Guide to the Human Genome
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Name: POF1B Sequence: fasta or formatted (589aa) NCBI GI: 193794853
Description:

premature ovarian failure, 1B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.9         11           1
 C cysteine            2.5         15           1
 D aspartate           4.6         27           2
 E glutamate           8.8         52           2
 F phenylalanine       1.9         11           2
 G glycine             3.9         23           2
 H histidine           4.2         25           3
 I isoleucine          5.1         30           2
 K lysine              5.9         35           2
 L leucine            10.2         60           2
 M methionine          2.0         12           1
 N asparagine          4.6         27           2
 P proline             4.6         27           2
 Q glutamine           9.7         57           4
 R arginine            4.8         28           1
 S serine             10.4         61           4
 T threonine           6.8         40           2
 V valine              3.6         21           2
 W tryptophan          0.5          3           1
 Y tyrosine            4.1         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   premature ovarian failure, 1B 
KIF7                  0.029   kinesin family member 7 
GCOM1                 0.028   GRINL1A combined protein isoform 2 
GCOM1                 0.028   GRINL1A combined protein isoform 1 
GCOM1                 0.028   GRINL1A combined protein isoform 8 
GCOM1                 0.028   GRINL1A upstream protein isoform 7 
MYH8                  0.027   myosin, heavy chain 8, skeletal muscle, perinatal [...
FILIP1L               0.026   filamin A interacting protein 1-like isoform 3 [Hom...
FILIP1L               0.026   filamin A interacting protein 1-like isoform 1 [Hom...
MYH2                  0.026   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.026   myosin, heavy chain 2, skeletal muscle, adult [Homo...
FILIP1L               0.026   filamin A interacting protein 1-like isoform 2 [Hom...
CENPF                 0.026   centromere protein F 
MYH4                  0.026   myosin, heavy polypeptide 4, skeletal muscle 
FILIP1                0.025   filamin A interacting protein 1 
KTN1                  0.025   kinectin 1 isoform b 
GOLGA4                0.025   golgi autoantigen, golgin subfamily a, 4 
KIF4B                 0.024   kinesin family member 4B 
DSP                   0.023   desmoplakin isoform II 
C10orf118             0.023   CTCL tumor antigen L14-2 
CLIP1                 0.023   restin isoform b 
CLIP1                 0.023   restin isoform a 
MYH13                 0.023   myosin, heavy polypeptide 13, skeletal muscle [Homo...
FHAD1                 0.023   forkhead-associated (FHA) phosphopeptide binding do...
KIF20B                0.023   M-phase phosphoprotein 1 
CCDC158               0.023   coiled-coil domain containing 158 
DSP                   0.022   desmoplakin isoform I 
ROCK2                 0.022   Rho-associated, coiled-coil containing protein kinas...
PMFBP1                0.022   polyamine modulated factor 1 binding protein 1 isof...
PMFBP1                0.022   polyamine modulated factor 1 binding protein 1 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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