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Search of human proteins with 109698601
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109698601 ceroid-lipofuscinosis, neuronal 3 [Homo sapiens]
(438 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502889 ceroid-lipofuscinosis, neuronal 3 [Homo sapiens] 880 0.0
gi|109698601 ceroid-lipofuscinosis, neuronal 3 [Homo sapiens] 880 0.0
gi|38708299 solute carrier family 29 (nucleoside transporters), ... 36 0.060
gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens] 33 0.67
gi|4557529 post-synaptic density protein 95 isoform 1 [Homo sapi... 32 1.1
gi|209862789 microtubule associated monoxygenase, calponin and L... 32 1.1
gi|22748751 solute carrier family 43, member 2 [Homo sapiens] 32 1.5
gi|239750710 PREDICTED: hypothetical protein [Homo sapiens] 31 2.5
gi|239745016 PREDICTED: hypothetical protein XP_002343331 [Homo ... 31 2.5
gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapi... 31 2.5
gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens] 30 5.7
gi|14042927 MLN64 N-terminal homolog [Homo sapiens] 30 5.7
gi|193788732 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193788730 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193788728 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193788724 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193788720 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|120433602 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193788548 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193788544 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193788542 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193788540 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193788538 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193788536 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193794832 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193788534 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193788532 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193794830 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193788530 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
gi|193788528 calcium channel, voltage-dependent, L type, alpha 1... 29 7.4
>gi|4502889 ceroid-lipofuscinosis, neuronal 3 [Homo sapiens]
Length = 438
Score = 880 bits (2275), Expect = 0.0
Identities = 438/438 (100%), Positives = 438/438 (100%)
Query: 1 MGGCAGSRRRFSDSEGEETVPEPRLPLLDHQGAHWKNAVGFWLLGLCNNFSYVVMLSAAH 60
MGGCAGSRRRFSDSEGEETVPEPRLPLLDHQGAHWKNAVGFWLLGLCNNFSYVVMLSAAH
Sbjct: 1 MGGCAGSRRRFSDSEGEETVPEPRLPLLDHQGAHWKNAVGFWLLGLCNNFSYVVMLSAAH 60
Query: 61 DILSHKRTSGNQSHVDPGPTPIPHNSSSRFDCNSVSTAAVLLADILPTLVIKLLAPLGLH 120
DILSHKRTSGNQSHVDPGPTPIPHNSSSRFDCNSVSTAAVLLADILPTLVIKLLAPLGLH
Sbjct: 61 DILSHKRTSGNQSHVDPGPTPIPHNSSSRFDCNSVSTAAVLLADILPTLVIKLLAPLGLH 120
Query: 121 LLPYSPRVLVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEVTFLSLTAFYPRAV 180
LLPYSPRVLVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEVTFLSLTAFYPRAV
Sbjct: 121 LLPYSPRVLVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEVTFLSLTAFYPRAV 180
Query: 181 ISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLLLTSPEAQDPG 240
ISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLLLTSPEAQDPG
Sbjct: 181 ISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLLLTSPEAQDPG 240
Query: 241 GEEEAESAARQPLIRTEAPESKPGSSSSLSLRERWTVFKGLLWYIVPLVVVYFAEYFINQ 300
GEEEAESAARQPLIRTEAPESKPGSSSSLSLRERWTVFKGLLWYIVPLVVVYFAEYFINQ
Sbjct: 241 GEEEAESAARQPLIRTEAPESKPGSSSSLSLRERWTVFKGLLWYIVPLVVVYFAEYFINQ 300
Query: 301 GLFELLFFWNTSLSHAQQYRWYQMLYQAGVFASRSSLRCCRIRFTWALALLQCLNLVFLL 360
GLFELLFFWNTSLSHAQQYRWYQMLYQAGVFASRSSLRCCRIRFTWALALLQCLNLVFLL
Sbjct: 301 GLFELLFFWNTSLSHAQQYRWYQMLYQAGVFASRSSLRCCRIRFTWALALLQCLNLVFLL 360
Query: 361 ADVWFGFLPSIYLVFLIILYEGLLGGAAYVNTFHNIALETSDEHREFAMAATCISDTLGI 420
ADVWFGFLPSIYLVFLIILYEGLLGGAAYVNTFHNIALETSDEHREFAMAATCISDTLGI
Sbjct: 361 ADVWFGFLPSIYLVFLIILYEGLLGGAAYVNTFHNIALETSDEHREFAMAATCISDTLGI 420
Query: 421 SLSGLLALPLHDFLCQLS 438
SLSGLLALPLHDFLCQLS
Sbjct: 421 SLSGLLALPLHDFLCQLS 438
>gi|109698601 ceroid-lipofuscinosis, neuronal 3 [Homo sapiens]
Length = 438
Score = 880 bits (2275), Expect = 0.0
Identities = 438/438 (100%), Positives = 438/438 (100%)
Query: 1 MGGCAGSRRRFSDSEGEETVPEPRLPLLDHQGAHWKNAVGFWLLGLCNNFSYVVMLSAAH 60
MGGCAGSRRRFSDSEGEETVPEPRLPLLDHQGAHWKNAVGFWLLGLCNNFSYVVMLSAAH
Sbjct: 1 MGGCAGSRRRFSDSEGEETVPEPRLPLLDHQGAHWKNAVGFWLLGLCNNFSYVVMLSAAH 60
Query: 61 DILSHKRTSGNQSHVDPGPTPIPHNSSSRFDCNSVSTAAVLLADILPTLVIKLLAPLGLH 120
DILSHKRTSGNQSHVDPGPTPIPHNSSSRFDCNSVSTAAVLLADILPTLVIKLLAPLGLH
Sbjct: 61 DILSHKRTSGNQSHVDPGPTPIPHNSSSRFDCNSVSTAAVLLADILPTLVIKLLAPLGLH 120
Query: 121 LLPYSPRVLVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEVTFLSLTAFYPRAV 180
LLPYSPRVLVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEVTFLSLTAFYPRAV
Sbjct: 121 LLPYSPRVLVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEVTFLSLTAFYPRAV 180
Query: 181 ISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLLLTSPEAQDPG 240
ISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLLLTSPEAQDPG
Sbjct: 181 ISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLLLTSPEAQDPG 240
Query: 241 GEEEAESAARQPLIRTEAPESKPGSSSSLSLRERWTVFKGLLWYIVPLVVVYFAEYFINQ 300
GEEEAESAARQPLIRTEAPESKPGSSSSLSLRERWTVFKGLLWYIVPLVVVYFAEYFINQ
Sbjct: 241 GEEEAESAARQPLIRTEAPESKPGSSSSLSLRERWTVFKGLLWYIVPLVVVYFAEYFINQ 300
Query: 301 GLFELLFFWNTSLSHAQQYRWYQMLYQAGVFASRSSLRCCRIRFTWALALLQCLNLVFLL 360
GLFELLFFWNTSLSHAQQYRWYQMLYQAGVFASRSSLRCCRIRFTWALALLQCLNLVFLL
Sbjct: 301 GLFELLFFWNTSLSHAQQYRWYQMLYQAGVFASRSSLRCCRIRFTWALALLQCLNLVFLL 360
Query: 361 ADVWFGFLPSIYLVFLIILYEGLLGGAAYVNTFHNIALETSDEHREFAMAATCISDTLGI 420
ADVWFGFLPSIYLVFLIILYEGLLGGAAYVNTFHNIALETSDEHREFAMAATCISDTLGI
Sbjct: 361 ADVWFGFLPSIYLVFLIILYEGLLGGAAYVNTFHNIALETSDEHREFAMAATCISDTLGI 420
Query: 421 SLSGLLALPLHDFLCQLS 438
SLSGLLALPLHDFLCQLS
Sbjct: 421 SLSGLLALPLHDFLCQLS 438
>gi|38708299 solute carrier family 29 (nucleoside transporters),
member 2 [Homo sapiens]
Length = 456
Score = 36.2 bits (82), Expect = 0.060
Identities = 54/231 (23%), Positives = 84/231 (36%), Gaps = 38/231 (16%)
Query: 100 VLLADILPTLVIKLLAPLGLHLLPYSPRVLVSGICAAGSFVLVAFSHSVGTS-------- 151
V L LP L+ LL +P + R+L S + F L A V S
Sbjct: 71 VTLLSQLPLLLFTLLNSFLYQCVPETVRILGSLLAILLLFALTAALVKVDMSPGPFFSIT 130
Query: 152 LCGVVFASISSGLGEVTFLSLTAFYPRAVISWWSSGTGGAGLLGALSYLGLTQAGLSPQQ 211
+ V F + S + + + P + + SG G AG+ AL+ L +G+ +
Sbjct: 131 MASVCFINSFSAVLQGSLFGQLGTMPSTYSTLFLSGQGLAGIFAALAMLLSMASGVDAET 190
Query: 212 TLLSM---------------LGIPALLLASYFLLLTSPEAQDPGGEEEAE---------- 246
+ L L +P L A Y+L S +AQ E +AE
Sbjct: 191 SALGYFITPCVGILMSIVCYLSLPHLKFARYYLANKSSQAQAQELETKAELLQSDENGIP 250
Query: 247 -----SAARQPLIRTEAPESKPGSSSSLSLRERWTVFKGLLWYIVPLVVVY 292
A L + PES+P +TVF+ + + LV+V+
Sbjct: 251 SSPQKVALTLDLDLEKEPESEPDEPQKPGKPSVFTVFQKIWLTALCLVLVF 301
>gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens]
Length = 4857
Score = 32.7 bits (73), Expect = 0.67
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 281 LLWYIVPLVVVYFAEYFINQGLFELLFFWNTSL 313
+LW+ L+V Y ++Q LFELLF W+ SL
Sbjct: 3500 ILWHSYELLVEYDLPALLDQELFELLFNWSMSL 3532
>gi|4557529 post-synaptic density protein 95 isoform 1 [Homo
sapiens]
Length = 767
Score = 32.0 bits (71), Expect = 1.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 275 WTVFKGLLWYIVPLVVVYFAEYFINQGLFELLFFWNTSLSHAQQYRW 321
W + LL + PL+ V ++ F Q L ++L ++ SLS +Q+YR+
Sbjct: 13 WLLAPPLLRWAPPLLTVLHSDLF--QALLDILDYYEASLSESQKYRY 57
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 32.0 bits (71), Expect = 1.1
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 13 DSEGEETVPEPRLPLLDHQGAHWKNAV 39
+ EGEE EPRLP D G WK AV
Sbjct: 941 EEEGEEEEEEPRLPPSDLGGVPWKEAV 967
>gi|22748751 solute carrier family 43, member 2 [Homo sapiens]
Length = 569
Score = 31.6 bits (70), Expect = 1.5
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 109 LVIKLLAPLGLHLLPYSPRVL--VSGICAAGSFVLVAFSHSVGTSLCGVVFASIS-SGLG 165
L+ + PLG+ + Y PR L + C A S +L+A+ S +L ++F +++ +G G
Sbjct: 98 LLSAITLPLGIVMDKYGPRKLRLLGSACFAVSCLLIAYGASKPNALSVLIFIALALNGFG 157
Query: 166 E--VTFLSLT 173
+TF SLT
Sbjct: 158 GMCMTFTSLT 167
>gi|239750710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 317
Score = 30.8 bits (68), Expect = 2.5
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 3 GCAGSRRRFSDSEGEETVPEPRLPLLDHQG---AHWKNAVGFWLLG------LCNNFSYV 53
GC G R S + E P P P DH G A + V WL G + F +
Sbjct: 195 GCTGLRAALSTAAAGELPPPPAAP--DHGGVPEARSRTRVHSWLDGHRYPASVWYTFPHT 252
Query: 54 VMLSAAHDILSHKRTSGNQSHVDPGPTPIPHNSS 87
V +AA I + G + ++PGP P +++
Sbjct: 253 VQHAAAAHI---QACLGQVAGIEPGPQTSPESTN 283
>gi|239745016 PREDICTED: hypothetical protein XP_002343331 [Homo
sapiens]
Length = 317
Score = 30.8 bits (68), Expect = 2.5
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 3 GCAGSRRRFSDSEGEETVPEPRLPLLDHQG---AHWKNAVGFWLLG------LCNNFSYV 53
GC G R S + E P P P DH G A + V WL G + F +
Sbjct: 195 GCTGLRAALSTAAAGELPPPPAAP--DHGGVPEARSRTRVHSWLDGHRYPASVWYTFPHT 252
Query: 54 VMLSAAHDILSHKRTSGNQSHVDPGPTPIPHNSS 87
V +AA I + G + ++PGP P +++
Sbjct: 253 VQHAAAAHI---QACLGQVAGIEPGPQTSPESTN 283
>gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapiens]
Length = 1790
Score = 30.8 bits (68), Expect = 2.5
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 232 TSPEAQDPGGEEEAESAARQPLIRTEAPESKPGSSSSLS 270
T PEAQD E AESA+ + + +E ES+ GSSSS S
Sbjct: 1715 TDPEAQDIPEEGSAESASVEGGVESE-EESESGSSSSSS 1752
>gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens]
Length = 1247
Score = 29.6 bits (65), Expect = 5.7
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 236 AQDPGGEEEAESAARQPLIRTEAPESKPGSSSSLSLRERWTVFKGLL 282
A PG E E E PE KPG+ +S + WT G+L
Sbjct: 6 AAGPGPEPEPEPEPEPEPAPEPEPEPKPGAGTSEAFSRLWTDVMGIL 52
>gi|14042927 MLN64 N-terminal homolog [Homo sapiens]
Length = 234
Score = 29.6 bits (65), Expect = 5.7
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 21/93 (22%)
Query: 277 VFKGLLWYIVPLVVVYFAEYFINQGLFELLFFWNTSLSHAQQYRWYQM---LYQAGVFAS 333
+F LLW I E +N G+ NT QY +Y ++ VF
Sbjct: 64 LFVTLLWII---------ELNVNGGIE------NTLEKEVMQYDYYSSYFDIFLLAVFRF 108
Query: 334 RSSLRC---CRIRFTWALALLQCLNLVFLLADV 363
+ + CR+R WA+AL + FLLA V
Sbjct: 109 KVLILAYAVCRLRHWWAIALTTAVTSAFLLAKV 141
>gi|193788732 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 5 [Homo sapiens]
Length = 2166
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|193788730 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 4 [Homo sapiens]
Length = 2173
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|193788728 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 3 [Homo sapiens]
Length = 2179
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|193788724 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 2 [Homo sapiens]
Length = 2186
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|193788720 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 1 [Homo sapiens]
Length = 2221
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|120433602 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 18 [Homo sapiens]
Length = 2138
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|193788548 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 20 [Homo sapiens]
Length = 2127
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|193788544 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 19 [Homo sapiens]
Length = 2135
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 586 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 639
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 640 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 699
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 700 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 754
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 755 DAESLTSAQKEEEEEKERKKLARTASPEKK 784
>gi|193788542 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 17 [Homo sapiens]
Length = 2138
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|193788540 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 16 [Homo sapiens]
Length = 2138
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|193788538 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 15 [Homo sapiens]
Length = 2138
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|193788536 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 14 [Homo sapiens]
Length = 2138
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|193794832 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoforom 13 [Homo sapiens]
Length = 2144
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|193788534 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 12 [Homo sapiens]
Length = 2146
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|193788532 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 11 [Homo sapiens]
Length = 2146
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|193794830 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 10 [Homo sapiens]
Length = 2155
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|193788530 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 9 [Homo sapiens]
Length = 2157
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
>gi|193788528 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 8 [Homo sapiens]
Length = 2157
Score = 29.3 bits (64), Expect = 7.4
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 88 SRFDCNSVSTAAVLLADILPTLVI--KLLAPLGLHLLPYSPRV----------------- 128
+RFDC V+ IL T+++ K+++PLG+ +L +
Sbjct: 589 NRFDC------FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVA 642
Query: 129 -LVSGICAAGSFVLVAFSHSVGTSLCGVVFASISSGLGEV-TFLSLTAFYPRAVISWWSS 186
L++ + + S +L+ F + SL G+ E+ T S +P+++++ +
Sbjct: 643 SLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQI 702
Query: 187 GTG----GAGLLGALSYLGLTQAGLSPQQTLLSMLGIPALLLASYFLL----------LT 232
TG G ++Y G + G+ L+ + I + +Y LL L
Sbjct: 703 LTGEDWNSVMYDGIMAYGGPSFPGM-----LVCIYFIILFICGNYILLNVFLAIAVDNLA 757
Query: 233 SPEAQDPGGEEEAESAARQPLIRTEAPESK 262
E+ +EE E R+ L RT +PE K
Sbjct: 758 DAESLTSAQKEEEEEKERKKLARTASPEKK 787
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,249,673
Number of Sequences: 37866
Number of extensions: 782602
Number of successful extensions: 2350
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2343
Number of HSP's gapped (non-prelim): 36
length of query: 438
length of database: 18,247,518
effective HSP length: 105
effective length of query: 333
effective length of database: 14,271,588
effective search space: 4752438804
effective search space used: 4752438804
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.