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Search of human proteins with 9966907
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9966907 ARS component B precursor [Homo sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9966907 ARS component B precursor [Homo sapiens] 220 2e-58
gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens] 83 4e-17
gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens] 50 3e-07
gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 43 5e-05
gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 43 5e-05
gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo ... 43 5e-05
gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens] 42 1e-04
gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens] 42 1e-04
gi|187829185 CD59 antigen preproprotein [Homo sapiens] 41 2e-04
gi|187829183 CD59 antigen preproprotein [Homo sapiens] 41 2e-04
gi|10835165 CD59 antigen preproprotein [Homo sapiens] 41 2e-04
gi|42716299 CD59 antigen preproprotein [Homo sapiens] 41 2e-04
gi|187829070 CD59 antigen preproprotein [Homo sapiens] 41 2e-04
gi|42761474 CD59 antigen preproprotein [Homo sapiens] 41 2e-04
gi|42716302 CD59 antigen preproprotein [Homo sapiens] 41 2e-04
gi|187828910 CD59 antigen preproprotein [Homo sapiens] 41 2e-04
gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo ... 41 2e-04
gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens] 38 0.001
gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens] 38 0.002
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 36 0.006
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 36 0.006
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 36 0.006
gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Ho... 34 0.022
gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Ho... 34 0.022
gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Ho... 34 0.022
gi|30794264 glycosylphosphatidylinositol anchored high density l... 33 0.048
gi|116284392 mucin 2 precursor [Homo sapiens] 30 0.41
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 30 0.41
gi|93004088 GPI-anchored metastasis-associated protein homolog [... 30 0.41
gi|16118240 keratin associated protein 9.2 [Homo sapiens] 29 0.91
>gi|9966907 ARS component B precursor [Homo sapiens]
Length = 103
Score = 220 bits (560), Expect = 2e-58
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAE 60
MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAE
Sbjct: 1 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAE 60
Query: 61 YPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL 103
YPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL
Sbjct: 61 YPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL 103
>gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]
Length = 125
Score = 83.2 bits (204), Expect = 4e-17
Identities = 41/96 (42%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 8 QLLLVAAWSMGCGE---ALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFN 64
+L L+A CGE AL+CY C EP + C TI C +T C TTL + E YPF
Sbjct: 5 RLALLALVLAACGELAPALRCYVCPEPTGVSDCVTIATCTTNETMCKTTLYSREIVYPFQ 64
Query: 65 QSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCN 100
VT+SC+S C +D D IG + CC +LCN
Sbjct: 65 GDSTVTKSCASKCKPSDVDGIGQTLPVSCCNTELCN 100
>gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens]
Length = 123
Score = 50.4 bits (119), Expect = 3e-07
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 10 LLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPVV 69
LL+A ++ G AL CY+CK +++ C + C C T + V+
Sbjct: 8 LLMAGLALQPGTALLCYSCKAQVSNEDCLQVENCTQLGEQCWTARIRA-----VGLLTVI 62
Query: 70 TRSCSSSCVATDPDSIGAAHLIFCCFRDLCNS 101
++ CS +CV D I CC DLCN+
Sbjct: 63 SKGCSLNCVDDSQDYYVGKKNITCCDTDLCNA 94
>gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 43.1 bits (100), Expect = 5e-05
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 4 RWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPF 63
R + LLL+AA +AL C+ C C ++ C P D C+ T T
Sbjct: 2 RLLLVLLLLAAVCAALAQALHCHVC---CGHEHCESLVECAPTDKYCVITRATSPGGI-- 56
Query: 64 NQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCN 100
+V +SCS +C + S A + CC CN
Sbjct: 57 ----LVMKSCSPTCPNSTVSSDSRALSVSCCQGSQCN 89
>gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 43.1 bits (100), Expect = 5e-05
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 4 RWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPF 63
R + LLL+AA +AL C+ C C ++ C P D C+ T T
Sbjct: 2 RLLLVLLLLAAVCAALAQALHCHVC---CGHEHCESLVECAPTDKYCVITRATSPGGI-- 56
Query: 64 NQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCN 100
+V +SCS +C + S A + CC CN
Sbjct: 57 ----LVMKSCSPTCPNSTVSSDSRALSVSCCQGSQCN 89
>gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo
sapiens]
Length = 190
Score = 43.1 bits (100), Expect = 5e-05
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 4 RWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPF 63
R + LLL+AA +AL C+ C C ++ C P D C+ T T
Sbjct: 2 RLLLVLLLLAAVCAALAQALHCHVC---CGHEHCESLVECAPTDKYCVITRATSPGGI-- 56
Query: 64 NQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCN 100
+V +SCS +C + S A + CC CN
Sbjct: 57 ----LVMKSCSPTCPNSTVSSDSRALSVSCCQGSQCN 89
>gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens]
Length = 131
Score = 42.0 bits (97), Expect = 1e-04
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 9 LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68
+LL A + +L C++C ++ C T C +D C+T +
Sbjct: 7 VLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHS 66
Query: 69 VTRSCSSSCVATDPDSIGAAHL-IFCCFRDLCN 100
++++CS +C + ++G A + I CC LCN
Sbjct: 67 LSKTCSPACPIPEGVNVGVASMGISCCQSFLCN 99
>gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens]
Length = 131
Score = 42.0 bits (97), Expect = 1e-04
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 9 LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68
+LL A + +L C++C ++ C T C +D C+T +
Sbjct: 7 VLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHS 66
Query: 69 VTRSCSSSCVATDPDSIGAAHL-IFCCFRDLCN 100
++++CS +C + ++G A + I CC LCN
Sbjct: 67 LSKTCSPACPIPEGVNVGVASMGISCCQSFLCN 99
>gi|187829185 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 41.2 bits (95), Expect = 2e-04
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 9 LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68
LLLV A G +L+CY C P +A C+T C + AC+ T ++ +N+
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGLQV---YNKC-W 65
Query: 69 VTRSCSSSCVATDPDSIGAAHLIFCCFRDLCN 100
C+ + V T + +CC +DLCN
Sbjct: 66 KFEHCNFNDVTTRLRENELTY--YCCKKDLCN 95
>gi|187829183 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 41.2 bits (95), Expect = 2e-04
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 9 LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68
LLLV A G +L+CY C P +A C+T C + AC+ T ++ +N+
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGLQV---YNKC-W 65
Query: 69 VTRSCSSSCVATDPDSIGAAHLIFCCFRDLCN 100
C+ + V T + +CC +DLCN
Sbjct: 66 KFEHCNFNDVTTRLRENELTY--YCCKKDLCN 95
>gi|10835165 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 41.2 bits (95), Expect = 2e-04
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 9 LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68
LLLV A G +L+CY C P +A C+T C + AC+ T ++ +N+
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGLQV---YNKC-W 65
Query: 69 VTRSCSSSCVATDPDSIGAAHLIFCCFRDLCN 100
C+ + V T + +CC +DLCN
Sbjct: 66 KFEHCNFNDVTTRLRENELTY--YCCKKDLCN 95
>gi|42716299 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 41.2 bits (95), Expect = 2e-04
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 9 LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68
LLLV A G +L+CY C P +A C+T C + AC+ T ++ +N+
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGLQV---YNKC-W 65
Query: 69 VTRSCSSSCVATDPDSIGAAHLIFCCFRDLCN 100
C+ + V T + +CC +DLCN
Sbjct: 66 KFEHCNFNDVTTRLRENELTY--YCCKKDLCN 95
>gi|187829070 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 41.2 bits (95), Expect = 2e-04
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 9 LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68
LLLV A G +L+CY C P +A C+T C + AC+ T ++ +N+
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGLQV---YNKC-W 65
Query: 69 VTRSCSSSCVATDPDSIGAAHLIFCCFRDLCN 100
C+ + V T + +CC +DLCN
Sbjct: 66 KFEHCNFNDVTTRLRENELTY--YCCKKDLCN 95
>gi|42761474 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 41.2 bits (95), Expect = 2e-04
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 9 LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68
LLLV A G +L+CY C P +A C+T C + AC+ T ++ +N+
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGLQV---YNKC-W 65
Query: 69 VTRSCSSSCVATDPDSIGAAHLIFCCFRDLCN 100
C+ + V T + +CC +DLCN
Sbjct: 66 KFEHCNFNDVTTRLRENELTY--YCCKKDLCN 95
>gi|42716302 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 41.2 bits (95), Expect = 2e-04
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 9 LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68
LLLV A G +L+CY C P +A C+T C + AC+ T ++ +N+
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGLQV---YNKC-W 65
Query: 69 VTRSCSSSCVATDPDSIGAAHLIFCCFRDLCN 100
C+ + V T + +CC +DLCN
Sbjct: 66 KFEHCNFNDVTTRLRENELTY--YCCKKDLCN 95
>gi|187828910 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 41.2 bits (95), Expect = 2e-04
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 9 LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68
LLLV A G +L+CY C P +A C+T C + AC+ T ++ +N+
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGLQV---YNKC-W 65
Query: 69 VTRSCSSSCVATDPDSIGAAHLIFCCFRDLCN 100
C+ + V T + +CC +DLCN
Sbjct: 66 KFEHCNFNDVTTRLRENELTY--YCCKKDLCN 95
>gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo
sapiens]
Length = 97
Score = 40.8 bits (94), Expect = 2e-04
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 9 LLLVAAWSM--GCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQS 66
LLL A S+ EA+ C+ C C +RC + T C+TT V +
Sbjct: 7 LLLAAVLSLQLAAAEAIWCHQCTG---FGGCSHGSRCLRDSTHCVTTATRVLSNT--EDL 61
Query: 67 PVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSE 102
P+VT+ C C +G I CC LCN +
Sbjct: 62 PLVTKMCHIGCPDIPSLGLGPYVSIACCQTSLCNHD 97
>gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens]
Length = 131
Score = 38.1 bits (87), Expect = 0.001
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 21 EALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPVVTRSCSSSCVAT 80
EA+ C+ C C +RC + T C+TT V + P+VT+ C C
Sbjct: 55 EAIWCHQCTG---FGGCSHGSRCLRDSTHCVTTATRVLSNT--EDLPLVTKMCHIGCPDI 109
Query: 81 DPDSIGAAHLIFCCFRDLCNSE 102
+G I CC LCN +
Sbjct: 110 PSLGLGPYVSIACCQTSLCNHD 131
>gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens]
Length = 128
Score = 37.7 bits (86), Expect = 0.002
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 9 LLLVAAWSMGCGEAL--KCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQS 66
LLL+AA ++ G AL +C+ C +S++C+ C C TT TVE +
Sbjct: 5 LLLLAALAVATGPALTLRCHVCT---SSSNCKHSVVCPASSRFCKTTN-TVEPL----RG 56
Query: 67 PVVTRSCSSSCVAT---DPDSIGAAHLIFCCFRDLCNSEL 103
+V + C+ SC + CC DLCN +L
Sbjct: 57 NLVKKDCAESCTPSYTLQGQVSSGTSSTQCCQEDLCNEKL 96
>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 36.2 bits (82), Expect = 0.006
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 9 LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68
L+LV + +AL C+ C +C RC CMTT Y
Sbjct: 7 LILVVLMGLPLAQALDCHVC--AYNGDNCFNPMRCPAMVAYCMTT-----RTYYTPTRMK 59
Query: 69 VTRSCSSSCVATDPDSIGA-AHLIFCCFRDLCN 100
V++SC C T D A CC DLCN
Sbjct: 60 VSKSCVPRCFETVYDGYSKHASTTSCCQYDLCN 92
>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 36.2 bits (82), Expect = 0.006
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 9 LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68
L+LV + +AL C+ C +C RC CMTT Y
Sbjct: 7 LILVVLMGLPLAQALDCHVC--AYNGDNCFNPMRCPAMVAYCMTT-----RTYYTPTRMK 59
Query: 69 VTRSCSSSCVATDPDSIGA-AHLIFCCFRDLCN 100
V++SC C T D A CC DLCN
Sbjct: 60 VSKSCVPRCFETVYDGYSKHASTTSCCQYDLCN 92
>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 36.2 bits (82), Expect = 0.006
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 9 LLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPV 68
L+LV + +AL C+ C +C RC CMTT Y
Sbjct: 7 LILVVLMGLPLAQALDCHVC--AYNGDNCFNPMRCPAMVAYCMTT-----RTYYTPTRMK 59
Query: 69 VTRSCSSSCVATDPDSIGA-AHLIFCCFRDLCN 100
V++SC C T D A CC DLCN
Sbjct: 60 VSKSCVPRCFETVYDGYSKHASTTSCCQYDLCN 92
>gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Homo
sapiens]
Length = 161
Score = 34.3 bits (77), Expect = 0.022
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 23 LKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPVVTRSCSSSCVATDP 82
L C C S+ C T +C+P DT C + +T + + S V + C+SSC
Sbjct: 47 LWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS--VNKMCASSCDFVKR 103
Query: 83 DSIGAAHLIF-----------CCFRDLCN 100
+ F CC +DLCN
Sbjct: 104 HFFSDYLMGFINSGILKVDVDCCEKDLCN 132
>gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Homo
sapiens]
Length = 140
Score = 34.3 bits (77), Expect = 0.022
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 23 LKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPVVTRSCSSSCVATDP 82
L C C S+ C T +C+P DT C + +T + + S V + C+SSC
Sbjct: 26 LWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS--VNKMCASSCDFVKR 82
Query: 83 DSIGAAHLIF-----------CCFRDLCN 100
+ F CC +DLCN
Sbjct: 83 HFFSDYLMGFINSGILKVDVDCCEKDLCN 111
>gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Homo
sapiens]
Length = 161
Score = 34.3 bits (77), Expect = 0.022
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 23 LKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPVVTRSCSSSCVATDP 82
L C C S+ C T +C+P DT C + +T + + S V + C+SSC
Sbjct: 47 LWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS--VNKMCASSCDFVKR 103
Query: 83 DSIGAAHLIF-----------CCFRDLCN 100
+ F CC +DLCN
Sbjct: 104 HFFSDYLMGFINSGILKVDVDCCEKDLCN 132
>gi|30794264 glycosylphosphatidylinositol anchored high density
lipoprotein binding protein 1 [Homo sapiens]
Length = 184
Score = 33.1 bits (74), Expect = 0.048
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 23 LKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPVVTRS---CSSSCVA 79
L+CYTCK C C T TTL+ + +S ++T C+ SC
Sbjct: 63 LRCYTCKSLPRDERCNLTQNCSHGQTC--TTLIA----HGNTESGLLTTHSTWCTDSCQP 116
Query: 80 TDPDSIGAAHLIFCCFRDLCN 100
G + CC LCN
Sbjct: 117 ITKTVEGTQVTMTCCQSSLCN 137
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 32 MTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPVVTRSCSSSC---VATDPDSIGAA 88
M + C+T T C T VT E Y V+ CS SC V +
Sbjct: 5057 MPNGCCKTCTPRNETRVPCSTVPVTTEVSYAGCTKTVLMNHCSGSCGTFVMYSAKAQALD 5116
Query: 89 HLIFCC 94
H CC
Sbjct: 5117 HSCSCC 5122
>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
Length = 2639
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 32 MTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPVVTRSCSSSC---VATDPDSIGAA 88
M + C+T T C T VT E Y V+ CS SC V +
Sbjct: 2517 MPNGCCKTCTPRNETRVPCSTVPVTTEVSYAGCTKTVLMNHCSGSCGTFVMYSAKAQALD 2576
Query: 89 HLIFCC 94
H CC
Sbjct: 2577 HSCSCC 2582
>gi|93004088 GPI-anchored metastasis-associated protein homolog
[Homo sapiens]
Length = 346
Score = 30.0 bits (66), Expect = 0.41
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 15/107 (14%)
Query: 5 WAVQLLLVAAWSMGCGEALKCYTCKEPM---TSASCRTITRCKPEDTACMTTLVTVEAEY 61
W + LLL G +AL+CY+C + S + +C P C + VE +
Sbjct: 18 WLLLLLL-----RGGAQALECYSCVQKADDGCSPNKMKTVKCAPGVDVCTEAVGAVETIH 72
Query: 62 PFNQSPVVTRSCSSSCVATDPDSIGAAHLIFC-----CFRDLCNSEL 103
Q + R C S + + L+ C +D CN++L
Sbjct: 73 --GQFSLAVRGCGSGLPGKNDRGLDLHGLLAFIQLQQCAQDRCNAKL 117
>gi|16118240 keratin associated protein 9.2 [Homo sapiens]
Length = 174
Score = 28.9 bits (63), Expect = 0.91
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 33/95 (34%)
Query: 27 TCKEPMTSASCRTITRCKP-----------------EDTACMTTLVTVEAEYPFNQSPVV 69
TC +P T +C + C+P ++T C TT Q V
Sbjct: 22 TCWKPTTVTTCSSTPCCQPACCVSSCCQPCCRPTCCQNTCCRTTCC---------QPTCV 72
Query: 70 TRSCSSSCVAT---DPDSIGAAHLIFCCFRDLCNS 101
T C SC +T P G++ CC + C S
Sbjct: 73 TSCCQPSCCSTPCCQPTCCGSS----CCGQTSCGS 103
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.129 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,394,168
Number of Sequences: 37866
Number of extensions: 169600
Number of successful extensions: 661
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 68
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.