Search of human proteins with 14210512

Search of human proteins with 14210512

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14210512 hypothetical protein LOC84529 isoform 2 [Homo
sapiens]
         (183 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|194018542 hypothetical protein LOC84529 isoform 1 [Homo sapiens]   391   e-109
gi|14210512 hypothetical protein LOC84529 isoform 2 [Homo sapiens]    391   e-109
gi|110347451 platelet/endothelial cell adhesion molecule [Homo s...    30   1.2  
gi|148612842 interferon-induced transmembrane protein 3 (1-8U) [...    29   2.0  
gi|151101191 interferon induced transmembrane protein 2 (1-8D) [...    28   3.4  
gi|217272865 myotubularin related protein 4 [Homo sapiens]             28   5.7  
gi|21536464 palmitoylated membrane protein 3 [Homo sapiens]            28   5.7  
gi|154689719 hypothetical protein LOC23231 [Homo sapiens]              27   7.5  
gi|47132537 phosphodiesterase 8A isoform 2 [Homo sapiens]              27   9.8  
gi|27734721 phosphodiesterase 8A isoform 1 [Homo sapiens]              27   9.8  
gi|51173755 zinc finger, matrin type 5 [Homo sapiens]                  27   9.8  
gi|9506863 zinc finger, matrin type 5 [Homo sapiens]                   27   9.8  
gi|193794853 premature ovarian failure, 1B [Homo sapiens]              27   9.8  

>gi|194018542 hypothetical protein LOC84529 isoform 1 [Homo sapiens]
          Length = 281

 Score =  391 bits (1004), Expect = e-109
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MARLILERFLQEHEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIK 60
           MARLILERFLQEHEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIK
Sbjct: 99  MARLILERFLQEHEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIK 158

Query: 61  HAIGHEHEVLLRDLLLEKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKAS 120
           HAIGHEHEVLLRDLLLEKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKAS
Sbjct: 159 HAIGHEHEVLLRDLLLEKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKAS 218

Query: 121 FGDECSHHAYLHDQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKACFPTNIVTLCH 180
           FGDECSHHAYLHDQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKACFPTNIVTLCH
Sbjct: 219 FGDECSHHAYLHDQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKACFPTNIVTLCH 278

Query: 181 SIA 183
           SIA
Sbjct: 279 SIA 281


>gi|14210512 hypothetical protein LOC84529 isoform 2 [Homo sapiens]
          Length = 183

 Score =  391 bits (1004), Expect = e-109
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MARLILERFLQEHEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIK 60
           MARLILERFLQEHEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIK
Sbjct: 1   MARLILERFLQEHEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIK 60

Query: 61  HAIGHEHEVLLRDLLLEKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKAS 120
           HAIGHEHEVLLRDLLLEKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKAS
Sbjct: 61  HAIGHEHEVLLRDLLLEKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKAS 120

Query: 121 FGDECSHHAYLHDQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKACFPTNIVTLCH 180
           FGDECSHHAYLHDQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKACFPTNIVTLCH
Sbjct: 121 FGDECSHHAYLHDQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKACFPTNIVTLCH 180

Query: 181 SIA 183
           SIA
Sbjct: 181 SIA 183


>gi|110347451 platelet/endothelial cell adhesion molecule [Homo
           sapiens]
          Length = 738

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 17/80 (21%)

Query: 29  DPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGHEHEVLLRDLLLEKNLSFLDEDQ- 87
           DP+   D    +  YQC+ ++C              H H  +L ++L  K ++ +DE Q 
Sbjct: 460 DPAVFKDNPTEDVEYQCVADNC--------------HSHAKMLSEVLRVKVIAPVDEVQI 505

Query: 88  --LRAKGYDKTPDFILQVPV 105
             L +K  +   D +LQ  V
Sbjct: 506 SILSSKVVESGEDIVLQCAV 525


>gi|148612842 interferon-induced transmembrane protein 3 (1-8U)
          [Homo sapiens]
          Length = 133

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 13 HEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYG 53
          H   PP+ ++I+  +R  + +PD V+ +      +N CC G
Sbjct: 36 HNPAPPTSTVIH--IRSETSVPDHVVWSLFNTLFMNPCCLG 74


>gi|151101191 interferon induced transmembrane protein 2 (1-8D)
          [Homo sapiens]
          Length = 132

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 13 HEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYG 53
          H   PP  ++I+  +R  + +PD V+ +      +N CC G
Sbjct: 35 HNPAPPMSTVIH--IRSETSVPDHVVWSLFNTLFMNTCCLG 73


>gi|217272865 myotubularin related protein 4 [Homo sapiens]
          Length = 1195

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 11/54 (20%)

Query: 92  GYDKTPDFILQVPV-------AVEGHII----HWIESKASFGDECSHHAYLHDQ 134
           G+D+TP  +    +        +EG  +     W++    FGD C H   + DQ
Sbjct: 410 GWDRTPQIVALAKILLDPYYRTLEGFQVLVESDWLDFGHKFGDRCGHQENVEDQ 463


>gi|21536464 palmitoylated membrane protein 3 [Homo sapiens]
          Length = 585

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 65  HEHEV-LLRDLLLEKNLSFLDEDQLRAKGYDK-TPDFILQVPVAVEGHIIHWIESKASFG 122
           H+ E+  LRD+  EK+LS+L +   + + Y++ +P  +L   VA+   ++  +++ +   
Sbjct: 27  HKEEMGFLRDVFSEKSLSYLMKIHEKLRYYERQSPTPVLHSAVALAEDVMEELQAASVHS 86

Query: 123 DE 124
           DE
Sbjct: 87  DE 88


>gi|154689719 hypothetical protein LOC23231 [Homo sapiens]
          Length = 1132

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 83  LDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKASFGDECSHHAYLHDQFWSYWN-R 141
           L  DQ   +      D IL+V    +G +  W++ +A+ G+  +        FW      
Sbjct: 648 LQGDQAYVETIRLKDDEILKVQTKEDGDVFMWLKHEATRGNAAAQQRLAQMLFWGQQGVA 707

Query: 142 FGPGLVIYWY 151
             P   I WY
Sbjct: 708 KNPEAAIEWY 717


>gi|47132537 phosphodiesterase 8A isoform 2 [Homo sapiens]
          Length = 783

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 10  LQEHEETPPSKSIINSMLRDPSQIPDGVLANQVYQC--IVNDCCYGPLVDCIKHA 62
           L+E+ ET  ++ +IN+MLR P      ++   + +C  + N C   PL  CI+ A
Sbjct: 645 LEENGETDKNQEVINTMLRTPEN--RTLIKRMLIKCADVSNPC--RPLQYCIEWA 695


>gi|27734721 phosphodiesterase 8A isoform 1 [Homo sapiens]
          Length = 829

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 10  LQEHEETPPSKSIINSMLRDPSQIPDGVLANQVYQC--IVNDCCYGPLVDCIKHA 62
           L+E+ ET  ++ +IN+MLR P      ++   + +C  + N C   PL  CI+ A
Sbjct: 691 LEENGETDKNQEVINTMLRTPEN--RTLIKRMLIKCADVSNPC--RPLQYCIEWA 741


>gi|51173755 zinc finger, matrin type 5 [Homo sapiens]
          Length = 170

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 9/48 (18%)

Query: 72  RDLLLEKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKA 119
           RDL   + LS   E++ RA+      +++L  P   EGH+  W+E +A
Sbjct: 80  RDL---QELSIQVEEERRAR------EWLLDAPELPEGHLEDWLEKRA 118


>gi|9506863 zinc finger, matrin type 5 [Homo sapiens]
          Length = 170

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 9/48 (18%)

Query: 72  RDLLLEKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKA 119
           RDL   + LS   E++ RA+      +++L  P   EGH+  W+E +A
Sbjct: 80  RDL---QELSIQVEEERRAR------EWLLDAPELPEGHLEDWLEKRA 118


>gi|193794853 premature ovarian failure, 1B [Homo sapiens]
          Length = 589

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 11/40 (27%), Positives = 24/40 (60%)

Query: 40  NQVYQCIVNDCCYGPLVDCIKHAIGHEHEVLLRDLLLEKN 79
           NQ  +  V++ C GP++      IG+ +  ++++L +EK+
Sbjct: 433 NQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKD 472


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.142    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,835,557
Number of Sequences: 37866
Number of extensions: 346152
Number of successful extensions: 827
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 824
Number of HSP's gapped (non-prelim): 13
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.