Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TAF7 Sequence: fasta or formatted (349aa) NCBI GI: 14717407
Description:

TATA box-binding protein-associated factor 2F

Referenced in:

RNA Polymerase and General Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         15           1
 C cysteine            0.6          2           1
 D aspartate           9.5         33           2
 E glutamate          12.3         43           2
 F phenylalanine       1.7          6           1
 G glycine             3.4         12           1
 H histidine           2.9         10           1
 I isoleucine          5.2         18           2
 K lysine             10.3         36           3
 L leucine            10.0         35           2
 M methionine          2.0          7           1
 N asparagine          3.4         12           1
 P proline             3.7         13           2
 Q glutamine           6.0         21           1
 R arginine            5.7         20           2
 S serine              7.2         25           4
 T threonine           4.6         16           1
 V valine              5.4         19           1
 W tryptophan          0.6          2           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TATA box-binding protein-associated factor 2F 
TAF7L                 0.555   TATA box binding protein-associated factor, RNA poly...
MYH10                 0.041   myosin, heavy polypeptide 10, non-muscle 
MYH9                  0.041   myosin, heavy polypeptide 9, non-muscle 
RTF1                  0.039   Paf1/RNA polymerase II complex component 
C10orf118             0.039   CTCL tumor antigen L14-2 
LOC283685             0.039   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC400352             0.036   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.036   PREDICTED: similar to Putative golgin subfamily A m...
EEA1                  0.036   early endosome antigen 1, 162kD 
MPHOSPH10             0.036   M-phase phosphoprotein 10 
GOLGA4                0.036   golgi autoantigen, golgin subfamily a, 4 
LOC727832             0.035   golgi autoantigen, golgin subfamily a-like 
CLIP1                 0.033   restin isoform b 
CLIP1                 0.033   restin isoform a 
GCC2                  0.033   GRIP and coiled-coil domain-containing 2 
LOC645202             0.032   PREDICTED: hypothetical protein LOC645202 
DST                   0.032   dystonin isoform 1e precursor 
KIF21A                0.032   kinesin family member 21A 
WDR87                 0.030   NYD-SP11 protein 
KIAA0774              0.030   hypothetical protein LOC23281 isoform b 
CDC2L2                0.030   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.030   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.030   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.030   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.030   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.030   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.030   cell division cycle 2-like 1 (PITSLRE proteins) isof...
SLMAP                 0.030   sarcolemma associated protein 
EIF3A                 0.030   eukaryotic translation initiation factor 3, subunit 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press