEA+V+ E E A Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGR-PSGEAFVELESEEEVKLA 70 Query: 307 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 366 L K RE +G+RY+E+F S E + V + N Sbjct: 71 LKKDRETMGHRYVEVFKSNS------------------------VEMDWVLKHTGPNS-- 104 Query: 367 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK- 425 P+ A+ G FV +RGLPF + ++I+ FF+ L+ Sbjct: 105 ----------------------PDTANDG------FVRLRGLPFGCSKEEIVQFFSGLEI 136 Query: 426 -PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 475 P +T+ G++TGEA V F + E A A+ K + + HRYIE+F +S Sbjct: 137 VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187 Score = 51.6 bits (122), Expect = 2e-06 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311 V +RGLPY E DI +FF+ LN + + + G R TGEA V+F E A A+ K + Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDG-RVTGEADVEFATHEDAVAAMAKDK 349 Query: 312 EEIGNRYIEIF 322 + +RY+E+F Sbjct: 350 ANMQHRYVELF 360 Score = 46.2 bits (108), Expect = 7e-05 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 152 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 211 + +GLP+ T D+ NFFS +H + DG+ G+A +E + +D A+ Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR----VHIEIGPDGRVTGEADVEFATHEDAVAAMA 346 Query: 212 KHRMYMGQRYVEVY 225 K + M RYVE++ Sbjct: 347 KDKANMQHRYVELF 360 >gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens] Length = 449 Score = 201 bits (510), Expect = 2e-51 Identities = 97/193 (50%), Positives = 141/193 (73%), Gaps = 3/193 (1%) Query: 142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 201 L E + F+++ +GLPWSC+ ++V+ FFSDC+I+NG +GI F+ R+G+ G+A +E+E Sbjct: 3 LSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELE 62 Query: 202 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSC 261 SE++V+ AL+K R MG RYVEV++ N+ ++D ++K S NDG VRLRGLP+ C Sbjct: 63 SEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122 Query: 262 NEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 319 ++++IV FF+GL IV +T +D++G R TGEA+VQF E+A +AL KH+E IG+RYI Sbjct: 123 SKEEIVQFFSGLEIVPNGMTLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181 Query: 320 EIFPSRRNEVRTH 332 EIF S R EVRTH Sbjct: 182 EIFKSSRAEVRTH 194 Score = 106 bits (264), Expect = 5e-23 Identities = 47/75 (62%), Positives = 59/75 (78%) Query: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460 H VHMRGLP++A DI NFF+PL P+R+ +E G+ TGEADV F THEDAVAAM KD Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348 Query: 461 RSHVHHRYIELFLNS 475 ++++ HRY+ELFLNS Sbjct: 349 KANMQHRYVELFLNS 363 Score = 93.6 bits (231), Expect = 4e-19 Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 61/231 (26%) Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 306 VV++RGLP+SC+ +++ FF+ I + I F+ GR +GEA+V+ E E A Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGR-PSGEAFVELESEEEVKLA 70 Query: 307 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 366 L K RE +G+RY+E+F S E + V + N Sbjct: 71 LKKDRETMGHRYVEVFKSNS------------------------VEMDWVLKHTGPNS-- 104 Query: 367 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK- 425 P+ A+ G FV +RGLPF + ++I+ FF+ L+ Sbjct: 105 ----------------------PDTANDG------FVRLRGLPFGCSKEEIVQFFSGLEI 136 Query: 426 -PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 475 P +T+ G++TGEA V F + E A A+ K + + HRYIE+F +S Sbjct: 137 VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187 Score = 51.6 bits (122), Expect = 2e-06 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311 V +RGLPY E DI +FF+ LN + + + G R TGEA V+F E A A+ K + Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDG-RVTGEADVEFATHEDAVAAMAKDK 349 Query: 312 EEIGNRYIEIF 322 + +RY+E+F Sbjct: 350 ANMQHRYVELF 360 Score = 46.2 bits (108), Expect = 7e-05 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 152 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 211 + +GLP+ T D+ NFFS +H + DG+ G+A +E + +D A+ Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR----VHIEIGPDGRVTGEADVEFATHEDAVAAMA 346 Query: 212 KHRMYMGQRYVEVY 225 K + M RYVE++ Sbjct: 347 KDKANMQHRYVELF 360 >gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens] Length = 604 Score = 136 bits (342), Expect = 5e-32 Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 60/356 (16%) Query: 134 EYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 193 ++E E +DD ++RA+GLPW + +D+ FF I G G LN G+R Sbjct: 209 KFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRN 266 Query: 194 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVV------ 247 G+AL+ SE+ AL++H+ +MG RY+EVY+ ED +K S+ V Sbjct: 267 GEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED---FLKIAGGTSNEVAQFLSKE 323 Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIV-----DITFVMDYRGRRKTGEAYVQFEEPEM 302 N +VR+RGLP++ +++V FF + I FV Y R TG+A+V F E Sbjct: 324 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEY 382 Query: 303 ANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEV 362 A AL KH++ +G RYIE+F S EV+ + + + PT I Sbjct: 383 AQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIP----------- 431 Query: 363 NEDIQPMTAFESEKEIELPKE-VPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF 421 LP++ VP T+ + +RGLP+ A +DI++F Sbjct: 432 ----------------VLPQQFVP----------PTNVRDCIRLRGLPYAATIEDILDFL 465 Query: 422 ----APLKPVRITMEYSSSGKATGEADVHFETHEDA-VAAMLKDRSHVHHRYIELF 472 ++ + M + G+ +G+A + ++ + A +AA + ++ RY+E+F Sbjct: 466 GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVF 521 Score = 97.1 bits (240), Expect = 3e-20 Identities = 58/203 (28%), Positives = 107/203 (52%), Gaps = 25/203 (12%) Query: 151 LIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209 ++R +GLP++ T E+V+ FF C I G+ GI F+ DG+ GDA + E+ Q A Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386 Query: 210 LEKHRMYMGQRYVEVYEINNEDVDALMKS------LQVKSSPVVN------------DGV 251 L KH+ +G+RY+E++ +V ++ + + + P++ Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446 Query: 252 VRLRGLPYSCNEKDIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 307 +RLRGLPY+ +DI+DF + + V++++GR +G+A++Q + + A A Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505 Query: 308 LK-HREEIGNRYIEIFPSRRNEV 329 K H++ + +RY+E+F E+ Sbjct: 506 QKCHKKNMKDRYVEVFQCSAEEM 528 Score = 69.7 bits (169), Expect = 6e-12 Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%) Query: 129 LPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR 188 LP PP + P + + IR +GLP++ T+ED+L+F + +G+H +LN Sbjct: 424 LPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNH 483 Query: 189 DGKRRGDALIEMESEQDVQKALEK-HRMYMGQRYVEVYEINNEDVDALM 236 G+ GDA I+M+S A +K H+ M RYVEV++ + E+++ ++ Sbjct: 484 QGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532 >gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens] Length = 659 Score = 136 bits (342), Expect = 5e-32 Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 60/356 (16%) Query: 134 EYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 193 ++E E +DD ++RA+GLPW + +D+ FF I G G LN G+R Sbjct: 209 KFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRN 266 Query: 194 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVV------ 247 G+AL+ SE+ AL++H+ +MG RY+EVY+ ED +K S+ V Sbjct: 267 GEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED---FLKIAGGTSNEVAQFLSKE 323 Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIV-----DITFVMDYRGRRKTGEAYVQFEEPEM 302 N +VR+RGLP++ +++V FF + I FV Y R TG+A+V F E Sbjct: 324 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEY 382 Query: 303 ANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEV 362 A AL KH++ +G RYIE+F S EV+ + + + PT I Sbjct: 383 AQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIP----------- 431 Query: 363 NEDIQPMTAFESEKEIELPKE-VPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF 421 LP++ VP T+ + +RGLP+ A +DI++F Sbjct: 432 ----------------VLPQQFVP----------PTNVRDCIRLRGLPYAATIEDILDFL 465 Query: 422 ----APLKPVRITMEYSSSGKATGEADVHFETHEDA-VAAMLKDRSHVHHRYIELF 472 ++ + M + G+ +G+A + ++ + A +AA + ++ RY+E+F Sbjct: 466 GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVF 521 Score = 98.6 bits (244), Expect = 1e-20 Identities = 82/328 (25%), Positives = 144/328 (43%), Gaps = 62/328 (18%) Query: 151 LIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209 ++R +GLP++ T E+V+ FF C I G+ GI F+ DG+ GDA + E+ Q A Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386 Query: 210 LEKHRMYMGQRYVEVYEINNEDVDALMKS------LQVKSSPVVN------------DGV 251 L KH+ +G+RY+E++ +V ++ + + + P++ Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446 Query: 252 VRLRGLPYSCNEKDIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 307 +RLRGLPY+ +DI+DF + + V++++GR +G+A++Q + + A A Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505 Query: 308 LK-HREEIGNRYIEIFPSRRNEVR-THVGSYKGKK------------------IASFPTA 347 K H++ + +RY+E+F E+ +G + A PT Sbjct: 506 QKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCLSPPSYTFPAPAAVIPTE 565 Query: 348 KYITEPEMVFEEHEVNEDIQPMTAF---------ESEKEIELPKEVPEKL---PEAADFG 395 I +P ++ +QP TA+ P P L P AA+ Sbjct: 566 AAIYQPSVILNPRA----LQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 621 Query: 396 TTSSL--HFVHMRGLPFQANAQDIINFF 421 V M+GL + ++I+NFF Sbjct: 622 GVPPQPGTVVRMQGLAYNTGVKEILNFF 649 Score = 69.7 bits (169), Expect = 6e-12 Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%) Query: 129 LPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR 188 LP PP + P + + IR +GLP++ T+ED+L+F + +G+H +LN Sbjct: 424 LPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNH 483 Query: 189 DGKRRGDALIEMESEQDVQKALEK-HRMYMGQRYVEVYEINNEDVDALM 236 G+ GDA I+M+S A +K H+ M RYVEV++ + E+++ ++ Sbjct: 484 QGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532 >gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens] Length = 608 Score = 136 bits (342), Expect = 5e-32 Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 60/356 (16%) Query: 134 EYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 193 ++E E +DD ++RA+GLPW + +D+ FF I G G LN G+R Sbjct: 209 KFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRN 266 Query: 194 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVV------ 247 G+AL+ SE+ AL++H+ +MG RY+EVY+ ED +K S+ V Sbjct: 267 GEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED---FLKIAGGTSNEVAQFLSKE 323 Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIV-----DITFVMDYRGRRKTGEAYVQFEEPEM 302 N +VR+RGLP++ +++V FF + I FV Y R TG+A+V F E Sbjct: 324 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEY 382 Query: 303 ANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEV 362 A AL KH++ +G RYIE+F S EV+ + + + PT I Sbjct: 383 AQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIP----------- 431 Query: 363 NEDIQPMTAFESEKEIELPKE-VPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF 421 LP++ VP T+ + +RGLP+ A +DI++F Sbjct: 432 ----------------VLPQQFVP----------PTNVRDCIRLRGLPYAATIEDILDFL 465 Query: 422 ----APLKPVRITMEYSSSGKATGEADVHFETHEDA-VAAMLKDRSHVHHRYIELF 472 ++ + M + G+ +G+A + ++ + A +AA + ++ RY+E+F Sbjct: 466 GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVF 521 Score = 97.1 bits (240), Expect = 3e-20 Identities = 58/203 (28%), Positives = 107/203 (52%), Gaps = 25/203 (12%) Query: 151 LIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209 ++R +GLP++ T E+V+ FF C I G+ GI F+ DG+ GDA + E+ Q A Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386 Query: 210 LEKHRMYMGQRYVEVYEINNEDVDALMKS------LQVKSSPVVN------------DGV 251 L KH+ +G+RY+E++ +V ++ + + + P++ Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446 Query: 252 VRLRGLPYSCNEKDIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 307 +RLRGLPY+ +DI+DF + + V++++GR +G+A++Q + + A A Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505 Query: 308 LK-HREEIGNRYIEIFPSRRNEV 329 K H++ + +RY+E+F E+ Sbjct: 506 QKCHKKNMKDRYVEVFQCSAEEM 528 Score = 69.7 bits (169), Expect = 6e-12 Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%) Query: 129 LPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR 188 LP PP + P + + IR +GLP++ T+ED+L+F + +G+H +LN Sbjct: 424 LPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNH 483 Query: 189 DGKRRGDALIEMESEQDVQKALEK-HRMYMGQRYVEVYEINNEDVDALM 236 G+ GDA I+M+S A +K H+ M RYVEV++ + E+++ ++ Sbjct: 484 QGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532 >gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens] Length = 677 Score = 136 bits (342), Expect = 5e-32 Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 60/356 (16%) Query: 134 EYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 193 ++E E +DD ++RA+GLPW + +D+ FF I G G LN G+R Sbjct: 209 KFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRN 266 Query: 194 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVV------ 247 G+AL+ SE+ AL++H+ +MG RY+EVY+ ED +K S+ V Sbjct: 267 GEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED---FLKIAGGTSNEVAQFLSKE 323 Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIV-----DITFVMDYRGRRKTGEAYVQFEEPEM 302 N +VR+RGLP++ +++V FF + I FV Y R TG+A+V F E Sbjct: 324 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEY 382 Query: 303 ANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEV 362 A AL KH++ +G RYIE+F S EV+ + + + PT I Sbjct: 383 AQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIP----------- 431 Query: 363 NEDIQPMTAFESEKEIELPKE-VPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF 421 LP++ VP T+ + +RGLP+ A +DI++F Sbjct: 432 ----------------VLPQQFVP----------PTNVRDCIRLRGLPYAATIEDILDFL 465 Query: 422 ----APLKPVRITMEYSSSGKATGEADVHFETHEDA-VAAMLKDRSHVHHRYIELF 472 ++ + M + G+ +G+A + ++ + A +AA + ++ RY+E+F Sbjct: 466 GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVF 521 Score = 98.6 bits (244), Expect = 1e-20 Identities = 82/328 (25%), Positives = 144/328 (43%), Gaps = 62/328 (18%) Query: 151 LIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209 ++R +GLP++ T E+V+ FF C I G+ GI F+ DG+ GDA + E+ Q A Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386 Query: 210 LEKHRMYMGQRYVEVYEINNEDVDALMKS------LQVKSSPVVN------------DGV 251 L KH+ +G+RY+E++ +V ++ + + + P++ Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446 Query: 252 VRLRGLPYSCNEKDIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 307 +RLRGLPY+ +DI+DF + + V++++GR +G+A++Q + + A A Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505 Query: 308 LK-HREEIGNRYIEIFPSRRNEVR-THVGSYKGKK------------------IASFPTA 347 K H++ + +RY+E+F E+ +G + A PT Sbjct: 506 QKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCLSPPSYTFPAPAAVIPTE 565 Query: 348 KYITEPEMVFEEHEVNEDIQPMTAF---------ESEKEIELPKEVPEKL---PEAADFG 395 I +P ++ +QP TA+ P P L P AA+ Sbjct: 566 AAIYQPSVILNPRA----LQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 621 Query: 396 TTSSL--HFVHMRGLPFQANAQDIINFF 421 V M+GL + ++I+NFF Sbjct: 622 GVPPQPGTVVRMQGLAYNTGVKEILNFF 649 Score = 69.7 bits (169), Expect = 6e-12 Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%) Query: 129 LPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR 188 LP PP + P + + IR +GLP++ T+ED+L+F + +G+H +LN Sbjct: 424 LPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNH 483 Query: 189 DGKRRGDALIEMESEQDVQKALEK-HRMYMGQRYVEVYEINNEDVDALM 236 G+ GDA I+M+S A +K H+ M RYVEV++ + E+++ ++ Sbjct: 484 QGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532 >gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens] Length = 681 Score = 136 bits (342), Expect = 5e-32 Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 60/356 (16%) Query: 134 EYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 193 ++E E +DD ++RA+GLPW + +D+ FF I G G LN G+R Sbjct: 209 KFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRN 266 Query: 194 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVV------ 247 G+AL+ SE+ AL++H+ +MG RY+EVY+ ED +K S+ V Sbjct: 267 GEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED---FLKIAGGTSNEVAQFLSKE 323 Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIV-----DITFVMDYRGRRKTGEAYVQFEEPEM 302 N +VR+RGLP++ +++V FF + I FV Y R TG+A+V F E Sbjct: 324 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEY 382 Query: 303 ANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEV 362 A AL KH++ +G RYIE+F S EV+ + + + PT I Sbjct: 383 AQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIP----------- 431 Query: 363 NEDIQPMTAFESEKEIELPKE-VPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF 421 LP++ VP T+ + +RGLP+ A +DI++F Sbjct: 432 ----------------VLPQQFVP----------PTNVRDCIRLRGLPYAATIEDILDFL 465 Query: 422 ----APLKPVRITMEYSSSGKATGEADVHFETHEDA-VAAMLKDRSHVHHRYIELF 472 ++ + M + G+ +G+A + ++ + A +AA + ++ RY+E+F Sbjct: 466 GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVF 521 Score = 97.1 bits (240), Expect = 3e-20 Identities = 58/203 (28%), Positives = 107/203 (52%), Gaps = 25/203 (12%) Query: 151 LIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209 ++R +GLP++ T E+V+ FF C I G+ GI F+ DG+ GDA + E+ Q A Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386 Query: 210 LEKHRMYMGQRYVEVYEINNEDVDALMKS------LQVKSSPVVN------------DGV 251 L KH+ +G+RY+E++ +V ++ + + + P++ Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446 Query: 252 VRLRGLPYSCNEKDIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 307 +RLRGLPY+ +DI+DF + + V++++GR +G+A++Q + + A A Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505 Query: 308 LK-HREEIGNRYIEIFPSRRNEV 329 K H++ + +RY+E+F E+ Sbjct: 506 QKCHKKNMKDRYVEVFQCSAEEM 528 Score = 69.7 bits (169), Expect = 6e-12 Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%) Query: 129 LPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR 188 LP PP + P + + IR +GLP++ T+ED+L+F + +G+H +LN Sbjct: 424 LPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNH 483 Query: 189 DGKRRGDALIEMESEQDVQKALEK-HRMYMGQRYVEVYEINNEDVDALM 236 G+ GDA I+M+S A +K H+ M RYVEV++ + E+++ ++ Sbjct: 484 QGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532 >gi|45935393 RNA binding motif protein 35B [Homo sapiens] Length = 717 Score = 135 bits (341), Expect = 6e-32 Identities = 106/351 (30%), Positives = 161/351 (45%), Gaps = 54/351 (15%) Query: 134 EYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 193 +YE P + VD ++RA+GLPW + +DV FF + G G+ LN G+R Sbjct: 231 KYETGPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARG--GVALCLNAQGRRN 288 Query: 194 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALM--KSLQVKSSPVVNDGV 251 G+ALI + AL++H+ +MG RY+EVY+ E+ + SL+V D V Sbjct: 289 GEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIAGGTSLEVARFLSREDQV 348 Query: 252 V-RLRGLPYSCNEKDIVDFFAGLNIVD-----ITFVMDYRGRRKTGEAYVQFEEPEMANQ 305 + RLRGLP+S D++ F V + FV GR TG+A+ F E+A Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGR-PTGDAFALFACEELAQA 407 Query: 306 ALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNED 365 AL +H+ +G RYIE+F S EV+ + Y AS P +T P + Sbjct: 408 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRY-----ASGPLLPTLTAPLL---------- 452 Query: 366 IQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF---- 421 P P A G V +RGLP+ A +DI++F Sbjct: 453 -------------------PIPFPLAPGTGRDC----VRLRGLPYTATIEDILSFLGEAA 489 Query: 422 APLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHV-HHRYIEL 471 A ++P + M + G+ +G+A + + E A+AA + V RY+E+ Sbjct: 490 ADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEV 540 Score = 91.3 bits (225), Expect = 2e-18 Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 24/225 (10%) Query: 147 DDVFLIRAQGLPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQD 205 +D ++R +GLP+S DVL F +C + G G+ F+ + DG+ GDA E+ Sbjct: 345 EDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEEL 404 Query: 206 VQKALEKHRMYMGQRYVEVYEINNEDVDALMKS----------------LQVKSSPVVND 249 Q AL +H+ +G+RY+E++ +V ++ + +P Sbjct: 405 AQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGR 464 Query: 250 GVVRLRGLPYSCNEKDIVDFF----AGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQ 305 VRLRGLPY+ +DI+ F A + + V++ +G R +G+A++Q E A Sbjct: 465 DCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQG-RPSGDAFIQMTSAERALA 523 Query: 306 ALLK-HREEIGNRYIEIFPSRRNEV-RTHVGSYKGKKIASFPTAK 348 A + H++ + RY+E+ P E+ R +G G+ S P K Sbjct: 524 AAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMSPPPCK 568 Score = 82.0 bits (201), Expect = 1e-15 Identities = 62/238 (26%), Positives = 101/238 (42%), Gaps = 59/238 (24%) Query: 242 KSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEE 299 K+ V ++ VVR RGLP+ +++D+ FF GLN+ + ++ +GRR GEA ++F + Sbjct: 239 KADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRN-GEALIRFVD 297 Query: 300 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 359 E + AL +H+ +G RYIE++ + E G S A++++ + V Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIAGG------TSLEVARFLSREDQVI-- 349 Query: 360 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 419 + +RGLPF A D++ Sbjct: 350 -------------------------------------------LRLRGLPFSAGPTDVLG 366 Query: 420 FFAPLKPVR-----ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472 F P PV + G+ TG+A F E A AA+ + + + RYIELF Sbjct: 367 FLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELF 424 Score = 65.9 bits (159), Expect = 8e-11 Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 21/204 (10%) Query: 44 SGRRRLLLLLGAAAAAASQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRA---- 99 +G +L LG T GL P GR P A + A + ALR Sbjct: 359 AGPTDVLGFLGPECPVTGGTEGLLFVRHPDGR---PTGDAFALFACEELAQAALRRHKGM 415 Query: 100 ------SLLPQSLAAAAAVPTRSYSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIR 153 L + A V R S T L P P + LAP + +R Sbjct: 416 LGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIP-FPLAPGTGRD------CVR 468 Query: 154 AQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK- 212 +GLP++ T+ED+L+F + +G+H +LN+ G+ GDA I+M S + A ++ Sbjct: 469 LRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRC 528 Query: 213 HRMYMGQRYVEVYEINNEDVDALM 236 H+ M +RYVEV + E++ ++ Sbjct: 529 HKKVMKERYVEVVPCSTEEMSRVL 552 Score = 32.7 bits (73), Expect = 0.75 Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 25/122 (20%) Query: 72 PPGRLA--GPPAVATSAAAAA------AASYPALRASLLPQSLAAAAAVPTRSYSQESKT 123 PP +L PP T A AA YP+ ++LLP + AA P Y + Sbjct: 565 PPCKLPCLSPPTYTTFQATPTLIPTETAALYPS--SALLPAARVPAAPTPVAYYPGPATQ 622 Query: 124 TYLE-----DLPP----------PPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLN 168 YL PP P LA + L+R QG+P++ M+D+L+ Sbjct: 623 LYLNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLS 682 Query: 169 FF 170 F Sbjct: 683 VF 684 >gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a [Homo sapiens] Length = 346 Score = 115 bits (289), Expect = 7e-26 Identities = 52/79 (65%), Positives = 64/79 (81%) Query: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460 HFVHMRGLPF+A DI NFF+PL P+R+ ++ + G+ATGEADV F THEDAVAAM KD Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 254 Query: 461 RSHVHHRYIELFLNSCPKG 479 ++++ HRYIELFLNS P G Sbjct: 255 KNNMQHRYIELFLNSTPGG 273 Score = 98.6 bits (244), Expect = 1e-20 Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 3/85 (3%) Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQ 305 +DG VRLRGLP+ C++++IV FF GL IV IT MDY+GR TGEA+VQF E+A Sbjct: 14 SDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGR-STGEAFVQFASKEIAEN 72 Query: 306 ALLKHREEIGNRYIEIFPSRRNEVR 330 AL KH+E IG+RYIEIF S R+E++ Sbjct: 73 ALGKHKERIGHRYIEIFRSSRSEIK 97 Score = 58.2 bits (139), Expect = 2e-08 Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Query: 152 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 211 +R +GLP+ C+ E+++ FF I NGI ++ G+ G+A ++ S++ + AL Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75 Query: 212 KHRMYMGQRYVEVYEINNEDV 232 KH+ +G RY+E++ + ++ Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96 Score = 58.2 bits (139), Expect = 2e-08 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 403 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460 V +RGLPF + ++I+ FF L+ P IT+ G++TGEA V F + E A A+ K Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77 Query: 461 RSHVHHRYIELFLNS 475 + + HRYIE+F +S Sbjct: 78 KERIGHRYIEIFRSS 92 Score = 51.6 bits (122), Expect = 2e-06 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311 V +RGLP+ E DI +FF+ LN + + + G R TGEA V+F E A A+ K + Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADG-RATGEADVEFVTHEDAVAAMSKDK 255 Query: 312 EEIGNRYIEIF 322 + +RYIE+F Sbjct: 256 NNMQHRYIELF 266 Score = 45.8 bits (107), Expect = 9e-05 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%) Query: 152 IRAQGLPWSCTMEDVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210 + +GLP+ T D+ NFFS IR +H + DG+ G+A +E + +D A+ Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIR-----VHIDIGADGRATGEADVEFVTHEDAVAAM 251 Query: 211 EKHRMYMGQRYVEVY 225 K + M RY+E++ Sbjct: 252 SKDKNNMQHRYIELF 266 >gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b [Homo sapiens] Length = 331 Score = 115 bits (289), Expect = 7e-26 Identities = 52/79 (65%), Positives = 64/79 (81%) Query: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460 HFVHMRGLPF+A DI NFF+PL P+R+ ++ + G+ATGEADV F THEDAVAAM KD Sbjct: 180 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 239 Query: 461 RSHVHHRYIELFLNSCPKG 479 ++++ HRYIELFLNS P G Sbjct: 240 KNNMQHRYIELFLNSTPGG 258 Score = 98.6 bits (244), Expect = 1e-20 Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 3/85 (3%) Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQ 305 +DG VRLRGLP+ C++++IV FF GL IV IT MDY+GR TGEA+VQF E+A Sbjct: 14 SDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGR-STGEAFVQFASKEIAEN 72 Query: 306 ALLKHREEIGNRYIEIFPSRRNEVR 330 AL KH+E IG+RYIEIF S R+E++ Sbjct: 73 ALGKHKERIGHRYIEIFRSSRSEIK 97 Score = 58.2 bits (139), Expect = 2e-08 Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Query: 152 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 211 +R +GLP+ C+ E+++ FF I NGI ++ G+ G+A ++ S++ + AL Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75 Query: 212 KHRMYMGQRYVEVYEINNEDV 232 KH+ +G RY+E++ + ++ Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96 Score = 58.2 bits (139), Expect = 2e-08 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 403 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460 V +RGLPF + ++I+ FF L+ P IT+ G++TGEA V F + E A A+ K Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77 Query: 461 RSHVHHRYIELFLNS 475 + + HRYIE+F +S Sbjct: 78 KERIGHRYIEIFRSS 92 Score = 45.8 bits (107), Expect = 9e-05 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%) Query: 152 IRAQGLPWSCTMEDVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210 + +GLP+ T D+ NFFS IR +H + DG+ G+A +E + +D A+ Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIR-----VHIDIGADGRATGEADVEFVTHEDAVAAM 236 Query: 211 EKHRMYMGQRYVEVY 225 K + M RY+E++ Sbjct: 237 SKDKNNMQHRYIELF 251 >gi|19923345 RNA binding motif protein 12 [Homo sapiens] Length = 932 Score = 95.1 bits (235), Expect = 1e-19 Identities = 102/424 (24%), Positives = 170/424 (40%), Gaps = 102/424 (24%) Query: 70 PVPPGRLAG-----PPAVATSAAAAAAASYPA-LRASLLPQSLAAAAAV-PTRSYSQESK 122 P+PP ++G PP VA A + P L +L P L V P + SQ S Sbjct: 237 PLPP--MSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSS- 293 Query: 123 TTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGI 182 ++ LP P DD++ + G+P+S DV +FF R+ + + Sbjct: 294 ---VKPLPINP-------------DDLY-VSVHGMPFSAMENDVRDFFHGLRV----DAV 332 Query: 183 HFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVK 242 H L + G+ G+ L++ S QD +AL+++RM M QRYVEV A + K Sbjct: 333 HLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFK 392 Query: 243 S------------------------------SPVVNDGVVRLRGLPYSCNEKDIVDFFAG 272 SP V L+GLP+ K ++DFF Sbjct: 393 QNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKK 452 Query: 273 LNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRT 331 L+IV+ + + Y K TGE +V+F AL +H++ +GNR+I++ P + + Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512 Query: 332 HVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEA 391 + + K++ +F Y ++ E +VN Sbjct: 513 KIDMIR-KRLQNF---SYDQREMILNPEGDVN---------------------------- 540 Query: 392 ADFGTTSSLHFVHMRGLPFQANAQDIINFF--APLKPVRITMEYSSSGKATGEADVHFET 449 S+ H+ +PF D++ F P+ + + ++G+ G+A V F+ Sbjct: 541 ------SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKN 594 Query: 450 HEDA 453 +DA Sbjct: 595 EDDA 598 Score = 82.8 bits (203), Expect = 6e-16 Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 28/234 (11%) Query: 241 VKSSPVVNDGV-VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEE 299 VK P+ D + V + G+P+S E D+ DFF GL + + + D+ GR G V+F Sbjct: 294 VKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN-GNGLVKFLS 352 Query: 300 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 359 P+ +AL ++R + RY+E+ P+ + G K+ P+ + T P Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMG-PSGQ--THP------ 403 Query: 360 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 419 P K K + P A F V+++GLPF+A + +I+ Sbjct: 404 --------PPQTLPRSKSPSGQKRSRSRSPHEAGF-------CVYLKGLPFEAENKHVID 448 Query: 420 FFAPLKPVR--ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIEL 471 FF L V I + Y +GKATGE V F D AA+ + + ++ +R+I++ Sbjct: 449 FFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502 Score = 73.2 bits (178), Expect = 5e-13 Identities = 49/186 (26%), Positives = 92/186 (49%), Gaps = 21/186 (11%) Query: 150 FLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209 F + +GLP+ + V++FF I E+ I+ +GK G+ +E +E D + A Sbjct: 430 FCVYLKGLPFEAENKHVIDFFKKLDIV--EDSIYIAYGPNGKATGEGFVEFRNEADYKAA 487 Query: 210 LEKHRMYMGQRYVEVYEINN----EDVDALMKSLQ----------VKSSPVVNDGVV--R 253 L +H+ YMG R+++V+ I E +D + K LQ + VN V Sbjct: 488 LCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCAH 547 Query: 254 LRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311 + +P+S + D++ F G+ + + + ++D G + G+A VQF+ + A ++ HR Sbjct: 548 ITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNG-QGLGQALVQFKNEDDARKSERLHR 606 Query: 312 EEIGNR 317 +++ R Sbjct: 607 KKLNGR 612 Score = 48.5 bits (114), Expect = 1e-05 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Query: 157 LPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMY 216 +P+S T DVL F + EN +H L++ +G+ G AL++ ++E D +K+ HR Sbjct: 551 IPFSITKMDVLQFLEGIPV--DENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKK 608 Query: 217 MGQRYVEVYEINNEDVDALMKS 238 + R V+ + ED+ + K+ Sbjct: 609 LNGREAFVHVVTLEDMREIEKN 630 Score = 40.4 bits (93), Expect = 0.004 Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 5/75 (6%) Query: 403 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFETHEDAVAAM--L 458 + ++ +PF + +I++FF + P + ++Y+ G TGEA V FE+ ++A AA+ L Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917 Query: 459 KDRSHVHHRYIELFL 473 DR + R ++L L Sbjct: 918 NDRP-IGSRKVKLVL 931 Score = 38.9 bits (89), Expect = 0.010 Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGR-RKTGEAYVQFEEPEMANQALLK 309 V++++ +P++ + +I+DFF G ++ + + Y + TGEA V FE + A A++ Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916 Query: 310 HREE-IGNRYIEI 321 + IG+R +++ Sbjct: 917 LNDRPIGSRKVKL 929 Score = 33.9 bits (76), Expect = 0.34 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALL 308 V+RL+GLP DI FF+GL I D + V + GEA++ F E A ++ Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV-----GGELGEAFIVFATDEDARLGMM 58 Query: 309 KHREEIGNRYIEIFPSRRNEVRTHV 333 + I + + S + E++ + Sbjct: 59 RTGGTIKGSKVTLLLSSKTEMQNMI 83 Score = 32.0 bits (71), Expect = 1.3 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 10/77 (12%) Query: 403 VHMRGLPFQANAQDIINFFAPLK----PVRITMEYSSSGKATGEADVHFETHEDAVAAML 458 + ++GLP A DI +FF+ L V I G GEA + F T EDA M+ Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV------GGELGEAFIVFATDEDARLGMM 58 Query: 459 KDRSHVHHRYIELFLNS 475 + + + L L+S Sbjct: 59 RTGGTIKGSKVTLLLSS 75 Score = 30.8 bits (68), Expect = 2.8 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Query: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQ 207 +IR QGLP D+ +FFS I +G G+H + G G+A I +++D + Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDAR 54 >gi|23510462 RNA binding motif protein 12 [Homo sapiens] Length = 932 Score = 95.1 bits (235), Expect = 1e-19 Identities = 102/424 (24%), Positives = 170/424 (40%), Gaps = 102/424 (24%) Query: 70 PVPPGRLAG-----PPAVATSAAAAAAASYPA-LRASLLPQSLAAAAAV-PTRSYSQESK 122 P+PP ++G PP VA A + P L +L P L V P + SQ S Sbjct: 237 PLPP--MSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSS- 293 Query: 123 TTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGI 182 ++ LP P DD++ + G+P+S DV +FF R+ + + Sbjct: 294 ---VKPLPINP-------------DDLY-VSVHGMPFSAMENDVRDFFHGLRV----DAV 332 Query: 183 HFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVK 242 H L + G+ G+ L++ S QD +AL+++RM M QRYVEV A + K Sbjct: 333 HLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFK 392 Query: 243 S------------------------------SPVVNDGVVRLRGLPYSCNEKDIVDFFAG 272 SP V L+GLP+ K ++DFF Sbjct: 393 QNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKK 452 Query: 273 LNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRT 331 L+IV+ + + Y K TGE +V+F AL +H++ +GNR+I++ P + + Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE 512 Query: 332 HVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEA 391 + + K++ +F Y ++ E +VN Sbjct: 513 KIDMIR-KRLQNF---SYDQREMILNPEGDVN---------------------------- 540 Query: 392 ADFGTTSSLHFVHMRGLPFQANAQDIINFF--APLKPVRITMEYSSSGKATGEADVHFET 449 S+ H+ +PF D++ F P+ + + ++G+ G+A V F+ Sbjct: 541 ------SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKN 594 Query: 450 HEDA 453 +DA Sbjct: 595 EDDA 598 Score = 82.8 bits (203), Expect = 6e-16 Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 28/234 (11%) Query: 241 VKSSPVVNDGV-VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEE 299 VK P+ D + V + G+P+S E D+ DFF GL + + + D+ GR G V+F Sbjct: 294 VKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN-GNGLVKFLS 352 Query: 300 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 359 P+ +AL ++R + RY+E+ P+ + G K+ P+ + T P Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMG-PSGQ--THP------ 403 Query: 360 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 419 P K K + P A F V+++GLPF+A + +I+ Sbjct: 404 --------PPQTLPRSKSPSGQKRSRSRSPHEAGF-------CVYLKGLPFEAENKHVID 448 Query: 420 FFAPLKPVR--ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIEL 471 FF L V I + Y +GKATGE V F D AA+ + + ++ +R+I++ Sbjct: 449 FFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502 Score = 73.2 bits (178), Expect = 5e-13 Identities = 49/186 (26%), Positives = 92/186 (49%), Gaps = 21/186 (11%) Query: 150 FLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209 F + +GLP+ + V++FF I E+ I+ +GK G+ +E +E D + A Sbjct: 430 FCVYLKGLPFEAENKHVIDFFKKLDIV--EDSIYIAYGPNGKATGEGFVEFRNEADYKAA 487 Query: 210 LEKHRMYMGQRYVEVYEINN----EDVDALMKSLQ----------VKSSPVVNDGVV--R 253 L +H+ YMG R+++V+ I E +D + K LQ + VN V Sbjct: 488 LCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCAH 547 Query: 254 LRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311 + +P+S + D++ F G+ + + + ++D G + G+A VQF+ + A ++ HR Sbjct: 548 ITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNG-QGLGQALVQFKNEDDARKSERLHR 606 Query: 312 EEIGNR 317 +++ R Sbjct: 607 KKLNGR 612 Score = 48.5 bits (114), Expect = 1e-05 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Query: 157 LPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMY 216 +P+S T DVL F + EN +H L++ +G+ G AL++ ++E D +K+ HR Sbjct: 551 IPFSITKMDVLQFLEGIPV--DENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKK 608 Query: 217 MGQRYVEVYEINNEDVDALMKS 238 + R V+ + ED+ + K+ Sbjct: 609 LNGREAFVHVVTLEDMREIEKN 630 Score = 40.4 bits (93), Expect = 0.004 Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 5/75 (6%) Query: 403 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFETHEDAVAAM--L 458 + ++ +PF + +I++FF + P + ++Y+ G TGEA V FE+ ++A AA+ L Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917 Query: 459 KDRSHVHHRYIELFL 473 DR + R ++L L Sbjct: 918 NDRP-IGSRKVKLVL 931 Score = 38.9 bits (89), Expect = 0.010 Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGR-RKTGEAYVQFEEPEMANQALLK 309 V++++ +P++ + +I+DFF G ++ + + Y + TGEA V FE + A A++ Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916 Query: 310 HREE-IGNRYIEI 321 + IG+R +++ Sbjct: 917 LNDRPIGSRKVKL 929 Score = 33.9 bits (76), Expect = 0.34 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALL 308 V+RL+GLP DI FF+GL I D + V + GEA++ F E A ++ Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV-----GGELGEAFIVFATDEDARLGMM 58 Query: 309 KHREEIGNRYIEIFPSRRNEVRTHV 333 + I + + S + E++ + Sbjct: 59 RTGGTIKGSKVTLLLSSKTEMQNMI 83 Score = 32.0 bits (71), Expect = 1.3 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 10/77 (12%) Query: 403 VHMRGLPFQANAQDIINFFAPLK----PVRITMEYSSSGKATGEADVHFETHEDAVAAML 458 + ++GLP A DI +FF+ L V I G GEA + F T EDA M+ Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV------GGELGEAFIVFATDEDARLGMM 58 Query: 459 KDRSHVHHRYIELFLNS 475 + + + L L+S Sbjct: 59 RTGGTIKGSKVTLLLSS 75 Score = 30.8 bits (68), Expect = 2.8 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Query: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQ 207 +IR QGLP D+ +FFS I +G G+H + G G+A I +++D + Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDAR 54 >gi|118722349 RNA binding motif protein 12B [Homo sapiens] Length = 1001 Score = 88.6 bits (218), Expect = 1e-17 Identities = 80/337 (23%), Positives = 135/337 (40%), Gaps = 74/337 (21%) Query: 155 QGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHR 214 +GLP+ +DV FFS + +G+ FL + DG+ GDA+++ S D L+ HR Sbjct: 160 RGLPYLVNEDDVRVFFSGLCV----DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHR 215 Query: 215 MYMGQRYVEVYEINNE-----------DVDALMKSLQVKSSPVVNDG------------- 250 +MG R++EV + + + + D L +S + +ND Sbjct: 216 SFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPRR 275 Query: 251 ---------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPE 301 V L+ L S +E+D+ +FF G ++ D Y+ +T A+V F+ + Sbjct: 276 TRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLK 335 Query: 302 MANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHE 361 N AL H+ + R + I P R ++ + Y+ K+ S Sbjct: 336 DYNTALSLHKTVLQYRPVHIDPISRKQMLKFIARYEKKRSGSL----------------- 378 Query: 362 VNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF 421 E + P V +K + G + +++R PF ++ FF Sbjct: 379 ---------------ERDRPGHVSQKYSQE---GNSGQKLCIYIRNFPFDVTKVEVQKFF 420 Query: 422 AP--LKPVRITMEYSSSGKATGEADVHFETHEDAVAA 456 A L I + Y G GEA V F++ E A+ A Sbjct: 421 ADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457 Score = 62.4 bits (150), Expect = 9e-10 Identities = 80/381 (20%), Positives = 145/381 (38%), Gaps = 89/381 (23%) Query: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210 +IR GLP+ D+ +FF+ I +G G+H + G G+A I +++D ++A+ Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDG--GVHII----GGEIGEAFIIFATDEDARRAI 57 Query: 211 EKHRMYMGQRYVEVY-----------EINNED-------------VDALMKSLQVKSSPV 246 + ++ VE++ E+ D VD+L ++ Sbjct: 58 SRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEA 117 Query: 247 VNDGV----------------------------------VRLRGLPYSCNEKDIVDFFAG 272 N G + LRGLPY NE D+ FF+G Sbjct: 118 SNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSG 177 Query: 273 LNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 332 L + + F+ + G R G+A V+F A+ L HR +G+R+IE+ + Sbjct: 178 LCVDGVIFLKHHDG-RNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQ-WIE 235 Query: 333 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAA 392 G K+ ++ + P + + H F + P+ + P Sbjct: 236 FGGNAVKEGDVLRRSEEHSPPRGINDRH-----------FRKRSHSKSPRRTRSRSPLG- 283 Query: 393 DFGTTSSLHFVHMRGLPFQANAQDIINFF--APLKPVRITMEYSSSGKATGEADVHFETH 450 +VH++ L + +D+ NFF L +I Y + T A V F+T Sbjct: 284 --------FYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKTL 334 Query: 451 EDAVAAMLKDRSHVHHRYIEL 471 +D A+ ++ + +R + + Sbjct: 335 KDYNTALSLHKTVLQYRPVHI 355 Score = 53.1 bits (126), Expect = 5e-07 Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 31/241 (12%) Query: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310 V+RL GLP+ DI FF GL I D V G + GEA++ F E A +A+ + Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPD-GGVHIIGG--EIGEAFIIFATDEDARRAISRS 60 Query: 311 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 370 I + +E+F S + E++ + + ++ + + + Sbjct: 61 GGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSL------------SN 108 Query: 371 AFESEKEIELPKEVPEKLPEAADFGTTSSLH----------------FVHMRGLPFQANA 414 ES KE + + A F T + H ++ +RGLP+ N Sbjct: 109 FIESVKEEASNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNE 168 Query: 415 QDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLN 474 D+ FF+ L + G+ G+A V F + DA + RS + R+IE+ Sbjct: 169 DDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQG 228 Query: 475 S 475 S Sbjct: 229 S 229 Score = 40.0 bits (92), Expect = 0.005 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 4/63 (6%) Query: 403 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFETHEDAVAAM--L 458 + + LPF+AN +I++FF + P ++++Y+ G TGEA V + +A+AA+ L Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986 Query: 459 KDR 461 DR Sbjct: 987 NDR 989 Score = 32.7 bits (73), Expect = 0.75 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 152 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 211 I + P+ T +V FF+D + E+ I+ L + G G+AL++ +SE+ KA Sbjct: 402 IYIRNFPFDVTKVEVQKFFADFLL--AEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAER 459 Query: 212 KHR 214 +R Sbjct: 460 LNR 462 Score = 30.8 bits (68), Expect = 2.8 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGR-RKTGEAYV 295 +++ LP+ N +I+DFF G I+ + + Y + TGEA V Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIV 971 >gi|226497734 RNA binding motif protein 19 [Homo sapiens] Length = 960 Score = 65.5 bits (158), Expect = 1e-10 Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 24/233 (10%) Query: 130 PPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD 189 PP E ++E ++ +G P++ T ++V+ F + + I + N Sbjct: 274 PPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAH 329 Query: 190 GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKS------ 243 G + G ++ +E++V++AL+ +R YMG RY+EV+ N KS Sbjct: 330 GNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRIL 389 Query: 244 ------SPVVNDGVVRLRGLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRRKTGEAYVQ 296 + G + +R LPY+ E+D+ F+ + ++ + +D ++ G A++ Sbjct: 390 GENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449 Query: 297 FEEPEMANQALLKHREEI-GNRYIEIFPS----RRNEVRTHVG--SYKGKKIA 342 F PE A +A + ++ R + + PS +E + +G SYK KK A Sbjct: 450 FMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEA 502 Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/92 (32%), Positives = 49/92 (53%) Query: 381 PKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKAT 440 P E + + A+ ++ H V +RG PF ++++ F APLKPV I + ++ G T Sbjct: 274 PPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKT 333 Query: 441 GEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472 G V F E+ A+ +R ++ RYIE+F Sbjct: 334 GYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 365 Score = 35.0 bits (79), Expect = 0.15 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 15/95 (15%) Query: 382 KEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDI---INFFAPLKPVRITMEYSSSGK 438 K+VP K TTS + +R +PFQA++++I + F LK VR+ + + +G Sbjct: 823 KQVPRKQ-------TTSK---ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGT 872 Query: 439 ATGEADVHFETHEDAVAAM--LKDRSHVHHRYIEL 471 G V F T +DA A L +H++ R + L Sbjct: 873 HRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVL 907 >gi|226497654 RNA binding motif protein 19 [Homo sapiens] Length = 960 Score = 65.5 bits (158), Expect = 1e-10 Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 24/233 (10%) Query: 130 PPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD 189 PP E ++E ++ +G P++ T ++V+ F + + I + N Sbjct: 274 PPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAH 329 Query: 190 GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKS------ 243 G + G ++ +E++V++AL+ +R YMG RY+EV+ N KS Sbjct: 330 GNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRIL 389 Query: 244 ------SPVVNDGVVRLRGLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRRKTGEAYVQ 296 + G + +R LPY+ E+D+ F+ + ++ + +D ++ G A++ Sbjct: 390 GENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449 Query: 297 FEEPEMANQALLKHREEI-GNRYIEIFPS----RRNEVRTHVG--SYKGKKIA 342 F PE A +A + ++ R + + PS +E + +G SYK KK A Sbjct: 450 FMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEA 502 Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/92 (32%), Positives = 49/92 (53%) Query: 381 PKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKAT 440 P E + + A+ ++ H V +RG PF ++++ F APLKPV I + ++ G T Sbjct: 274 PPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKT 333 Query: 441 GEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472 G V F E+ A+ +R ++ RYIE+F Sbjct: 334 GYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 365 Score = 35.0 bits (79), Expect = 0.15 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 15/95 (15%) Query: 382 KEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDI---INFFAPLKPVRITMEYSSSGK 438 K+VP K TTS + +R +PFQA++++I + F LK VR+ + + +G Sbjct: 823 KQVPRKQ-------TTSK---ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGT 872 Query: 439 ATGEADVHFETHEDAVAAM--LKDRSHVHHRYIEL 471 G V F T +DA A L +H++ R + L Sbjct: 873 HRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVL 907 >gi|226497574 RNA binding motif protein 19 [Homo sapiens] Length = 960 Score = 65.5 bits (158), Expect = 1e-10 Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 24/233 (10%) Query: 130 PPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD 189 PP E ++E ++ +G P++ T ++V+ F + + I + N Sbjct: 274 PPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLK----PVAIRIVRNAH 329 Query: 190 GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKS------ 243 G + G ++ +E++V++AL+ +R YMG RY+EV+ N KS Sbjct: 330 GNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRIL 389 Query: 244 ------SPVVNDGVVRLRGLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRRKTGEAYVQ 296 + G + +R LPY+ E+D+ F+ + ++ + +D ++ G A++ Sbjct: 390 GENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449 Query: 297 FEEPEMANQALLKHREEI-GNRYIEIFPS----RRNEVRTHVG--SYKGKKIA 342 F PE A +A + ++ R + + PS +E + +G SYK KK A Sbjct: 450 FMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEA 502 Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/92 (32%), Positives = 49/92 (53%) Query: 381 PKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKAT 440 P E + + A+ ++ H V +RG PF ++++ F APLKPV I + ++ G T Sbjct: 274 PPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKT 333 Query: 441 GEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472 G V F E+ A+ +R ++ RYIE+F Sbjct: 334 GYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 365 Score = 35.0 bits (79), Expect = 0.15 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 15/95 (15%) Query: 382 KEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDI---INFFAPLKPVRITMEYSSSGK 438 K+VP K TTS + +R +PFQA++++I + F LK VR+ + + +G Sbjct: 823 KQVPRKQ-------TTSK---ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGT 872 Query: 439 ATGEADVHFETHEDAVAAM--LKDRSHVHHRYIEL 471 G V F T +DA A L +H++ R + L Sbjct: 873 HRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVL 907 >gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b [Homo sapiens] Length = 336 Score = 50.4 bits (119), Expect = 3e-06 Identities = 64/275 (23%), Positives = 106/275 (38%), Gaps = 56/275 (20%) Query: 54 GAAAAAASQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRASLLPQSLAAAAAVP 113 GAAAAA + G G G AT AAAAA S A+ Sbjct: 10 GAAAAATAAVGG------SAGEQEGAMVAATQGAAAAAGSGAGTGGG--------TASGG 55 Query: 114 TRSYSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFS-- 171 T S ES+ ++ SK EE+ +F+ GL W T +D+ ++FS Sbjct: 56 TEGGSAESEGAKID-----------ASKNEEDEGKMFI---GGLSWDTTKKDLKDYFSKF 101 Query: 172 ----DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEI 227 DC ++ L G+ RG + + + V K +++ + +++ Sbjct: 102 GEVVDCTLK--------LDPITGRSRGFGFVLFKESESVDKVMDQ----------KEHKL 143 Query: 228 NNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD-ITFVMDYRG 286 N + +D PV + + GL E+ I ++F G V+ I MD + Sbjct: 144 NGKVIDPKRAKAMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT 200 Query: 287 RRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEI 321 ++ G ++ F+E E + + K +G EI Sbjct: 201 NKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI 235 Score = 37.0 bits (84), Expect = 0.040 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRRKTGEAYVQFEEPEMANQA 306 ++G + + GL + +KD+ D+F+ +VD T +D R G +V F+E E ++ Sbjct: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135 Query: 307 LLKHREEIGNRYIEIFPSRRNEVRT 331 + + ++ + I+ P R ++T Sbjct: 136 MDQKEHKLNGKVID--PKRAKAMKT 158 >gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d [Homo sapiens] Length = 287 Score = 50.4 bits (119), Expect = 3e-06 Identities = 64/275 (23%), Positives = 106/275 (38%), Gaps = 56/275 (20%) Query: 54 GAAAAAASQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRASLLPQSLAAAAAVP 113 GAAAAA + G G G AT AAAAA S A+ Sbjct: 10 GAAAAATAAVGG------SAGEQEGAMVAATQGAAAAAGSGAGTGGG--------TASGG 55 Query: 114 TRSYSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFS-- 171 T S ES+ ++ SK EE+ +F+ GL W T +D+ ++FS Sbjct: 56 TEGGSAESEGAKID-----------ASKNEEDEGKMFI---GGLSWDTTKKDLKDYFSKF 101 Query: 172 ----DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEI 227 DC ++ L G+ RG + + + V K +++ + +++ Sbjct: 102 GEVVDCTLK--------LDPITGRSRGFGFVLFKESESVDKVMDQ----------KEHKL 143 Query: 228 NNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD-ITFVMDYRG 286 N + +D PV + + GL E+ I ++F G V+ I MD + Sbjct: 144 NGKVIDPKRAKAMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT 200 Query: 287 RRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEI 321 ++ G ++ F+E E + + K +G EI Sbjct: 201 NKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI 235 Score = 37.0 bits (84), Expect = 0.040 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Query: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRRKTGEAYVQFEEPEMANQA 306 ++G + + GL + +KD+ D+F+ +VD T +D R G +V F+E E ++ Sbjct: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135 Query: 307 LLKHREEIGNRYIEIFPSRRNEVRT 331 + + ++ + I+ P R ++T Sbjct: 136 MDQKEHKLNGKVID--PKRAKAMKT 158 >gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a [Homo sapiens] Length = 355 Score = 48.5 bits (114), Expect = 1e-05 Identities = 63/277 (22%), Positives = 104/277 (37%), Gaps = 41/277 (14%) Query: 54 GAAAAAASQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRASLLPQSLAAAAAVP 113 GAAAAA + G G G AT AAAAA S +A Sbjct: 10 GAAAAATAAVGG------SAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAES 63 Query: 114 TRSYSQESKTTYLE--DLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFS 171 + SK E P E A ++ EE + + GL W T +D+ ++FS Sbjct: 64 EGAKIDASKNEEDEGHSNSSPRHSEAATAQREE-----WKMFIGGLSWDTTKKDLKDYFS 118 Query: 172 ------DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 225 DC ++ L G+ RG + + + V K +++ + + Sbjct: 119 KFGEVVDCTLK--------LDPITGRSRGFGFVLFKESESVDKVMDQ----------KEH 160 Query: 226 EINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD-ITFVMDY 284 ++N + +D PV + + GL E+ I ++F G V+ I MD Sbjct: 161 KLNGKVIDPKRAKAMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 217 Query: 285 RGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEI 321 + ++ G ++ F+E E + + K +G EI Sbjct: 218 KTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI 254 Score = 35.0 bits (79), Expect = 0.15 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Query: 256 GLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEI 314 GL + +KD+ D+F+ +VD T +D R G +V F+E E ++ + + ++ Sbjct: 103 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 162 Query: 315 GNRYIEIFPSRRNEVRT 331 + I+ P R ++T Sbjct: 163 NGKVID--PKRAKAMKT 177 >gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c [Homo sapiens] Length = 306 Score = 48.5 bits (114), Expect = 1e-05 Identities = 63/277 (22%), Positives = 104/277 (37%), Gaps = 41/277 (14%) Query: 54 GAAAAAASQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYPALRASLLPQSLAAAAAVP 113 GAAAAA + G G G AT AAAAA S +A Sbjct: 10 GAAAAATAAVGG------SAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAES 63 Query: 114 TRSYSQESKTTYLE--DLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFS 171 + SK E P E A ++ EE + + GL W T +D+ ++FS Sbjct: 64 EGAKIDASKNEEDEGHSNSSPRHSEAATAQREE-----WKMFIGGLSWDTTKKDLKDYFS 118 Query: 172 ------DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 225 DC ++ L G+ RG + + + V K +++ + + Sbjct: 119 KFGEVVDCTLK--------LDPITGRSRGFGFVLFKESESVDKVMDQ----------KEH 160 Query: 226 EINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD-ITFVMDY 284 ++N + +D PV + + GL E+ I ++F G V+ I MD Sbjct: 161 KLNGKVIDPKRAKAMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN 217 Query: 285 RGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEI 321 + ++ G ++ F+E E + + K +G EI Sbjct: 218 KTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI 254 Score = 35.0 bits (79), Expect = 0.15 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Query: 256 GLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEI 314 GL + +KD+ D+F+ +VD T +D R G +V F+E E ++ + + ++ Sbjct: 103 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 162 Query: 315 GNRYIEIFPSRRNEVRT 331 + I+ P R ++T Sbjct: 163 NGKVID--PKRAKAMKT 177 >gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo sapiens] Length = 600 Score = 46.6 bits (109), Expect = 5e-05 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 6/85 (7%) Query: 133 PEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRI-----RNGENGIHFLLN 187 P+ +L P +E D I QGL S T++D+ +FF C + R G+ IH L+ Sbjct: 288 PDLDLGPPVDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD 347 Query: 188 RD-GKRRGDALIEMESEQDVQKALE 211 ++ GK +GDA + E + A+E Sbjct: 348 KETGKPKGDATVSYEDPPTAKAAVE 372 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,396,423 Number of Sequences: 37866 Number of extensions: 950304 Number of successful extensions: 6992 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 161 Number of HSP's that attempted gapping in prelim test: 5819 Number of HSP's gapped (non-prelim): 880 length of query: 480 length of database: 18,247,518 effective HSP length: 106 effective length of query: 374 effective length of database: 14,233,722 effective search space: 5323412028 effective search space used: 5323412028 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.