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Search of human proteins with 148728166
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148728166 HIV-1 Tat interactive protein 2, 30kDa isoform a
[Homo sapiens]
(276 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148728166 HIV-1 Tat interactive protein 2, 30kDa isoform a [H... 546 e-155
gi|148728172 HIV-1 Tat interactive protein 2, 30kDa isoform b [H... 483 e-137
gi|148728168 HIV-1 Tat interactive protein 2, 30kDa isoform b [H... 483 e-137
gi|148728164 HIV-1 Tat interactive protein 2, 30kDa isoform b [H... 483 e-137
gi|148728170 HIV-1 Tat interactive protein 2, 30kDa isoform c [H... 201 4e-52
gi|10190746 retinol dehydrogenase 14 (all-trans and 9-cis) [Homo... 33 0.27
gi|24497554 homeobox A13 [Homo sapiens] 32 0.46
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 32 0.79
gi|4502419 biliverdin reductase B (flavin reductase (NADPH)) [Ho... 31 1.3
gi|34878749 F-box protein 44 isoform 2 [Homo sapiens] 30 1.8
gi|34878735 F-box protein 44 isoform 1 [Homo sapiens] 30 1.8
gi|34878753 F-box protein 44 isoform 2 [Homo sapiens] 30 1.8
gi|62388868 F-box protein 44 isoform 1 [Homo sapiens] 30 1.8
gi|5031613 growth differentiation factor 11 precursor [Homo sapi... 30 3.0
gi|150417973 supervillin isoform 2 [Homo sapiens] 30 3.0
gi|150417971 supervillin isoform 1 [Homo sapiens] 30 3.0
gi|5031759 homeobox A11 [Homo sapiens] 29 3.9
gi|14318424 apoptosis-inducing factor (AIF)-like mitchondrion-as... 29 5.1
gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo ... 29 5.1
gi|45643135 MORF-related gene 15 isoform 2 [Homo sapiens] 28 6.7
gi|5803102 MORF-related gene 15 isoform 1 [Homo sapiens] 28 6.7
gi|209413756 synapsin III isoform IIIg [Homo sapiens] 28 6.7
gi|148539642 alkB, alkylation repair homolog 5 [Homo sapiens] 28 6.7
gi|223468602 t-complex 10-like 2 [Homo sapiens] 28 8.7
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ... 28 8.7
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 28 8.7
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 28 8.7
gi|6996928 mortality factor 4 [Homo sapiens] 28 8.7
gi|157364934 fibrosin [Homo sapiens] 28 8.7
>gi|148728166 HIV-1 Tat interactive protein 2, 30kDa isoform a [Homo
sapiens]
Length = 276
Score = 546 bits (1406), Expect = e-155
Identities = 276/276 (100%), Positives = 276/276 (100%)
Query: 1 MAGPAALSAAAAAALAAALLLLRREDPGPGAGPSMAETEALSKLREDFRMQNKSVFILGA 60
MAGPAALSAAAAAALAAALLLLRREDPGPGAGPSMAETEALSKLREDFRMQNKSVFILGA
Sbjct: 1 MAGPAALSAAAAAALAAALLLLRREDPGPGAGPSMAETEALSKLREDFRMQNKSVFILGA 60
Query: 61 SGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHD 120
SGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHD
Sbjct: 61 SGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHD 120
Query: 121 VGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQV 180
VGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQV
Sbjct: 121 VGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQV 180
Query: 181 KGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTV 240
KGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTV
Sbjct: 181 KGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTV 240
Query: 241 VRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSLKP 276
VRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSLKP
Sbjct: 241 VRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSLKP 276
>gi|148728172 HIV-1 Tat interactive protein 2, 30kDa isoform b [Homo
sapiens]
Length = 242
Score = 483 bits (1244), Expect = e-137
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 35 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 94
MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 95 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 154
AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
Query: 155 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 214
AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
Query: 215 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 274
EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
Sbjct: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
Query: 275 KP 276
KP
Sbjct: 241 KP 242
>gi|148728168 HIV-1 Tat interactive protein 2, 30kDa isoform b [Homo
sapiens]
Length = 242
Score = 483 bits (1244), Expect = e-137
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 35 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 94
MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 95 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 154
AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
Query: 155 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 214
AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
Query: 215 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 274
EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
Sbjct: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
Query: 275 KP 276
KP
Sbjct: 241 KP 242
>gi|148728164 HIV-1 Tat interactive protein 2, 30kDa isoform b [Homo
sapiens]
Length = 242
Score = 483 bits (1244), Expect = e-137
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 35 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 94
MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 95 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 154
AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
Query: 155 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 214
AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG
Sbjct: 121 AGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPG 180
Query: 215 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 274
EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL
Sbjct: 181 EWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGSL 240
Query: 275 KP 276
KP
Sbjct: 241 KP 242
>gi|148728170 HIV-1 Tat interactive protein 2, 30kDa isoform c [Homo
sapiens]
Length = 133
Score = 201 bits (512), Expect = 4e-52
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 35 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 94
MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1 MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
Query: 95 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 135
AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA
Sbjct: 61 AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 101
>gi|10190746 retinol dehydrogenase 14 (all-trans and 9-cis) [Homo
sapiens]
Length = 336
Score = 33.1 bits (74), Expect = 0.27
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 6 ALSAAAAAALAAALLLLRREDPGPGAGPSMAETEALSKLREDFRMQNKSVFILGASGETG 65
A +AA AAL AL L R GP + L + + M K+V I GA+ G
Sbjct: 4 ATAAAVLAALGGALWLAARRFVGP-------RVQRLRRGGDPGLMHGKTVLITGANSGLG 56
Query: 66 RVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEV 103
R E+L G ++G R EEA + +E+
Sbjct: 57 RATAAELLRLG---ARVIMGCRDRARAEEAAGQLRREL 91
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 32.3 bits (72), Expect = 0.46
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 2 AGPAALSAAAAAALAAALLLLRREDPGPG-AGPSMAE 37
A P+A +AAAAAA AAA GPG AGP+ AE
Sbjct: 112 APPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAGAE 148
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 31.6 bits (70), Expect = 0.79
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 2 AGPA-ALSAAAAAALAAA----LLLLRREDPGPGAGPSMAETEALSKLREDFRMQNKSVF 56
A PA AL+AAAA ALAAA L P P A P++A A + Q SV
Sbjct: 516 AAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSHSQKPSVP 575
Query: 57 ILGAS 61
++ AS
Sbjct: 576 LIQAS 580
>gi|4502419 biliverdin reductase B (flavin reductase (NADPH)) [Homo
sapiens]
Length = 206
Score = 30.8 bits (68), Expect = 1.3
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 50 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKL 109
M K + I GA+G+TG L + ++ G +VT++ R E + + V D +
Sbjct: 1 MAVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLPSEGPRPAHVVVGDVLQA 58
Query: 110 DDYASAFQGHDVGFCCLGT 128
D G D LGT
Sbjct: 59 ADVDKTVAGQDAVIVLLGT 77
>gi|34878749 F-box protein 44 isoform 2 [Homo sapiens]
Length = 224
Score = 30.4 bits (67), Expect = 1.8
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 136 EGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDR 195
EGF+ D D + ++ H NLL + A++ F L V G E KVE+L D+
Sbjct: 54 EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ 113
Query: 196 YSVF 199
F
Sbjct: 114 RKEF 117
>gi|34878735 F-box protein 44 isoform 1 [Homo sapiens]
Length = 255
Score = 30.4 bits (67), Expect = 1.8
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 136 EGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDR 195
EGF+ D D + ++ H NLL + A++ F L V G E KVE+L D+
Sbjct: 54 EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ 113
Query: 196 YSVF 199
F
Sbjct: 114 RKEF 117
>gi|34878753 F-box protein 44 isoform 2 [Homo sapiens]
Length = 224
Score = 30.4 bits (67), Expect = 1.8
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 136 EGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDR 195
EGF+ D D + ++ H NLL + A++ F L V G E KVE+L D+
Sbjct: 54 EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ 113
Query: 196 YSVF 199
F
Sbjct: 114 RKEF 117
>gi|62388868 F-box protein 44 isoform 1 [Homo sapiens]
Length = 255
Score = 30.4 bits (67), Expect = 1.8
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 136 EGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDR 195
EGF+ D D + ++ H NLL + A++ F L V G E KVE+L D+
Sbjct: 54 EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ 113
Query: 196 YSVF 199
F
Sbjct: 114 RKEF 117
>gi|5031613 growth differentiation factor 11 precursor [Homo
sapiens]
Length = 407
Score = 29.6 bits (65), Expect = 3.0
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 3 GPAALSAAAAAALAAALLLLRREDPGPGAGP 33
GPAA +AAAAAA AA + R P P P
Sbjct: 27 GPAAAAAAAAAAAAAGVGGERSSRPAPSVAP 57
>gi|150417973 supervillin isoform 2 [Homo sapiens]
Length = 2214
Score = 29.6 bits (65), Expect = 3.0
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 161 FNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQES---RPGEW- 216
F L SS G ++ F+Y V + + L+ D YS +P + L D G W
Sbjct: 2004 FILSSSSGDFAATEFVYPARAPSVVSSMPFLQEDLYSAPQPALFLVDNHHEVYLWQGWWP 2063
Query: 217 LVRKFFGSLPDSWASGHSVPVVTVVR 242
+ K GS WAS + TV++
Sbjct: 2064 IENKITGSARIRWASDRKSAMETVLQ 2089
>gi|150417971 supervillin isoform 1 [Homo sapiens]
Length = 1788
Score = 29.6 bits (65), Expect = 3.0
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 161 FNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQES---RPGEW- 216
F L SS G ++ F+Y V + + L+ D YS +P + L D G W
Sbjct: 1578 FILSSSSGDFAATEFVYPARAPSVVSSMPFLQEDLYSAPQPALFLVDNHHEVYLWQGWWP 1637
Query: 217 LVRKFFGSLPDSWASGHSVPVVTVVR 242
+ K GS WAS + TV++
Sbjct: 1638 IENKITGSARIRWASDRKSAMETVLQ 1663
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 29.3 bits (64), Expect = 3.9
Identities = 21/62 (33%), Positives = 27/62 (43%)
Query: 3 GPAALSAAAAAALAAALLLLRREDPGPGAGPSMAETEALSKLREDFRMQNKSVFILGASG 62
GP A +A +AAA AAA G G ET A ++ +E R S +SG
Sbjct: 168 GPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSG 227
Query: 63 ET 64
T
Sbjct: 228 HT 229
>gi|14318424 apoptosis-inducing factor (AIF)-like
mitchondrion-associated inducer of death [Homo sapiens]
Length = 373
Score = 28.9 bits (63), Expect = 5.1
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 7 LSAAAAAALAAALLLLRREDPGPGAGPSMAETEALSKLREDF--RMQNKSVFILGASGET 64
L A + +L P PG ++ +A + ED ++Q ++ G
Sbjct: 94 LQGGEALPFSHLILATGSTGPFPGKFNEVSSQQAAIQAYEDMVRQVQRSRFIVVVGGGSA 153
Query: 65 GRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEV 103
G + EI + +VTLI + D+E +V QEV
Sbjct: 154 GVEMAAEIKTEYPEKEVTLIHSQVALADKELLPSVRQEV 192
>gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo
sapiens]
Length = 782
Score = 28.9 bits (63), Expect = 5.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 7 LSAAAAAALAAALLLLRREDPGPGA 31
L+A A L A L+LR DPGPGA
Sbjct: 56 LAACAGGDLDEARLMLRAADPGPGA 80
>gi|45643135 MORF-related gene 15 isoform 2 [Homo sapiens]
Length = 362
Score = 28.5 bits (62), Expect = 6.7
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 23 RREDPGPGAGPSMAETEA---LSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFS 79
+++ PG G G S +ET + R D ++N+ F+ + +V + E L+ L
Sbjct: 153 KQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFM---NRVEVKVKIPEELKPWLVD 209
Query: 80 KVTLIGRRKLTFDEEAYKNVNQEVVDF 106
LI R+K F A KNV+ + D+
Sbjct: 210 DWDLITRQKQLFYLPAKKNVDSILEDY 236
>gi|5803102 MORF-related gene 15 isoform 1 [Homo sapiens]
Length = 323
Score = 28.5 bits (62), Expect = 6.7
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 23 RREDPGPGAGPSMAETEA---LSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFS 79
+++ PG G G S +ET + R D ++N+ F+ + +V + E L+ L
Sbjct: 114 KQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFM---NRVEVKVKIPEELKPWLVD 170
Query: 80 KVTLIGRRKLTFDEEAYKNVNQEVVDF 106
LI R+K F A KNV+ + D+
Sbjct: 171 DWDLITRQKQLFYLPAKKNVDSILEDY 197
>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
Length = 579
Score = 28.5 bits (62), Expect = 6.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 170 DKSSNFLYLQVKGEVEAKVEELKFDRYSV--FRPGVLLCDRQESRPGEWLVRKF 221
D S F +V GE+E +VE+ +F ++ + G + D Q R G +VR F
Sbjct: 103 DWSKYFHGKKVNGEIEIRVEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVRSF 156
>gi|148539642 alkB, alkylation repair homolog 5 [Homo sapiens]
Length = 394
Score = 28.5 bits (62), Expect = 6.7
Identities = 18/50 (36%), Positives = 23/50 (46%)
Query: 2 AGPAALSAAAAAALAAALLLLRREDPGPGAGPSMAETEALSKLREDFRMQ 51
AG +AAAAAA+AAA +P P +G E R D+ Q
Sbjct: 25 AGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQEDSDPERSDYEEQ 74
>gi|223468602 t-complex 10-like 2 [Homo sapiens]
Length = 353
Score = 28.1 bits (61), Expect = 8.7
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 25 EDPGPGAGPSMAETEALSKL-REDF---RMQNKSVFILGASGETGRVLLKEILEQGLFSK 80
EDP PGAG +M +T A +++ RED M + I E GR +Q L++
Sbjct: 18 EDPCPGAGAAMEKTPAAAEVPREDSNAGEMPSLQQQITSLHQELGR-------QQSLWAD 70
Query: 81 VTLIGRRKLTFDEEAYKNVNQEV 103
+ RKL +A + N+E+
Sbjct: 71 I----HRKLQSHMDALRKQNREL 89
>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
sapiens]
Length = 278
Score = 28.1 bits (61), Expect = 8.7
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 3 GPAALSAAAAAALAAALLLLRREDPGPGAGPS 34
GPA + AA+A A L RE P PGAGPS
Sbjct: 61 GPAGRAPAASAETA---LPRPREPPEPGAGPS 89
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 28.1 bits (61), Expect = 8.7
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 5 AALSAAAAAALAAA-LLLLRREDPGPGA----GPSMAETEALSKLREDFRMQNKSV 55
AA++A AAA A A ++++ E PGP G + A TEA + + + + K+V
Sbjct: 6 AAVAATVAAADATATIVVIEDEQPGPSTSQEEGAAAAATEATAATEKGEKKKEKNV 61
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 28.1 bits (61), Expect = 8.7
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 5 AALSAAAAAALAAA-LLLLRREDPGPGA----GPSMAETEALSKLREDFRMQNKSV 55
AA++A AAA A A ++++ E PGP G + A TEA + + + + K+V
Sbjct: 6 AAVAATVAAADATATIVVIEDEQPGPSTSQEEGAAAAATEATAATEKGEKKKEKNV 61
>gi|6996928 mortality factor 4 [Homo sapiens]
Length = 235
Score = 28.1 bits (61), Expect = 8.7
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 23 RREDPGPGAGPSMAETEALSKLRE---DFRMQNKSVFILGASGETGRVLLKEILEQGLFS 79
+++ PG G G S +ET + + D ++N+ F+ + +V + E L+ L
Sbjct: 26 KQKTPGNGDGGSTSETPQPPRKKRAQVDPTVENEETFM---NRVEVKVKIPEELKPWLVD 82
Query: 80 KVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGH 119
LI R+K F A KNV+ L+DYA+ + H
Sbjct: 83 DWDLITRQKQLFYLPAEKNVD------SILEDYANYKKSH 116
>gi|157364934 fibrosin [Homo sapiens]
Length = 460
Score = 28.1 bits (61), Expect = 8.7
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 2 AGPAALSAAAAAALAAAL--------LLLRREDPGPGAGPS 34
A AA +AAAAAA AAA LL R P P GPS
Sbjct: 311 AAAAAAAAAAAAAAAAAAATGPQGLHLLFERPRPPPFLGPS 351
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,267,701
Number of Sequences: 37866
Number of extensions: 438122
Number of successful extensions: 1783
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1731
Number of HSP's gapped (non-prelim): 48
length of query: 276
length of database: 18,247,518
effective HSP length: 101
effective length of query: 175
effective length of database: 14,423,052
effective search space: 2524034100
effective search space used: 2524034100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.