Guide to the Human Genome
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Name: C2orf54 Sequence: fasta or formatted (447aa) NCBI GI: 146198549
Description:

hypothetical protein LOC79919 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {279aa} hypothetical protein LOC79919 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         41           2
 C cysteine            1.3          6           2
 D aspartate           5.1         23           1
 E glutamate           6.3         28           2
 F phenylalanine       3.4         15           1
 G glycine             6.7         30           2
 H histidine           3.8         17           2
 I isoleucine          3.4         15           1
 K lysine              2.5         11           1
 L leucine            15.4         69           2
 M methionine          1.6          7           1
 N asparagine          1.1          5           1
 P proline             6.0         27           3
 Q glutamine           5.1         23           2
 R arginine            6.9         31           2
 S serine              7.4         33           2
 T threonine           4.3         19           2
 V valine              6.9         31           2
 W tryptophan          2.0          9           1
 Y tyrosine            1.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79919 isoform 1 
C2orf54               0.604   hypothetical protein LOC79919 isoform 2 
C1orf161              0.039   hypothetical protein LOC126868 
MAB21L2               0.018   mab-21-like protein 2 
MAB21L1               0.011   mab-21-like protein 1 
C3orf59               0.009   hypothetical protein LOC151963 
MICAL1                0.008   microtubule associated monoxygenase, calponin and L...
MICAL1                0.008   microtubule associated monoxygenase, calponin and L...
ITPRIP                0.007   inositol 1,4,5-triphosphate receptor interacting pro...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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