Guide to the Human Genome
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Name: EVI2B Sequence: fasta or formatted (448aa) NCBI GI: 148227044
Description:

ecotropic viral integration site 2B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         21           2
 C cysteine            1.3          6           1
 D aspartate           6.0         27           2
 E glutamate           4.7         21           1
 F phenylalanine       3.6         16           2
 G glycine             3.3         15           1
 H histidine           0.9          4           1
 I isoleucine          6.2         28           4
 K lysine              5.1         23           1
 L leucine             8.5         38           2
 M methionine          1.3          6           1
 N asparagine          6.5         29           2
 P proline            10.5         47           5
 Q glutamine           6.9         31           2
 R arginine            1.8          8           1
 S serine             12.9         58           3
 T threonine          10.0         45           2
 V valine              3.8         17           1
 W tryptophan          0.7          3           1
 Y tyrosine            1.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ecotropic viral integration site 2B 
LOC100294420          0.025   PREDICTED: similar to mucin 2 
LOC100131514          0.024   PREDICTED: similar to hCG1747327, partial 
MUC12                 0.023   PREDICTED: mucin 12 
LOC100294236          0.022   PREDICTED: similar to diffuse panbronchiolitis crit...
MUC5B                 0.022   mucin 5, subtype B, tracheobronchial 
SPN                   0.022   sialophorin 
SPN                   0.022   sialophorin 
MUC3A                 0.021   PREDICTED: mucin 3A, cell surface associated, parti...
LOC100132635          0.021   PREDICTED: similar to mucin 5, partial 
LOC100128719          0.021   PREDICTED: hypothetical protein, partial 
LOC100128719          0.021   PREDICTED: hypothetical protein, partial 
MUC12                 0.021   PREDICTED: mucin 12, cell surface associated 
ANK3                  0.021   ankyrin 3 isoform 1 
MUC5AC                0.019   mucin 5AC 
MUC12                 0.019   PREDICTED: mucin 12 
MUC12                 0.019   PREDICTED: mucin 12 
LOC729792             0.019   PREDICTED: hypothetical protein 
LOC100133790          0.019   PREDICTED: intestinal mucin-like, partial 
LOC729792             0.019   PREDICTED: hypothetical protein 
LOC729792             0.019   PREDICTED: hypothetical protein 
LOC100294501          0.019   PREDICTED: hypothetical protein 
LOC100294249          0.019   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.019   PREDICTED: hypothetical protein 
LOC100294204          0.019   PREDICTED: hypothetical protein 
LOC100294136          0.019   PREDICTED: hypothetical protein 
LOC100294091          0.019   PREDICTED: hypothetical protein 
LOC730401             0.019   PREDICTED: hypothetical protein 
MUC17                 0.019   mucin 17 
NUP62                 0.019   nucleoporin 62kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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