Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PTPRO Sequence: fasta or formatted (405aa) NCBI GI: 13677218
Description:

receptor-type protein tyrosine phosphatase O isoform c precursor

Referenced in:

Protein Tyrosine Phosphatases

Other entries for this name:
alt prot [1216aa] receptor-type protein tyrosine phosphatase O isoform a precursor
alt prot [377aa] receptor-type protein tyrosine phosphatase O isoform d precursor
alt prot [377aa] receptor-type protein tyrosine phosphatase O isoform d precursor
alt mRNA [405aa] receptor-type protein tyrosine phosphatase O isoform c precursor
alt prot [1188aa] receptor-type protein tyrosine phosphatase O isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         23           2
 C cysteine            2.2          9           1
 D aspartate           5.9         24           2
 E glutamate           5.9         24           3
 F phenylalanine       4.7         19           1
 G glycine             4.0         16           1
 H histidine           2.7         11           1
 I isoleucine          7.4         30           2
 K lysine              5.4         22           3
 L leucine             9.6         39           3
 M methionine          4.2         17           1
 N asparagine          4.9         20           1
 P proline             4.2         17           1
 Q glutamine           5.2         21           2
 R arginine            5.2         21           2
 S serine              5.4         22           1
 T threonine           4.7         19           1
 V valine              6.2         25           3
 W tryptophan          2.0          8           1
 Y tyrosine            4.4         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   receptor-type protein tyrosine phosphatase O isoform... 
PTPRO                 1.000   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 1.000   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 0.907   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 0.907   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 0.907   receptor-type protein tyrosine phosphatase O isoform ...
PTPRB                 0.337   protein tyrosine phosphatase, receptor type, B isof...
PTPRB                 0.337   protein tyrosine phosphatase, receptor type, B isof...
PTPRQ                 0.319   protein tyrosine phosphatase, receptor type, Q [Hom...
PTPRJ                 0.313   protein tyrosine phosphatase, receptor type, J isof...
PTPRH                 0.301   protein tyrosine phosphatase, receptor type, H isof...
PTPRH                 0.301   protein tyrosine phosphatase, receptor type, H isof...
PTPRF                 0.248   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.248   protein tyrosine phosphatase, receptor type, F isof...
PTPRS                 0.245   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.245   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.245   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.245   protein tyrosine phosphatase, receptor type, sigma ...
PTPRD                 0.245   protein tyrosine phosphatase, receptor type, D isof...
PTPRD                 0.245   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.245   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.245   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.245   protein tyrosine phosphatase, receptor type, D isofo...
PTPRT                 0.244   protein tyrosine phosphatase, receptor type, T isof...
PTPRT                 0.244   protein tyrosine phosphatase, receptor type, T isof...
PTPRM                 0.240   protein tyrosine phosphatase, receptor type, M isof...
PTPRM                 0.240   protein tyrosine phosphatase, receptor type, M isof...
PTPRC                 0.236   protein tyrosine phosphatase, receptor type, C isofo...
PTPRC                 0.236   protein tyrosine phosphatase, receptor type, C isofo...
PTPRC                 0.236   protein tyrosine phosphatase, receptor type, C isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press