Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: AIFM2 Sequence: fasta or formatted (373aa) NCBI GI: 14318424
Description:

apoptosis-inducing factor (AIF)-like mitchondrion-associated inducer of death

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death
Mitochondria

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         33           3
 C cysteine            0.5          2           1
 D aspartate           2.9         11           1
 E glutamate           5.9         22           2
 F phenylalanine       4.0         15           1
 G glycine             8.6         32           3
 H histidine           2.1          8           2
 I isoleucine          4.8         18           1
 K lysine              5.4         20           2
 L leucine            10.2         38           3
 M methionine          2.7         10           1
 N asparagine          4.0         15           1
 P proline             3.2         12           2
 Q glutamine           5.4         20           2
 R arginine            5.1         19           1
 S serine              8.3         31           2
 T threonine           4.3         16           1
 V valine             10.7         40           3
 W tryptophan          0.3          1           1
 Y tyrosine            2.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   apoptosis-inducing factor (AIF)-like mitchondrion-as... 
AIFM1                 0.037   programmed cell death 8 isoform 2 
AIFM1                 0.037   programmed cell death 8 isoform 1 
AIFM3                 0.034   apoptosis-inducing factor, mitochondrion-associated...
AIFM3                 0.034   apoptosis-inducing factor, mitochondrion-associated,...
AIFM3                 0.034   apoptosis-inducing factor, mitochondrion-associated,...
PYROXD1               0.020   pyridine nucleotide-disulphide oxidoreductase domain...
AIFM1                 0.016   programmed cell death 8 isoform 5 
KDM1                  0.014   amine oxidase (flavin containing) domain 2 isoform a...
KDM1                  0.014   amine oxidase (flavin containing) domain 2 isoform b...
C20orf26              0.010   hypothetical protein LOC26074 
SLC25A13              0.009   solute carrier family 25, member 13 isoform 2 
MAOA                  0.007   monoamine oxidase A 
SLC25A13              0.007   solute carrier family 25, member 13 isoform 1 [Homo...
PKHD1                 0.007   fibrocystin isoform 1 
SQRDL                 0.007   sulfide dehydrogenase like 
CCDC132               0.006   coiled-coil domain containing 132 isoform a 
PRDM13                0.006   PR domain containing 13 
MICAL2                0.006   microtubule associated monoxygenase, calponin and LIM...
HTATIP2               0.006   HIV-1 Tat interactive protein 2, 30kDa isoform a [H...
RETSAT                0.006   all-trans-13,14-dihydroretinol saturase 
SMC5                  0.006   SMC5 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press