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Search of human proteins with 146198668
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|146198668 hypothetical protein LOC79919 isoform 2 [Homo
sapiens]
(279 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|146198668 hypothetical protein LOC79919 isoform 2 [Homo sapiens] 557 e-159
gi|146198549 hypothetical protein LOC79919 isoform 1 [Homo sapiens] 551 e-157
gi|22748791 hypothetical protein LOC126868 [Homo sapiens] 44 2e-04
gi|5453730 mab-21-like protein 2 [Homo sapiens] 36 0.033
gi|5031897 mab-21-like protein 1 [Homo sapiens] 34 0.16
gi|197333817 hypothetical protein LOC151963 [Homo sapiens] 33 0.28
gi|205360947 microtubule associated monoxygenase, calponin and L... 32 0.80
gi|226530313 microtubule associated monoxygenase, calponin and L... 32 0.80
gi|29789287 inositol 1,4,5-triphosphate receptor interacting pro... 31 1.4
gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD prote... 29 5.2
gi|239754516 PREDICTED: hypothetical protein [Homo sapiens] 28 6.8
gi|157168329 formin 1 [Homo sapiens] 28 8.9
gi|130979981 CD33 antigen isoform 1 precursor [Homo sapiens] 28 8.9
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ... 28 8.9
gi|113420249 PREDICTED: hypothetical protein LOC728071 [Homo sap... 28 8.9
gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo ... 28 8.9
gi|239508758 PREDICTED: hypothetical protein [Homo sapiens] 28 8.9
gi|4505253 mutS homolog 5 isoform c [Homo sapiens] 28 8.9
gi|26638664 mutS homolog 5 isoform b [Homo sapiens] 28 8.9
gi|26638662 mutS homolog 5 isoform a [Homo sapiens] 28 8.9
gi|26638666 mutS homolog 5 isoform c [Homo sapiens] 28 8.9
gi|13124773 brain protein 16 [Homo sapiens] 28 8.9
>gi|146198668 hypothetical protein LOC79919 isoform 2 [Homo sapiens]
Length = 279
Score = 557 bits (1436), Expect = e-159
Identities = 279/279 (100%), Positives = 279/279 (100%)
Query: 1 MDTGSLNAASLREEQLHLSLLVSSGWRTISFHVVPVVRRKLGAPALEGVQQMPGFPEGSL 60
MDTGSLNAASLREEQLHLSLLVSSGWRTISFHVVPVVRRKLGAPALEGVQQMPGFPEGSL
Sbjct: 1 MDTGSLNAASLREEQLHLSLLVSSGWRTISFHVVPVVRRKLGAPALEGVQQMPGFPEGSL 60
Query: 61 RRILSQGVDLVPASAQLWRTSTDYLLTRLLGELGSLQGHRLDSLSILDRVNHESWRDSGQ 120
RRILSQGVDLVPASAQLWRTSTDYLLTRLLGELGSLQGHRLDSLSILDRVNHESWRDSGQ
Sbjct: 61 RRILSQGVDLVPASAQLWRTSTDYLLTRLLGELGSLQGHRLDSLSILDRVNHESWRDSGQ 120
Query: 121 TDGLTFGHLKMVLLWASVLFLAPEDWAELQGAVYRLLVVLLCCLATRKLPHFLHPQRNLL 180
TDGLTFGHLKMVLLWASVLFLAPEDWAELQGAVYRLLVVLLCCLATRKLPHFLHPQRNLL
Sbjct: 121 TDGLTFGHLKMVLLWASVLFLAPEDWAELQGAVYRLLVVLLCCLATRKLPHFLHPQRNLL 180
Query: 181 QGSGLDLGAIYQRVEGFASQPEAALRIHATHLGRSPPPRIGSGLKALLQLPASDPTYWAT 240
QGSGLDLGAIYQRVEGFASQPEAALRIHATHLGRSPPPRIGSGLKALLQLPASDPTYWAT
Sbjct: 181 QGSGLDLGAIYQRVEGFASQPEAALRIHATHLGRSPPPRIGSGLKALLQLPASDPTYWAT 240
Query: 241 AYFDVLLDKFQVFNIQDKDRISAMQSIFQKTRTLGGEES 279
AYFDVLLDKFQVFNIQDKDRISAMQSIFQKTRTLGGEES
Sbjct: 241 AYFDVLLDKFQVFNIQDKDRISAMQSIFQKTRTLGGEES 279
>gi|146198549 hypothetical protein LOC79919 isoform 1 [Homo sapiens]
Length = 447
Score = 551 bits (1420), Expect = e-157
Identities = 276/276 (100%), Positives = 276/276 (100%)
Query: 4 GSLNAASLREEQLHLSLLVSSGWRTISFHVVPVVRRKLGAPALEGVQQMPGFPEGSLRRI 63
GSLNAASLREEQLHLSLLVSSGWRTISFHVVPVVRRKLGAPALEGVQQMPGFPEGSLRRI
Sbjct: 172 GSLNAASLREEQLHLSLLVSSGWRTISFHVVPVVRRKLGAPALEGVQQMPGFPEGSLRRI 231
Query: 64 LSQGVDLVPASAQLWRTSTDYLLTRLLGELGSLQGHRLDSLSILDRVNHESWRDSGQTDG 123
LSQGVDLVPASAQLWRTSTDYLLTRLLGELGSLQGHRLDSLSILDRVNHESWRDSGQTDG
Sbjct: 232 LSQGVDLVPASAQLWRTSTDYLLTRLLGELGSLQGHRLDSLSILDRVNHESWRDSGQTDG 291
Query: 124 LTFGHLKMVLLWASVLFLAPEDWAELQGAVYRLLVVLLCCLATRKLPHFLHPQRNLLQGS 183
LTFGHLKMVLLWASVLFLAPEDWAELQGAVYRLLVVLLCCLATRKLPHFLHPQRNLLQGS
Sbjct: 292 LTFGHLKMVLLWASVLFLAPEDWAELQGAVYRLLVVLLCCLATRKLPHFLHPQRNLLQGS 351
Query: 184 GLDLGAIYQRVEGFASQPEAALRIHATHLGRSPPPRIGSGLKALLQLPASDPTYWATAYF 243
GLDLGAIYQRVEGFASQPEAALRIHATHLGRSPPPRIGSGLKALLQLPASDPTYWATAYF
Sbjct: 352 GLDLGAIYQRVEGFASQPEAALRIHATHLGRSPPPRIGSGLKALLQLPASDPTYWATAYF 411
Query: 244 DVLLDKFQVFNIQDKDRISAMQSIFQKTRTLGGEES 279
DVLLDKFQVFNIQDKDRISAMQSIFQKTRTLGGEES
Sbjct: 412 DVLLDKFQVFNIQDKDRISAMQSIFQKTRTLGGEES 447
>gi|22748791 hypothetical protein LOC126868 [Homo sapiens]
Length = 362
Score = 43.5 bits (101), Expect = 2e-04
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 2/141 (1%)
Query: 63 ILSQGVDLVPASAQLWRTSTDYLLTRLLGELGSLQGHRLDSLSILDRVNHESWRDSGQTD 122
I S G +L+ S W+ S LL +L G R ++ + + W G
Sbjct: 219 IKSFGFNLLACSNYHWQLSFLRAEQVLLEQLDEDGGCRRKCFQVMRHLKEDIWCP-GNRP 277
Query: 123 GLTFGHLKMVLLWASVLFLAPEDWAELQGAVYRLLVVLLCCLATRKLPHFLHPQRNLLQ- 181
+T HL+ VL W + +DW A RL+ L C++ L H+ NL Q
Sbjct: 278 VITSHHLQTVLFWTCEKYPHFKDWQVFSKAFLRLVRKLHKCVSQHFLKHYFVRNSNLFQC 337
Query: 182 GSGLDLGAIYQRVEGFASQPE 202
+ +L + Q++ F P+
Sbjct: 338 ANPTELDTVAQKLATFLKNPQ 358
>gi|5453730 mab-21-like protein 2 [Homo sapiens]
Length = 359
Score = 36.2 bits (82), Expect = 0.033
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 98 GHRLDSLSILDRVNHESWRDSGQTDGLTFGHLKMVLLWASVLFLAPEDWAE--LQGAVYR 155
G R LS+L + GQ L H+K +LL+ DW E L +
Sbjct: 245 GCRNKCLSVLKTLRDRHLELPGQP--LNNYHMKTLLLYECEKHPRETDWDESCLGDRLNG 302
Query: 156 LLVVLLCCLATRKLPHFLHPQRNLLQG 182
+L+ L+ CL R+ PH+ P +L QG
Sbjct: 303 ILLQLISCLQCRRCPHYFLPNLDLFQG 329
>gi|5031897 mab-21-like protein 1 [Homo sapiens]
Length = 359
Score = 33.9 bits (76), Expect = 0.16
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 98 GHRLDSLSILDRVNHESWRDSGQTDGLTFGHLKMVLLWASVLFLAPEDWAE--LQGAVYR 155
G R LSIL + GQ L H+K ++ + DW E L +
Sbjct: 245 GCRKKCLSILKTLRDRHLELPGQP--LNNYHMKTLVSYECEKHPRESDWDESCLGDRLNG 302
Query: 156 LLVVLLCCLATRKLPHFLHPQRNLLQG 182
+L+ L+ CL R+ PH+ P +L QG
Sbjct: 303 ILLQLISCLQCRRCPHYFLPNLDLFQG 329
>gi|197333817 hypothetical protein LOC151963 [Homo sapiens]
Length = 491
Score = 33.1 bits (74), Expect = 0.28
Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 12/203 (5%)
Query: 18 LSLLVSSGWRTISFHVVPVVRRKLGAPALEGVQQMPG-FPEGSL--RRILSQGVDLVPAS 74
+S+++ G + + +VPVV K G PA+ M F +G + ++S G LVPA
Sbjct: 220 ISIILGVGSSRMLYDIVPVVSFK-GWPAVAQSWLMENHFWDGKITEEEVIS-GFYLVPAC 277
Query: 75 AQLWRTSTDYLLTRLLGELGSLQGHRLDSLSILDRVNHESWRDSGQTDGLTFGHLKMVLL 134
+ + ++ L+ E+ + + + + ++ HL+ ++L
Sbjct: 278 SYKGKKDNEWRLSFARSEVQLKKCISSSLMQAYQACKAIIIKLLSRPKAISPYHLRSMML 337
Query: 135 WAS----VLFLAPEDWAELQGAVYRLLVVLLCCLATRKLPHFLHPQRNLLQGSGLDLGAI 190
WA +LA ED+A + L+ L CL + P++ PQ N+L+ + +
Sbjct: 338 WACDRLPANYLAQEDYAA--HFLLGLIDDLQHCLVNKMCPNYFIPQCNMLEHLSEETVML 395
Query: 191 YQR-VEGFASQPEAALRIHATHL 212
+ R + S P LR H+
Sbjct: 396 HARKLSSVRSDPAEHLRTAIEHV 418
>gi|205360947 microtubule associated monoxygenase, calponin and LIM
domain containing 1 isoform 1 [Homo sapiens]
Length = 1067
Score = 31.6 bits (70), Expect = 0.80
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 210 THLGRSPPPRIGSGLKALLQLPASDPTYWATAYFDVLL 247
T G PPPR GSG +A QL + P A FDVL+
Sbjct: 180 TFTGLQPPPRKGSGWRA--QLQPNPPAQLANYEFDVLI 215
>gi|226530313 microtubule associated monoxygenase, calponin and LIM
domain containing 1 isoform 2 [Homo sapiens]
Length = 981
Score = 31.6 bits (70), Expect = 0.80
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 210 THLGRSPPPRIGSGLKALLQLPASDPTYWATAYFDVLL 247
T G PPPR GSG +A QL + P A FDVL+
Sbjct: 180 TFTGLQPPPRKGSGWRA--QLQPNPPAQLANYEFDVLI 215
>gi|29789287 inositol 1,4,5-triphosphate receptor interacting
protein [Homo sapiens]
Length = 547
Score = 30.8 bits (68), Expect = 1.4
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 123 GLTFGHLKMVLLWASVLFLAPEDW--AELQGAVYRLLVVLLCCLATRKLPHFLHPQRNLL 180
GL+ HLK LL +L A DW +L ++ LL L L +KL HF R +
Sbjct: 427 GLSSYHLKTALLHLLLLRQAA-DWKAGQLDARLHELLCFLEKSLLQKKLHHFFIGNRKVP 485
Query: 181 QGSGLDLGAIYQRVEGFASQPEAALRIHATHLGR 214
+ GL PEA LR +L R
Sbjct: 486 EAMGL---------------PEAVLRAEPLNLFR 504
>gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD protein,
partial [Homo sapiens]
Length = 1700
Score = 28.9 bits (63), Expect = 5.2
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 2 DTGSLNAASLREEQLHLSLLVSSGWRTISFHVVPVVRRKLGAPALEG--VQQMPGFPEGS 59
DT + + ++R Q + +L S+GW + + + + + A E ++++P FP G
Sbjct: 1475 DTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSEDSYLRRLPPFPSGL 1534
Query: 60 LRRILSQGVDLV 71
+R +GV+ V
Sbjct: 1535 FKRCTDKGVESV 1546
>gi|239754516 PREDICTED: hypothetical protein [Homo sapiens]
Length = 334
Score = 28.5 bits (62), Expect = 6.8
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 25/101 (24%)
Query: 143 PEDWAELQGAVYRLLVVLLCCLATRKLPHFLH--------PQRNLLQGSGLDLGAIYQRV 194
P A L+ AV+R+L VL A R L P R L+G
Sbjct: 93 PAAAAILRAAVHRVLRVLRAAAAVRDAERGLRREGPRRHAPPRKQLRG------------ 140
Query: 195 EGFASQPEAALRIHATHLGRSPPPRIGSGLKALLQLPASDP 235
+ AA + A HLGR PP G AL+ +P + P
Sbjct: 141 -----RRGAAGLVSAGHLGREPPRGGGPRPPALVPVPLATP 176
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 28.1 bits (61), Expect = 8.9
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 186 DLGAIYQRVEGFASQPEAALRIHATHLGRSPPPRIGSGLKALLQLPASDP 235
D+ A Q +EG AS + AL + PPP + SGL +L P P
Sbjct: 626 DIHAALQPMEGMASNQQKALPPPPASI--PPPPPLPSGLGSLSPAPPMPP 673
>gi|130979981 CD33 antigen isoform 1 precursor [Homo sapiens]
Length = 364
Score = 28.1 bits (61), Expect = 8.9
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 129 LKMVLLWASVLFLAPEDWAELQGA--VYRLLVVLLCCLATRKLPHFLHPQRNLLQGSGLD 186
L + LLWA L + P W ++Q + V L VL+ C +P++ + + + G
Sbjct: 5 LLLPLLWAGALAMDPNFWLQVQESVTVQEGLCVLVPCTFFHPIPYY--DKNSPVHGYWFR 62
Query: 187 LGAIYQR 193
GAI R
Sbjct: 63 EGAIISR 69
>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
sapiens]
Length = 334
Score = 28.1 bits (61), Expect = 8.9
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 25/101 (24%)
Query: 143 PEDWAELQGAVYRLLVVLLCCLATRKLPHFLH--------PQRNLLQGSGLDLGAIYQRV 194
P A L+ AV+R+L VL A R L P R L+G
Sbjct: 93 PAAAAILRAAVHRVLRVLRAAAAVRDAERGLRREGPRRHAPPRKQLRG------------ 140
Query: 195 EGFASQPEAALRIHATHLGRSPPPRIGSGLKALLQLPASDP 235
+ AA + A HLGR PP G AL+ +P + P
Sbjct: 141 -----RRGAAGLVSAGHLGREPPRGGGLRPPALVPVPLATP 176
>gi|113420249 PREDICTED: hypothetical protein LOC728071 [Homo
sapiens]
Length = 390
Score = 28.1 bits (61), Expect = 8.9
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 26/110 (23%)
Query: 140 FLAPEDWAELQGAVYRLLVVLLCCLATRKLPHFLHPQRNLLQGSGLDLGAIYQRVEGFAS 199
FLAP A+LQ A R ++ L C P R LL G L A+ + A
Sbjct: 28 FLAPGARADLQAAAVRHVLALTGC----------GPGRALLAGQAALLQALMELAPASAP 77
Query: 200 QPEAALR---------IHATHLGRSPPPRIGSGLKALLQLPASDPTY-WA 239
+AA +H T L P GL A L A DP + WA
Sbjct: 78 ARDAARALVNLAADPGLHETLLAADP------GLPARLMGRALDPQWPWA 121
>gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo
sapiens]
Length = 329
Score = 28.1 bits (61), Expect = 8.9
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 25/101 (24%)
Query: 143 PEDWAELQGAVYRLLVVLLCCLATRKLPHFLH--------PQRNLLQGSGLDLGAIYQRV 194
P A L+ AV+R+L VL A R L P R L+G
Sbjct: 88 PAAAAILRAAVHRVLRVLRAAAAVRDAERGLRREGPRRHAPPRKQLRG------------ 135
Query: 195 EGFASQPEAALRIHATHLGRSPPPRIGSGLKALLQLPASDP 235
+ AA + A HLGR PP G AL+ +P + P
Sbjct: 136 -----RRGAAGLVSAGHLGREPPRGGGLRPPALVPVPLATP 171
>gi|239508758 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 28.1 bits (61), Expect = 8.9
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 25/101 (24%)
Query: 143 PEDWAELQGAVYRLLVVLLCCLATRKLPHFLH--------PQRNLLQGSGLDLGAIYQRV 194
P A L+ AV+R+L VL A R L P R L+G
Sbjct: 88 PAAAAILRAAVHRVLRVLRAAAAVRDAERGLRREGPRRHAPPRKQLRG------------ 135
Query: 195 EGFASQPEAALRIHATHLGRSPPPRIGSGLKALLQLPASDP 235
+ AA + A HLGR PP G AL+ +P + P
Sbjct: 136 -----RRGAAGLVSAGHLGREPPRGGGLRPPALVPVPLATP 171
>gi|4505253 mutS homolog 5 isoform c [Homo sapiens]
Length = 834
Score = 28.1 bits (61), Expect = 8.9
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 15 QLHLSLLVSSGWRTISFHVVPVVRRKLGAPALEGVQQMPGFPEGSLRRILSQGVDLVPAS 74
++HL +L +SG+ I+++ + + MP P+ ++L + +D +
Sbjct: 49 EIHLCVLWNSGYLGIAYYDT----------SDSTIHFMPDAPDHESLKLLQRVLDEINPQ 98
Query: 75 AQLWRTSTDYLLTRLLGELGSLQGHR 100
+ + D +TR LG+L S Q HR
Sbjct: 99 SVVTSAKQDENMTRFLGKLAS-QEHR 123
>gi|26638664 mutS homolog 5 isoform b [Homo sapiens]
Length = 835
Score = 28.1 bits (61), Expect = 8.9
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 15 QLHLSLLVSSGWRTISFHVVPVVRRKLGAPALEGVQQMPGFPEGSLRRILSQGVDLVPAS 74
++HL +L +SG+ I+++ + + MP P+ ++L + +D +
Sbjct: 49 EIHLCVLWNSGYLGIAYYDT----------SDSTIHFMPDAPDHESLKLLQRVLDEINPQ 98
Query: 75 AQLWRTSTDYLLTRLLGELGSLQGHR 100
+ + D +TR LG+L S Q HR
Sbjct: 99 SVVTSAKQDENMTRFLGKLAS-QEHR 123
>gi|26638662 mutS homolog 5 isoform a [Homo sapiens]
Length = 851
Score = 28.1 bits (61), Expect = 8.9
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 15 QLHLSLLVSSGWRTISFHVVPVVRRKLGAPALEGVQQMPGFPEGSLRRILSQGVDLVPAS 74
++HL +L +SG+ I+++ + + MP P+ ++L + +D +
Sbjct: 49 EIHLCVLWNSGYLGIAYYDT----------SDSTIHFMPDAPDHESLKLLQRVLDEINPQ 98
Query: 75 AQLWRTSTDYLLTRLLGELGSLQGHR 100
+ + D +TR LG+L S Q HR
Sbjct: 99 SVVTSAKQDENMTRFLGKLAS-QEHR 123
>gi|26638666 mutS homolog 5 isoform c [Homo sapiens]
Length = 834
Score = 28.1 bits (61), Expect = 8.9
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 15 QLHLSLLVSSGWRTISFHVVPVVRRKLGAPALEGVQQMPGFPEGSLRRILSQGVDLVPAS 74
++HL +L +SG+ I+++ + + MP P+ ++L + +D +
Sbjct: 49 EIHLCVLWNSGYLGIAYYDT----------SDSTIHFMPDAPDHESLKLLQRVLDEINPQ 98
Query: 75 AQLWRTSTDYLLTRLLGELGSLQGHR 100
+ + D +TR LG+L S Q HR
Sbjct: 99 SVVTSAKQDENMTRFLGKLAS-QEHR 123
>gi|13124773 brain protein 16 [Homo sapiens]
Length = 390
Score = 28.1 bits (61), Expect = 8.9
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 26/110 (23%)
Query: 140 FLAPEDWAELQGAVYRLLVVLLCCLATRKLPHFLHPQRNLLQGSGLDLGAIYQRVEGFAS 199
FLAP A+LQ A R ++ L C P R LL G L A+ + A
Sbjct: 28 FLAPGARADLQAAAVRHVLALTGC----------GPGRALLAGQAALLQALMELAPASAP 77
Query: 200 QPEAALR---------IHATHLGRSPPPRIGSGLKALLQLPASDPTY-WA 239
+AA +H T L P GL A L A DP + WA
Sbjct: 78 ARDAARALVNLAADPGLHETLLAADP------GLPARLMGRALDPQWPWA 121
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,069,901
Number of Sequences: 37866
Number of extensions: 505756
Number of successful extensions: 1199
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 22
length of query: 279
length of database: 18,247,518
effective HSP length: 101
effective length of query: 178
effective length of database: 14,423,052
effective search space: 2567303256
effective search space used: 2567303256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.